mRNA_F-serratus_M_contig6901.18000.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6901.18000.1
Unique NamemRNA_F-serratus_M_contig6901.18000.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 1.250e-126
Identity = 183/250 (73.20%), Postives = 206/250 (82.40%), Query Frame = 1
Query:    7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYYDGYS 756
            +Q VLE  LS RFQTYVPV+ AGRTDTGVH+VGQAVHFDLP+ANEDL QL YSMNQMMP DVRVWNMSVAPPSSP Q E+G PWS+MLNARGK YSY LFVG + SPL+RLYR HAS  A SP++V+ + + +P  VG+HDFAGFSNEV KR+ L++ +G  EFNT RTVYSA+ IDEG GNIRLDFHL+GALYRMVRNMVGALLA+ AG+ EPEVI EI  T VRDS  IY APAHGLTL TV YDGY 
Sbjct:  163 VQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYDGYG 412          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: B8CDY0_THAPS (tRNA pseudouridine synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY0_THAPS)

HSP 1 Score: 183 bits (465), Expect = 8.800e-54
Identity = 107/264 (40.53%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    1 SALQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDL--------PDANEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGE-IPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEG-------DGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYY 744
            S +Q  +E+ L+RRF   +PV+GAGRTD GVHA GQA+HFDL        P    ++  L +SMN+MMP D+R++++ +AP +         PW A+  A+ K YSY L +G  + +P+ER  RTH  H     +D+ER+   + L+VG HDF  F  ++++ +A +R +G    NT RTV+  + I +        +GN R+DF L GALY+MVRNMVG  + +  G+ + E + E+L+   R  N   PAP  GLTL+ VYY
Sbjct:   19 STVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEI--LQHSMNRMMPLDIRMFHLQLAPYT---------PWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRTHFVH-----LDMERLESILQLYVGTHDFGAFGGQLEQ-NAKKRNDG-KRINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIPDRKDNPSKPAPPEGLTLECVYY 264          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: F0Y1Q5_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q5_AURAN)

HSP 1 Score: 182 bits (461), Expect = 1.730e-52
Identity = 109/241 (45.23%), Postives = 138/241 (57.26%), Query Frame = 1
Query:   55 VPVLGAGRTDTGVHAVGQAVHFDLPDA---NEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGE-IPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNE---VDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDS-NRIYPAPAHGLTLQTVYYDGY 753
            +P LGA RTD GVHA GQ  H DLP A      L  L + +N+++P D RV ++  AP   P QA  GLPW A+ NA GK Y+Y L        PL RLYR H ++ A   VD  R+  A+  FVGEHDFA F+N    VD   A R        +T R++ SA  +DEG G+  L F L+GALY+MVRN+VGA +A+  G    + IP +L  G R + N    APA GL L+ VYYD Y
Sbjct:   92 IPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHVAYRA---VDFGRLDDALACFVGEHDFAAFANNAPGVDPSGAAR--------STTRSIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 321          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN)

HSP 1 Score: 179 bits (453), Expect = 1.770e-51
Identity = 108/241 (44.81%), Postives = 135/241 (56.02%), Query Frame = 1
Query:   55 VPVLGAGRTDTGVHAVGQAVHFDLPDA---NEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGE-IPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNE---VDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDS-NRIYPAPAHGLTLQTVYYDGY 753
            +P LGA RTD GVHA GQ  H DLP A      L  L + +N+++P D RV ++  AP   P QA  GLPW A+ NA GK Y+Y L        PL RLYR    H A   VD  R+  A+  FVGEHDFA F+N    +D   A R        +T R + SA  +DEG G+  L F L+GALY+MVRN+VGA +A+  G    + IP +L  G R + N    APA GL L+ VYYD Y
Sbjct:   76 IPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYR---GHVAYRDVDFGRLDDALSCFVGEHDFAAFANNAPGLDPSGAAR--------STTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.430e-51
Identity = 112/270 (41.48%), Postives = 146/270 (54.07%), Query Frame = 1
Query:    7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANEDLG---------QLTYSMNQMMPPDVRVWNMSVAPPSSPSQ----AERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTG---------VRDSNRIYPAPAHGLTLQTVYYDG 750
            +Q  +E  LSRRF   V ++GAGRTD GVHA GQA HFDL    +++G         QL  S+N M+  D+RVWN   APP S  +     ER   W  + NA  KLYSY +       PL R  RTH       P ++E +R A+  F G HDF  F+  +D   A  R  G     T RTVY+ + ++EG+GN R+DF L GALY+MVRNM+G  LA+  G+ E + + E L            VR  N+  PA   GLTL+ VY+DG
Sbjct:  114 IQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDL--RADEIGVADSKCFDLQLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVF----DPTNIELLRTALQHFEGTHDFRAFAGAID---ANERKSG-KVLGTIRTVYAVNLVEEGNGNYRVDFLLKGALYKMVRNMMGTALAVAQGRLEEDRLLEFLHHDSSEGKVLQFVRKDNKCKPAAPEGLTLEHVYFDG 373          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH)

HSP 1 Score: 178 bits (452), Expect = 7.950e-51
Identity = 102/255 (40.00%), Postives = 141/255 (55.29%), Query Frame = 1
Query:    7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDAN----EDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFP-EFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGV-RDSNRIYPAPAHGLTLQTVYYDGY 753
            +Q  +   LS+R    V + GAGRTD GVHA GQ +HFDL D      + +    + +NQM+P D+RV+NMS+APP +  Q   G P+ A  +A GK Y Y     +   P+ R   TH         D   +   +  FVG HDFA F N+V  +  ++  E  P E++T RT+YS   IDEG G  R++FH+  ALY+M+RNMVGA +++  GQ   E I ++L     R +N   P P  GL L+ VYYD Y
Sbjct:  101 IQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDSIPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYRE----YDYSTLPDCLQCFVGPHDFACFGNKV--KQFVKDFETKPIEYDTMRTIYSIQHIDEGSGYYRIEFHIKSALYKMIRNMVGACVSVAKGQITKEDIVQMLVNPTQRINNPAIPVPPEGLILEHVYYDHY 349          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO)

HSP 1 Score: 176 bits (447), Expect = 1.780e-50
Identity = 106/267 (39.70%), Postives = 150/267 (56.18%), Query Frame = 1
Query:    7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDA-NEDLGQLTYSMNQMMPPDVRVWNMSVAPP--SSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFI--DEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGV---------------RDSNRIYPAPAHGLTLQTVYYD 747
            +Q  LED L +R    V ++GAGRTDTGVHA GQA+HFDL    +E L Q+ +S+N M+P DV +WN+S+AP   +  +Q  +   W+ + N+ GKLYSY L +  + SPLER +R H        VD+  ++R +  + G HDF  F+  ++   A +R  G    +T RTVYSA++I  DE  G  R++FHL GALY+ VRNMVG  +         E   ++L                   R+ N+  PAP  GLTL+ VY+D
Sbjct:   48 VQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALE---ANQRRSG-RTVSTVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFD 310          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR)

HSP 1 Score: 173 bits (439), Expect = 5.770e-49
Identity = 107/264 (40.53%), Postives = 146/264 (55.30%), Query Frame = 1
Query:    7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDAN-----EDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQA--ERG------LPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEF--NTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYP--APAHGLTLQTVYYD 747
            +Q  LED L R+F   + V+GA RTDTGVHA GQA+HFD+P A      E   +  Y++NQM+PPDVRV  +SVAP   P +   E G       PW A+ NA+GKLY+Y +    +  PL RLYR H     +     E +R A   FVG HDF+ F+N  +           P    N  R ++SA  I EG G  R++F +NGA+YRM+RN++G +L++  G  +   I  +  +  R   R+ P  APA GL L+ V YD
Sbjct:   79 VQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNSTNPPPGF-----VPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASKDR---RLVPKSAPAKGLCLEKVIYD 334          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.170e-47
Identity = 105/260 (40.38%), Postives = 144/260 (55.38%), Query Frame = 1
Query:    7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANED--------LGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGV-----RDSNRIYPAPAHGLTLQTVYYD 747
            +Q  LE  L +RFQ  + VLGA RTD GVH+ GQ VHFDLP +           +  L Y +NQM+P DVRV+ ++  P  SP Q ++GLPWSA +NAR KLY+Y L   ++ +PL+   R H       PVD+  +   +           FS++ DK +AL  A G  + +T RTV          G I +D  L+GALY+MVR MVGA +A+ AG+ +  VI   L +G       D +   PAPA GLTL+ V+Y+
Sbjct:  104 VQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLW-PVDLGVLEATL----------AFSSKADKSAALVAAAGRGDRDTVRTVVRITLRRGAPGYIDIDVLLDGALYKMVRYMVGAAVAVAAGRMDARVITTSLLSGNWEGSGADKSAAAPAPACGLTLEEVFYE 352          
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A7S2D9Q6_9EUKA (tRNA pseudouridine synthase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D9Q6_9EUKA)

HSP 1 Score: 161 bits (408), Expect = 6.840e-45
Identity = 104/256 (40.62%), Postives = 142/256 (55.47%), Query Frame = 1
Query:    4 ALQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDL-PDANEDLG-------QLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHAS-HTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYY 744
            A+   LE  L  R Q  V V+GAGRTD GVHA GQAVHFDL P   + +         L   +N ++P DVRV ++  AP    +    G  W A L A GKLYSY +       PLER +R H   +     +D++ +R       G+ D A F+N        R A+     +TRR++   D +DEG GN R +FH+  ALY+MVRNM+G LLA+GA + +  V+PE++ +  RD     PAPAHGLTL++V+Y
Sbjct:   13 AVANELERALGTRLQQSVRVVGAGRTDAGVHARGQAVHFDLLPLTRKGISPGYPQSCDLERGLNALLPADVRVADVEEAPEVDAA----GRRWHARLWATGKLYSYRISNACPFDPLERRHRHHVKCYRGGKGLDLDAMREVASQLRGDIDCAAFANRRPGELLPREAD---VTHTRRSIRRIDLVDEGSGNWRAEFHVQSALYKMVRNMMGLLLAVGAHRCDTAVVPELIASRDRDLLPP-PAPAHGLTLESVFY 260          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS62_ECTSI1.250e-12673.20tRNA pseudouridine synthase n=2 Tax=Ectocarpus Tax... [more]
B8CDY0_THAPS8.800e-5440.53tRNA pseudouridine synthase (Fragment) n=1 Tax=Tha... [more]
F0Y1Q5_AURAN1.730e-5245.23tRNA pseudouridine synthase n=1 Tax=Aureococcus an... [more]
F0Y1Q4_AURAN1.770e-5144.81tRNA pseudouridine synthase n=1 Tax=Aureococcus an... [more]
A0A7S4MSL3_9STRA5.430e-5141.48tRNA pseudouridine synthase n=1 Tax=Odontella auri... [more]
A0A482SL84_9ARCH7.950e-5140.00tRNA pseudouridine synthase A n=1 Tax=archaeon Tax... [more]
A0A1Z5KP68_FISSO1.780e-5039.70tRNA pseudouridine synthase n=1 Tax=Fistulifera so... [more]
R7QN10_CHOCR5.770e-4940.53tRNA pseudouridine synthase n=1 Tax=Chondrus crisp... [more]
A0A836CB05_9STRA1.170e-4740.38tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
A0A7S2D9Q6_9EUKA6.840e-4540.63tRNA pseudouridine synthase n=1 Tax=Haptolina brev... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6901contigF-serratus_M_contig6901:8971..9914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.9
Seed ortholog evalue1.2e-100
Seed eggNOG ortholog2880.D7FS62
KEGG koko:K06173
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0101@1,KOG4393@2759
EC5.4.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size759
Cds size759
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.4734154-CDS-F-serratus_M_contig6901:8970..91561622932111.4734154-CDS-F-serratus_M_contig6901:8970..9156Fucus serratus maleCDSF-serratus_M_contig6901 8971..9156 +
1690964152.6557665-CDS-F-serratus_M_contig6901:8970..91561690964152.6557665-CDS-F-serratus_M_contig6901:8970..9156Fucus serratus maleCDSF-serratus_M_contig6901 8971..9156 +
1622932111.490892-CDS-F-serratus_M_contig6901:9341..99141622932111.490892-CDS-F-serratus_M_contig6901:9341..9914Fucus serratus maleCDSF-serratus_M_contig6901 9342..9914 +
1690964152.6706374-CDS-F-serratus_M_contig6901:9341..99141690964152.6706374-CDS-F-serratus_M_contig6901:9341..9914Fucus serratus maleCDSF-serratus_M_contig6901 9342..9914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6901.18000.1prot_F-serratus_M_contig6901.18000.1Fucus serratus malepolypeptideF-serratus_M_contig6901 8971..9914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6901.18000.1

>prot_F-serratus_M_contig6901.18000.1 ID=prot_F-serratus_M_contig6901.18000.1|Name=mRNA_F-serratus_M_contig6901.18000.1|organism=Fucus serratus male|type=polypeptide|length=253bp
SALQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANEDLG
QLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYH
LFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNE
VDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVR
NMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYYDG
YS*
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mRNA from alignment at F-serratus_M_contig6901:8971..9914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6901.18000.1 ID=mRNA_F-serratus_M_contig6901.18000.1|Name=mRNA_F-serratus_M_contig6901.18000.1|organism=Fucus serratus male|type=mRNA|length=944bp|location=Sequence derived from alignment at F-serratus_M_contig6901:8971..9914+ (Fucus serratus male)
TCGGCACTGCAGAAAGTACTTGAAGACACGCTCTCTCGTCGATTTCAGAC CTACGTTCCTGTTTTAGGCGCTGGGAGAACAGACACGGGAGTTCACGCCG TTGGGCAGGCGGTGCACTTCGATCTACCCGATGCCAACGAAGACTTGGGA CAGCTAACGTACTCCATGAATCAGATGATGCCTCCGGTGAGGGCCTGAAG TTGACAAGATGACGTTCGGTGTTTCCTTCTTATGTTTCAGTGGGTGGAGG TATTGGCTGAGGCTTGTGGATTCAGCAGCGGCCAGAGCTTTTGCACCGCC GTGTATTGGAGACAGTATTGATACGCACCGTTGATTCCCCTCCCATAAAA TCGAATGTGTAACTCACGCAGGACGTTCGAGTATGGAACATGTCGGTAGC GCCGCCGAGCTCCCCGTCGCAAGCAGAAAGAGGCTTACCCTGGTCTGCCA TGCTCAATGCGCGCGGAAAGTTGTATAGCTACCACCTCTTTGTGGGTGAA ATCCCGAGCCCCCTGGAACGACTATACCGGACCCACGCCAGCCACACCGC CCGGTCACCGGTTGACGTGGAGCGGATTCGGCGGGCGATGCCTCTGTTTG TAGGAGAACATGACTTCGCAGGGTTTTCTAATGAAGTTGATAAAAGAAGC GCGCTTCGAAGGGCAGAGGGCTTTCCCGAGTTCAACACCCGGCGAACTGT CTACTCTGCTGATTTCATTGATGAAGGAGACGGGAATATCCGTCTGGACT TTCATTTGAACGGAGCGTTATATCGCATGGTTAGGAACATGGTGGGAGCG TTGCTCGCGATAGGCGCCGGACAATTCGAGCCCGAAGTTATCCCGGAAAT CTTAAGGACGGGTGTTAGGGATTCGAACAGAATATATCCAGCTCCGGCGC ATGGGCTTACGTTGCAGACGGTGTACTACGACGGCTACAGTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6901:8971..9914+

>mRNA_F-serratus_M_contig6901.18000.1 ID=mRNA_F-serratus_M_contig6901.18000.1|Name=mRNA_F-serratus_M_contig6901.18000.1|organism=Fucus serratus male|type=CDS|length=1518bp|location=Sequence derived from alignment at F-serratus_M_contig6901:8971..9914+ (Fucus serratus male)
TCGGCACTGCAGAAAGTACTTGAAGACACGCTCTCTCGTCGATTTCAGAC
CTACGTTCCTGTTTTAGGCGCTGGGAGAACAGACACGGGAGTTCACGCCG
TTGGGCAGGCGGTGCACTTCGATCTACCCGATGCCAACGAAGACTTGGGA
CAGCTAACGTACTCCATGAATCAGATGATGCCTCCGTCGGCACTGCAGAA
AGTACTTGAAGACACGCTCTCTCGTCGATTTCAGACCTACGTTCCTGTTT
TAGGCGCTGGGAGAACAGACACGGGAGTTCACGCCGTTGGGCAGGCGGTG
CACTTCGATCTACCCGATGCCAACGAAGACTTGGGACAGCTAACGTACTC
CATGAATCAGATGATGCCTCCGGACGTTCGAGTATGGAACATGTCGGTAG
CGCCGCCGAGCTCCCCGTCGCAAGCAGAAAGAGGCTTACCCTGGTCTGCC
ATGCTCAATGCGCGCGGAAAGTTGTATAGCTACCACCTCTTTGTGGGTGA
AATCCCGAGCCCCCTGGAACGACTATACCGGACCCACGCCAGCCACACCG
CCCGGTCACCGGTTGACGTGGAGCGGATTCGGCGGGCGATGCCTCTGTTT
GTAGGAGAACATGACTTCGCAGGGTTTTCTAATGAAGTTGATAAAAGAAG
CGCGCTTCGAAGGGCAGAGGGCTTTCCCGAGTTCAACACCCGGCGAACTG
TCTACTCTGCTGATTTCATTGATGAAGGAGACGGGAATATCCGTCTGGAC
TTTCATTTGAACGGAGCGTTATATCGCATGGTTAGGAACATGGTGGGAGC
GTTGCTCGCGATAGGCGCCGGACAATTCGAGCCCGAAGTTATCCCGGAAA
TCTTAAGGACGGGTGTTAGGGATTCGAACAGAATATATCCAGCTCCGGCG
CATGGGCTTACGTTGCAGACGGTGTACTACGACGGCTACAGTTGAGACGT
TCGAGTATGGAACATGTCGGTAGCGCCGCCGAGCTCCCCGTCGCAAGCAG
AAAGAGGCTTACCCTGGTCTGCCATGCTCAATGCGCGCGGAAAGTTGTAT
AGCTACCACCTCTTTGTGGGTGAAATCCCGAGCCCCCTGGAACGACTATA
CCGGACCCACGCCAGCCACACCGCCCGGTCACCGGTTGACGTGGAGCGGA
TTCGGCGGGCGATGCCTCTGTTTGTAGGAGAACATGACTTCGCAGGGTTT
TCTAATGAAGTTGATAAAAGAAGCGCGCTTCGAAGGGCAGAGGGCTTTCC
CGAGTTCAACACCCGGCGAACTGTCTACTCTGCTGATTTCATTGATGAAG
GAGACGGGAATATCCGTCTGGACTTTCATTTGAACGGAGCGTTATATCGC
ATGGTTAGGAACATGGTGGGAGCGTTGCTCGCGATAGGCGCCGGACAATT
CGAGCCCGAAGTTATCCCGGAAATCTTAAGGACGGGTGTTAGGGATTCGA
ACAGAATATATCCAGCTCCGGCGCATGGGCTTACGTTGCAGACGGTGTAC
TACGACGGCTACAGTTGA
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