mRNA_F-serratus_M_contig6975.18079.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6975.18079.1
Unique NamemRNA_F-serratus_M_contig6975.18079.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6975.18079.1 vs. uniprot
Match: A0A6H5LP07_9PHAE (SMP-LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LP07_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-10
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  351 RSYLKREGTSLLKATTTLASRTTHGVCRAVNVTGTAASVVTGGVFKLAGAAVLDVVDGMEYAS 539
            RS L+REG SLL++  T+ +RTT+G+ RAVNVTGTAASVV GG FKLAGAAVLD VD   + +
Sbjct:  142 RSRLRREGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVDTWRFVA 204
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BLAST of mRNA_F-serratus_M_contig6975.18079.1 vs. uniprot
Match: A0A836CIY7_9STRA (SMP-LTD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.720e-8
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 3 
Query:  351 RSYLKREGTSLLKATTTLASRTTHGVCRAVNVTGTAASVVTGGVFKLAGAAVLDVVDGMEYASGKS----PVEVP----GVTGEIRPVKQ 596
            +S L+REG  +      ++   +HGVCRAVNVTGT A+ V G +FKLAGAAV+D   G+EYA  ++    P++VP    GVT   + +K+
Sbjct:   86 KSQLQREGKVVFGKLFKVSRHASHGVCRAVNVTGTTAATVAGSLFKLAGAAVMDASQGLEYAQARACAAAPMKVPVLDKGVTLVAKSLKK 175
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6975.18079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LP07_9PHAE1.240e-1065.08SMP-LTD domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CIY7_9STRA8.720e-844.44SMP-LTD domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6975contigF-serratus_M_contig6975:15441..18219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size775
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6975.18079.1prot_F-serratus_M_contig6975.18079.1Fucus serratus malepolypeptideF-serratus_M_contig6975 15461..18043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932126.73539-UTR-F-serratus_M_contig6975:15440..154601622932126.73539-UTR-F-serratus_M_contig6975:15440..15460Fucus serratus maleUTRF-serratus_M_contig6975 15441..15460 +
1690964160.6558993-UTR-F-serratus_M_contig6975:15440..154601690964160.6558993-UTR-F-serratus_M_contig6975:15440..15460Fucus serratus maleUTRF-serratus_M_contig6975 15441..15460 +
1622932126.7956035-UTR-F-serratus_M_contig6975:18043..182191622932126.7956035-UTR-F-serratus_M_contig6975:18043..18219Fucus serratus maleUTRF-serratus_M_contig6975 18044..18219 +
1690964160.704808-UTR-F-serratus_M_contig6975:18043..182191690964160.704808-UTR-F-serratus_M_contig6975:18043..18219Fucus serratus maleUTRF-serratus_M_contig6975 18044..18219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932126.7504122-CDS-F-serratus_M_contig6975:15460..157921622932126.7504122-CDS-F-serratus_M_contig6975:15460..15792Fucus serratus maleCDSF-serratus_M_contig6975 15461..15792 +
1690964160.6687238-CDS-F-serratus_M_contig6975:15460..157921690964160.6687238-CDS-F-serratus_M_contig6975:15460..15792Fucus serratus maleCDSF-serratus_M_contig6975 15461..15792 +
1622932126.7646105-CDS-F-serratus_M_contig6975:17363..175301622932126.7646105-CDS-F-serratus_M_contig6975:17363..17530Fucus serratus maleCDSF-serratus_M_contig6975 17364..17530 +
1690964160.6772025-CDS-F-serratus_M_contig6975:17363..175301690964160.6772025-CDS-F-serratus_M_contig6975:17363..17530Fucus serratus maleCDSF-serratus_M_contig6975 17364..17530 +
1622932126.7793841-CDS-F-serratus_M_contig6975:17963..180431622932126.7793841-CDS-F-serratus_M_contig6975:17963..18043Fucus serratus maleCDSF-serratus_M_contig6975 17964..18043 +
1690964160.6882727-CDS-F-serratus_M_contig6975:17963..180431690964160.6882727-CDS-F-serratus_M_contig6975:17963..18043Fucus serratus maleCDSF-serratus_M_contig6975 17964..18043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6975.18079.1

>prot_F-serratus_M_contig6975.18079.1 ID=prot_F-serratus_M_contig6975.18079.1|Name=mRNA_F-serratus_M_contig6975.18079.1|organism=Fucus serratus male|type=polypeptide|length=193bp
MPSSVFRITTTSSGSNDTSYNGGTGSNLKPVSSPPSNSTIQTTPHTINAD
DIIGEVNSTSRRKRNGGGSDGSSFEANDVEGVYQSTLVYPSPRKETPTSS
SAPSRRKSVKRSYLKREGTSLLKATTTLASRTTHGVCRAVNVTGTAASVV
TGGVFKLAGAAVLDVVDGMEYASGKSPVEVPGVTGEIRPVKQ*
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mRNA from alignment at F-serratus_M_contig6975:15441..18219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6975.18079.1 ID=mRNA_F-serratus_M_contig6975.18079.1|Name=mRNA_F-serratus_M_contig6975.18079.1|organism=Fucus serratus male|type=mRNA|length=2779bp|location=Sequence derived from alignment at F-serratus_M_contig6975:15441..18219+ (Fucus serratus male)
AAAAAATCGCACTCGAGGCGATGCCGTCGTCAGTCTTCCGCATCACAACA
ACAAGCAGCGGCAGCAACGACACCAGTTACAACGGTGGCACTGGAAGCAA
TCTGAAGCCCGTCTCGTCACCACCCTCCAATAGCACGATACAAACAACCC
CTCACACCATCAACGCGGATGATATCATCGGCGAGGTGAACTCTACCTCT
CGCAGAAAACGAAACGGAGGCGGCAGCGATGGCAGTAGTTTTGAAGCAAA
TGACGTGGAGGGAGTCTACCAATCGACGCTGGTGTATCCATCTCCACGTA
AAGAGACGCCCACGTCCTCTTCGGCGCCAAGCAGACGCAAGAGTGTCAAA
AGGTGAGTTTTGATGGCAATGTTGAGTGTGTACCCCACCCGAGACTGTCA
ACAAATTCCTTCTGTCTCACGTTCAAATAAAAATCTGAACGCACCTAGAC
CTTCTGAGCATCCCCCTCTCAggGGGGAAAATGTCAAAACGTTTACCTGG
TAGGTGGGATCGTAGGCTGCAAATACAAAACCTCTTCACGCAACAATGAG
GAGGATTGAGATCGTGAGAATCGCTGTGTCGGGATCCTCCCAAACGATCC
CGCGCGTTCAAAGAAAAATCTGAACGCATCTAAAATCTAAACCTGCTGAG
CATCCACCCAATCAGGGGGGGGAAATTGCTTGGCGCCTTACTTGCATCGG
ATGATCAACCCTTACCTCGAAGCAACGGAACTGCTGGCTCGATCCTTGTT
GAAGTTGAACGTCCCAAACATGTACGGCACAGTTCAGTAATAACGATGAT
GGTGCTCGGTACGCTGTAGTAAGTGACAGTACTTGTAACTTGTAATTTTC
TCAAACTCATATCATTTTCGTAGGCACTTCCAGTTACGTATGAAGGGCGG
AGACGTCACAGACAGATGTGTAATGATCACACGCACACAAACGGTACTAA
AGCACATCTACTCTTAGTTCTTCGTCAGGTCATACTTAGTTTCCGAGATG
GTTCATCCCGTGAGCAAGCATCAGAATTAGCCTAAGTGTGGAGAATGAGC
AGGCTGACACGGGACGGGACGGCCGAACCCGTCTCGCGAAACCAAGTGAT
CAGGCGCGAGCGGGGACAGGAAATATTCATATTCATTTGCCCTGTTCAGC
TGACCACGAGCAGGATTGGCGACCTTACCCGGTTGATCCATACTCTGCTG
TATGCGATAACTTCATATCAATAGTGGGTGTAGTAAAGAGAGGCGTGTAT
TAGTTGGTCCATGGTGACCTGCTAAGGCAGCACTCGTTCGGAACTACCTT
GAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGG
TACGCCATTGCGTGACCCAGTAAACTCGGGACTTACCCGATGGCGTATGA
CGCTTAGATATAAATATATGGACGCCGCCGCGGAACTCGGGAGGAATCCC
GTAAGTAAGCACCAGATTCAGTCTGAGTATGGAGATGAGCAGGCTGACGC
GGGACGGGACTGCCGAAATCGTCTCGCGAGACCAAATTCTCAGACACGAA
CGCGGACAGGGGAATCTTATTTTCCCTGTTCAGCTGACCACGAGCAGGAT
TGGCAACCTTACCCGCTTGATCCATACTCTTGCTATATGTGTGAACATAC
TACGTAGTTGGCACAGAATAGTAGATTAGATTTACGTCCTTGAATCTGTT
GTATCGAAGCGCGCCCGTATTTCTGTGCTTCGAAGTGTTGTCGATGCAGC
GTTGTATGCGATCGCACTAGTACCGTCGCCGCCTCCTTAATGAATTCGCC
CTTAGGTTGGTACAGACCTTACGGAGGCCCAATCACCTAATCGCGCGTGA
CTTTCGCAATGCGCTCGCTGGTGAGAAATCGATGGACCTTGTATTGCCCT
TTGTTTGTGCTGGGGCGGAAAAGATCGTACCTCAAGCGTGAGGGGACCAG
CCTGCTGAAGGCCACCACCACGCTCGCGTCTCGAACAACGCACGGCGTGT
GCCGCGCTGTCAACGTCACCGGGACGGCCGCCTCCGTGGTCACGGGCGGC
GTGTTCAAGCTGGCGGGGGCGGCAGTACTCGACGTAGTCGGTAAGCTCGA
AGAGGCGTCAGAACCTCCCTTCCCTTCCCGTCGTGTCTCTTTTTTCTTCT
CTTTTTCTTCCTCCCGCTCCCTCTTGGGGGAGGAGAAGGGGATATTGCAG
CTTACAGCAGTGCGTGGAGATGAGGTTTGGTTTGCGAGGCGTTTTATTTT
TCTGTGGCATGCGCTCGTGCCCGAGATGTTTACGCTCTTTTGAACGTTTA
TGTTGCTTCACTCGAAGTAGGTTGTGTTGGAGCGAGATGAATATCCGTGG
AGCGAATGGCCTGAACGAATTATCCTCTTGGTGCAAATGCATTGAGCTAT
TATATTTGATACGCGTAGCAGAGTTCCATTGCAGCCAAGACTCTTAATCA
TTTCTCCACCCCCCCCCCGCCCCCCTTGAACGAAAATGCCTTGCACGGTG
ACCGCTTTGCCCCTCACCACCAGACGGCATGGAATATGCCAGTGGAAAGT
CCCCAGTAGAGGTACCCGGCGTCACGGGTGAGATACGACCTGTAAAACAA
TAATTGAGGGGATTATGCCACGTCCGTTGCCCTTCCTCATATAGTATTTC
AATCTTTTTTCGTTCTCACGGAACGAGTGGCGGCCAGCTGCCCCCAAAAT
GAGGAGAGCGTTTGTGCTGTAAACGGTTACTCTGTATGTGGTGTTCGGTG
GGATGAGCTTGGAGTGTTGATCGATAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6975:15441..18219+

>mRNA_F-serratus_M_contig6975.18079.1 ID=mRNA_F-serratus_M_contig6975.18079.1|Name=mRNA_F-serratus_M_contig6975.18079.1|organism=Fucus serratus male|type=CDS|length=1158bp|location=Sequence derived from alignment at F-serratus_M_contig6975:15441..18219+ (Fucus serratus male)
ATGCCGTCGTCAGTCTTCCGCATCACAACAACAAGCAGCGGCAGCAACGA
CACCAGTTACAACGGTGGCACTGGAAGCAATCTGAAGCCCGTCTCGTCAC
CACCCTCCAATAGCACGATACAAACAACCCCTCACACCATCAACGCGGAT
GATATCATCGGCGAGGTGAACTCTACCTCTCGCAGAAAACGAAACGGAGG
CGGCAGCGATGGCAGTAGTTTTGAAGCAAATGACGTGGAGGGAGTCTACC
AATCGACGCTGGTGTATCCATCTCCACGTAAAGAGACGCCCACGTCCTCT
TCGGCGCCAAGCAGACGCAAGAGTGTCAAAAGATGCCGTCGTCAGTCTTC
CGCATCACAACAACAAGCAGCGGCAGCAACGACACCAGTTACAACGGTGG
CACTGGAAGCAATCTGAAGCCCGTCTCGTCACCACCCTCCAATAGCACGA
TACAAACAACCCCTCACACCATCAACGCGGATGATATCATCGGCGAGGTG
AACTCTACCTCTCGCAGAAAACGAAACGGAGGCGGCAGCGATGGCAGTAG
TTTTGAAGCAAATGACGTGGAGGGAGTCTACCAATCGACGCTGGTGTATC
CATCTCCACGTAAAGAGACGCCCACGTCCTCTTCGGCGCCAAGCAGACGC
AAGAGTGTCAAAAGATCGTACCTCAAGCGTGAGGGGACCAGCCTGCTGAA
GGCCACCACCACGCTCGCGTCTCGAACAACGCACGGCGTGTGCCGCGCTG
TCAACGTCACCGGGACGGCCGCCTCCGTGGTCACGGGCGGCGTGTTCAAG
CTGGCGGGGGCGGCAGTACTCGACGTAGTCGATCGTACCTCAAGCGTGAG
GGGACCAGCCTGCTGAAGGCCACCACCACGCTCGCGTCTCGAACAACGCA
CGGCGTGTGCCGCGCTGTCAACGTCACCGGGACGGCCGCCTCCGTGGTCA
CGGGCGGCGTGTTCAAGCTGGCGGGGGCGGCAGTACTCGACGTAGTCGAC
GGCATGGAATATGCCAGTGGAAAGTCCCCAGTAGAGGTACCCGGCGTCAC
GGGTGAGATACGACCTGTAAAACAATAAACGGCATGGAATATGCCAGTGG
AAAGTCCCCAGTAGAGGTACCCGGCGTCACGGGTGAGATACGACCTGTAA
AACAATAA
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