mRNA_F-serratus_M_contig6988.18100.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6988.18100.1
Unique NamemRNA_F-serratus_M_contig6988.18100.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: D8LMC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.270e-26
Identity = 64/136 (47.06%), Postives = 76/136 (55.88%), Query Frame = 2
Query:    2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
            GKFLEMVRQQLS             + F   R + S  ++  +       +FSFY LIVT+ARGKSGPLFH DVHDDIR+VH TR+E+D+SHPGK                     YDP  DY T T HGGE+N K
Sbjct:  231 GKFLEMVRQQLS-------------QDFSEMRSVSSENLLYIKEDLIIPHHFSFYDLIVTKARGKSGPLFHFDVHDDIRLVHDTRIEKDESHPGKIVERRWYERNKHIFPASRWETYDPQKDYGTYTIHGGEVNEK 353          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A835Z3T7_9STRA (XAP5, circadian clock regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.010e-19
Identity = 57/136 (41.91%), Postives = 69/136 (50.74%), Query Frame = 2
Query:    2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
            GKFLE VRQQLS               F   R   S  ++  +       ++SFY LIVT+ARGKSGPLFH DV DD+R++H   VE+D+SHPGK                     YDP  DY   TTHG E+N K
Sbjct:  239 GKFLEAVRQQLSTD-------------FSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEK 361          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A7S2G6N3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6N3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.060e-17
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  143 FSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINA 331
            ++FY LI ++ARGKSGPLFH DVHDD+R+ + +RVE+D+SHPGK                     YDP  +  T T HGGE+NA
Sbjct:   82 YTFYDLIASKARGKSGPLFHFDVHDDVRLTNDSRVEKDESHPGKIVERHWYERNKHIFPASRWEVYDPSVERGTYTIHGGEVNA 165          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A8K1FHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX8_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 8.820e-17
Identity = 51/136 (37.50%), Postives = 70/136 (51.47%), Query Frame = 2
Query:    2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
             KFL++VRQQL                F   R + S  ++  +      +N+SFY LIVT+ARGKSGPLFH DVH+D+R+++  RVE+D+SHPGK                     YDP       T HG E+++K
Sbjct:  225 SKFLDLVRQQLVTE-------------FTELRGVSSDNLIYVKEDLIIPQNYSFYDLIVTKARGKSGPLFHFDVHEDVRLINDARVEKDESHPGKVVERHWYEKNKHIFPASRWEMYDPSVKRDKYTIHGDEVSSK 347          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A7S3XP37_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP37_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 1.170e-16
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  140 NFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHY-TRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
            NFSFY LI T+ARGKSGPLFH DVHDD+R+    TR+E+D+SHPGK                     ++P  D+ T T HGGEI  K
Sbjct:   64 NFSFYDLIATKARGKSGPLFHFDVHDDLRLGPVDTRIEKDESHPGKVLQRSWYERNKHIFPASRWEVWEPGKDFGTYTIHGGEIYTK 150          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: K3WKT1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKT1_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 1.310e-15
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK 274
            GK+LE+V+QQL                F   R + S  ++  +       ++SFY LIVT+ARGKSGPLFH DVH+D+R++H  RVE+D+SHPGK
Sbjct:  218 GKYLELVKQQLV-------------NEFAELRGVSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVHEDVRLIHDARVEKDESHPGK 299          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A0G4GK24_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GK24_9ALVE)

HSP 1 Score: 80.5 bits (197), Expect = 1.660e-15
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  146 SFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
            SFY LI ++ARGKSGPLFH DVHDDIR++  TRVE+D+SH GK                     YDP+  + T T HG E+NAK
Sbjct:  265 SFYELIRSKARGKSGPLFHFDVHDDIRLMSDTRVEKDESHAGKIVDRKWYDRNKHIFPASRWEVYDPNKTFETYTVHGREVNAK 348          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A1V9ZGH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGH8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.440e-15
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGWKNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK 274
            GKFLE+VR+ L+      R  ++    +     I            N SFY LIVT+ARGKSGPLFH DVHDDIR+V+  RVE+D+SHPGK
Sbjct:  206 GKFLELVRKDLAAEFPDVRTVSVDNLMYIKEDLIIPH---------NLSFYDLIVTKARGKSGPLFHFDVHDDIRLVNDVRVEKDESHPGK 287          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A2D4BPT8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPT8_PYTIN)

HSP 1 Score: 79.7 bits (195), Expect = 2.550e-15
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  140 NFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
            ++SFY LIVTRARGKSGPLFH DVH+D+R+V+  RVE+D+SHPGK                     YDP       T HG E++ K
Sbjct:  236 HYSFYDLIVTRARGKSGPLFHFDVHEDVRLVNDARVEKDESHPGKVVERHWYEKNKHIFPASRWEVYDPSVKREKYTIHGDEVSRK 321          
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A0N7L3S6_PLAHL (Protein xap5 circadian timekeeper-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3S6_PLAHL)

HSP 1 Score: 79.3 bits (194), Expect = 3.910e-15
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGWKNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK 274
            GK+LE+V+QQL  P         A K       +    I+      ++SFY LIVT+ARGKSGPLFH DVHDD+R+V   R+++D+SHPGK
Sbjct:  217 GKYLELVKQQL-VPEFAELRSVSAEKLIYVKEDL----IIP----HHYSFYDLIVTKARGKSGPLFHFDVHDDVRLVQDRRIQKDESHPGK 298          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMC0_ECTSI4.270e-2647.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3T7_9STRA2.010e-1941.91XAP5, circadian clock regulator-domain-containing ... [more]
A0A7S2G6N3_9STRA2.060e-1747.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1FHX8_PYTOL8.820e-1737.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3XP37_HETAK1.170e-1649.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3WKT1_GLOUD1.310e-1545.26Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0G4GK24_9ALVE1.660e-1550.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A1V9ZGH8_9STRA2.440e-1549.45Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BPT8_PYTIN2.550e-1547.67Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0N7L3S6_PLAHL3.910e-1547.25Protein xap5 circadian timekeeper-like n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6988contigF-serratus_M_contig6988:9069..10147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6988.18100.1prot_F-serratus_M_contig6988.18100.1Fucus serratus malepolypeptideF-serratus_M_contig6988 9069..10090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.66082-CDS-F-serratus_M_contig6988:9068..91511622932132.66082-CDS-F-serratus_M_contig6988:9068..9151Fucus serratus maleCDSF-serratus_M_contig6988 9069..9151 -
1690964163.792757-CDS-F-serratus_M_contig6988:9068..91511690964163.792757-CDS-F-serratus_M_contig6988:9068..9151Fucus serratus maleCDSF-serratus_M_contig6988 9069..9151 -
1622932132.7000425-CDS-F-serratus_M_contig6988:9512..96691622932132.7000425-CDS-F-serratus_M_contig6988:9512..9669Fucus serratus maleCDSF-serratus_M_contig6988 9513..9669 -
1690964163.8070848-CDS-F-serratus_M_contig6988:9512..96691690964163.8070848-CDS-F-serratus_M_contig6988:9512..9669Fucus serratus maleCDSF-serratus_M_contig6988 9513..9669 -
1622932132.7192316-CDS-F-serratus_M_contig6988:10030..100901622932132.7192316-CDS-F-serratus_M_contig6988:10030..10090Fucus serratus maleCDSF-serratus_M_contig6988 10031..10090 -
1690964163.816723-CDS-F-serratus_M_contig6988:10030..100901690964163.816723-CDS-F-serratus_M_contig6988:10030..10090Fucus serratus maleCDSF-serratus_M_contig6988 10031..10090 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.7345679-UTR-F-serratus_M_contig6988:10090..101471622932132.7345679-UTR-F-serratus_M_contig6988:10090..10147Fucus serratus maleUTRF-serratus_M_contig6988 10091..10147 -
1690964163.8267083-UTR-F-serratus_M_contig6988:10090..101471690964163.8267083-UTR-F-serratus_M_contig6988:10090..10147Fucus serratus maleUTRF-serratus_M_contig6988 10091..10147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6988.18100.1

>prot_F-serratus_M_contig6988.18100.1 ID=prot_F-serratus_M_contig6988.18100.1|Name=mRNA_F-serratus_M_contig6988.18100.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MRSASAENLLYIKEDLIIPHRHGAWLEELLFLPPDRHKGQGKVRPAVPLR
RARRHSHRTLYASRGGQEPSGQVRSPHGLQHVYHPWGRDQREIGPLVSS*
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mRNA from alignment at F-serratus_M_contig6988:9069..10147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6988.18100.1 ID=mRNA_F-serratus_M_contig6988.18100.1|Name=mRNA_F-serratus_M_contig6988.18100.1|organism=Fucus serratus male|type=mRNA|length=1079bp|location=Sequence derived from alignment at F-serratus_M_contig6988:9069..10147- (Fucus serratus male)
AGGGAAATTCCTTGAAATGGTCCGGCAGCAGCTTAGCTGTCCCAGGATTC CACCGAGATGAGGAGCGCTAGCGCCGAAAACCTTCTGTACATCAAGGAAG ATCTAATCATTCCGCATGTGAGCCCCTCCCTTTTTTTTAAGCGTTGAAAA CGCTTTTGCAGGTGGTTGGACGAGGGAAAATCATCTGGTAGTCTATGACT TGACGAAATAGATCGGTAAGTCTTGGCTTCGATTACACCCTAGAGGGCTA AGTAGGTAACACCTGCCATAAACTATCACAATCGCTGCCCCTGGACTTGT CACTGAGCTATTTAGCTACCACAGCAAACCTAATCCAACCGCACACCTAA GCATATGCGTTAGGGCGGGGGGGCTGGCGAATCACGCTGAAAAAACAAAA ACAGAAAAACTGATGTTCGTGGTTTCAGTATATGTTGGTGGACGTTGCTC CCCCTCCCCTCTTCCCTCATTTTTTTAGCGTCATGGCGCGTGGTTGGAAG AACTTCTCTTTTTACCACCTGATCGTCACAAGGGCCAGGGGAAAGTCCGG CCCGCTGTTCCACTTAGACGTGCACGACGACATTCGCATCGTACACTATA CGCGAGTCGAGGAGGACAAGAGCCATCCGGGCAAGGTAGGTATGCGCTCC ACGCGCTCCCGAGCCAGCTGACGTCCCGCGCGCGTGTGTGTCTGTGTGTG TGTGTGTGTGTTTATTTAATTGCACATAACCGCGCAATCCGGCCCTGCCG TCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGGATCAAT GATACTTATTACGAAAACCTCTGGTCAGACGCGACAAAGGGAACACGCAC ACTTACACACACACCATCCAGCACTGGCCCTAAAATGTCGTGCACGGCTG TTATTTGGTACAGCGACCCATACCTCGATGCCTGAAGCCGTCTAGTTCCT ATCCACGCGTTGCTCTTTCCCACCGTACTCGTTGACGATTTTGCAGTACG ATCCCCACACGGACTACAGCACGTGTACCACCCATGGGGGCGAGATCAAC GCGAAATAGGCCCACTGGTCAGTTCCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6988:9069..10147-

>mRNA_F-serratus_M_contig6988.18100.1 ID=mRNA_F-serratus_M_contig6988.18100.1|Name=mRNA_F-serratus_M_contig6988.18100.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig6988:9069..10147- (Fucus serratus male)
ATGAGGAGCGCTAGCGCCGAAAACCTTCTGTACATCAAGGAAGATCTAAT
CATTCCGCATATGAGGAGCGCTAGCGCCGAAAACCTTCTGTACATCAAGG
AAGATCTAATCATTCCGCATCGTCATGGCGCGTGGTTGGAAGAACTTCTC
TTTTTACCACCTGATCGTCACAAGGGCCAGGGGAAAGTCCGGCCCGCTGT
TCCACTTAGACGTGCACGACGACATTCGCATCGTACACTATACGCGAGTC
GAGGAGGACAAGAGCCATCCGGGCAAGCGTCATGGCGCGTGGTTGGAAGA
ACTTCTCTTTTTACCACCTGATCGTCACAAGGGCCAGGGGAAAGTCCGGC
CCGCTGTTCCACTTAGACGTGCACGACGACATTCGCATCGTACACTATAC
GCGAGTCGAGGAGGACAAGAGCCATCCGGGCAAGTACGATCCCCACACGG
ACTACAGCACGTGTACCACCCATGGGGGCGAGATCAACGCGAAATAGGCC
CACTGGTCAGTTCCTAATACGATCCCCACACGGACTACAGCACGTGTACC
ACCCATGGGGGCGAGATCAACGCGAAATAGGCCCACTGGTCAGTTCCTAA
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