mRNA_F-serratus_M_contig6901.18000.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI) HSP 1 Score: 374 bits (960), Expect = 1.250e-126 Identity = 183/250 (73.20%), Postives = 206/250 (82.40%), Query Frame = 1
Query: 7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYYDGYS 756
+Q VLE LS RFQTYVPV+ AGRTDTGVH+VGQAVHFDLP+ANEDL QL YSMNQMMP DVRVWNMSVAPPSSP Q E+G PWS+MLNARGK YSY LFVG + SPL+RLYR HAS A SP++V+ + + +P VG+HDFAGFSNEV KR+ L++ +G EFNT RTVYSA+ IDEG GNIRLDFHL+GALYRMVRNMVGALLA+ AG+ EPEVI EI T VRDS IY APAHGLTL TV YDGY
Sbjct: 163 VQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYDGYG 412
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: B8CDY0_THAPS (tRNA pseudouridine synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY0_THAPS) HSP 1 Score: 183 bits (465), Expect = 8.800e-54 Identity = 107/264 (40.53%), Postives = 157/264 (59.47%), Query Frame = 1
Query: 1 SALQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDL--------PDANEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGE-IPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEG-------DGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYY 744
S +Q +E+ L+RRF +PV+GAGRTD GVHA GQA+HFDL P ++ L +SMN+MMP D+R++++ +AP + PW A+ A+ K YSY L +G + +P+ER RTH H +D+ER+ + L+VG HDF F ++++ +A +R +G NT RTV+ + I + +GN R+DF L GALY+MVRNMVG + + G+ + E + E+L+ R N PAP GLTL+ VYY
Sbjct: 19 STVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEI--LQHSMNRMMPLDIRMFHLQLAPYT---------PWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRTHFVH-----LDMERLESILQLYVGTHDFGAFGGQLEQ-NAKKRNDG-KRINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIPDRKDNPSKPAPPEGLTLECVYY 264
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: F0Y1Q5_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q5_AURAN) HSP 1 Score: 182 bits (461), Expect = 1.730e-52 Identity = 109/241 (45.23%), Postives = 138/241 (57.26%), Query Frame = 1
Query: 55 VPVLGAGRTDTGVHAVGQAVHFDLPDA---NEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGE-IPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNE---VDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDS-NRIYPAPAHGLTLQTVYYDGY 753
+P LGA RTD GVHA GQ H DLP A L L + +N+++P D RV ++ AP P QA GLPW A+ NA GK Y+Y L PL RLYR H ++ A VD R+ A+ FVGEHDFA F+N VD A R +T R++ SA +DEG G+ L F L+GALY+MVRN+VGA +A+ G + IP +L G R + N APA GL L+ VYYD Y
Sbjct: 92 IPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHVAYRA---VDFGRLDDALACFVGEHDFAAFANNAPGVDPSGAAR--------STTRSIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 321
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN) HSP 1 Score: 179 bits (453), Expect = 1.770e-51 Identity = 108/241 (44.81%), Postives = 135/241 (56.02%), Query Frame = 1
Query: 55 VPVLGAGRTDTGVHAVGQAVHFDLPDA---NEDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGE-IPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNE---VDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDS-NRIYPAPAHGLTLQTVYYDGY 753
+P LGA RTD GVHA GQ H DLP A L L + +N+++P D RV ++ AP P QA GLPW A+ NA GK Y+Y L PL RLYR H A VD R+ A+ FVGEHDFA F+N +D A R +T R + SA +DEG G+ L F L+GALY+MVRN+VGA +A+ G + IP +L G R + N APA GL L+ VYYD Y
Sbjct: 76 IPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYR---GHVAYRDVDFGRLDDALSCFVGEHDFAAFANNAPGLDPSGAAR--------STTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA) HSP 1 Score: 179 bits (455), Expect = 5.430e-51 Identity = 112/270 (41.48%), Postives = 146/270 (54.07%), Query Frame = 1
Query: 7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANEDLG---------QLTYSMNQMMPPDVRVWNMSVAPPSSPSQ----AERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTG---------VRDSNRIYPAPAHGLTLQTVYYDG 750
+Q +E LSRRF V ++GAGRTD GVHA GQA HFDL +++G QL S+N M+ D+RVWN APP S + ER W + NA KLYSY + PL R RTH P ++E +R A+ F G HDF F+ +D A R G T RTVY+ + ++EG+GN R+DF L GALY+MVRNM+G LA+ G+ E + + E L VR N+ PA GLTL+ VY+DG
Sbjct: 114 IQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDL--RADEIGVADSKCFDLQLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVF----DPTNIELLRTALQHFEGTHDFRAFAGAID---ANERKSG-KVLGTIRTVYAVNLVEEGNGNYRVDFLLKGALYKMVRNMMGTALAVAQGRLEEDRLLEFLHHDSSEGKVLQFVRKDNKCKPAAPEGLTLEHVYFDG 373
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH) HSP 1 Score: 178 bits (452), Expect = 7.950e-51 Identity = 102/255 (40.00%), Postives = 141/255 (55.29%), Query Frame = 1
Query: 7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDAN----EDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFP-EFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGV-RDSNRIYPAPAHGLTLQTVYYDGY 753
+Q + LS+R V + GAGRTD GVHA GQ +HFDL D + + + +NQM+P D+RV+NMS+APP + Q G P+ A +A GK Y Y + P+ R TH D + + FVG HDFA F N+V + ++ E P E++T RT+YS IDEG G R++FH+ ALY+M+RNMVGA +++ GQ E I ++L R +N P P GL L+ VYYD Y
Sbjct: 101 IQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDSIPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYRE----YDYSTLPDCLQCFVGPHDFACFGNKV--KQFVKDFETKPIEYDTMRTIYSIQHIDEGSGYYRIEFHIKSALYKMIRNMVGACVSVAKGQITKEDIVQMLVNPTQRINNPAIPVPPEGLILEHVYYDHY 349
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO) HSP 1 Score: 176 bits (447), Expect = 1.780e-50 Identity = 106/267 (39.70%), Postives = 150/267 (56.18%), Query Frame = 1
Query: 7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDA-NEDLGQLTYSMNQMMPPDVRVWNMSVAPP--SSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFI--DEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGV---------------RDSNRIYPAPAHGLTLQTVYYD 747
+Q LED L +R V ++GAGRTDTGVHA GQA+HFDL +E L Q+ +S+N M+P DV +WN+S+AP + +Q + W+ + N+ GKLYSY L + + SPLER +R H VD+ ++R + + G HDF F+ ++ A +R G +T RTVYSA++I DE G R++FHL GALY+ VRNMVG + E ++L R+ N+ PAP GLTL+ VY+D
Sbjct: 48 VQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALE---ANQRRSG-RTVSTVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFD 310
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR) HSP 1 Score: 173 bits (439), Expect = 5.770e-49 Identity = 107/264 (40.53%), Postives = 146/264 (55.30%), Query Frame = 1
Query: 7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDAN-----EDLGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQA--ERG------LPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEF--NTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYP--APAHGLTLQTVYYD 747
+Q LED L R+F + V+GA RTDTGVHA GQA+HFD+P A E + Y++NQM+PPDVRV +SVAP P + E G PW A+ NA+GKLY+Y + + PL RLYR H + E +R A FVG HDF+ F+N + P N R ++SA I EG G R++F +NGA+YRM+RN++G +L++ G + I + + R R+ P APA GL L+ V YD
Sbjct: 79 VQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNSTNPPPGF-----VPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASKDR---RLVPKSAPAKGLCLEKVIYD 334
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.170e-47 Identity = 105/260 (40.38%), Postives = 144/260 (55.38%), Query Frame = 1
Query: 7 LQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANED--------LGQLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHASHTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGV-----RDSNRIYPAPAHGLTLQTVYYD 747
+Q LE L +RFQ + VLGA RTD GVH+ GQ VHFDLP + + L Y +NQM+P DVRV+ ++ P SP Q ++GLPWSA +NAR KLY+Y L ++ +PL+ R H PVD+ + + FS++ DK +AL A G + +T RTV G I +D L+GALY+MVR MVGA +A+ AG+ + VI L +G D + PAPA GLTL+ V+Y+
Sbjct: 104 VQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLW-PVDLGVLEATL----------AFSSKADKSAALVAAAGRGDRDTVRTVVRITLRRGAPGYIDIDVLLDGALYKMVRYMVGAAVAVAAGRMDARVITTSLLSGNWEGSGADKSAAAPAPACGLTLEEVFYE 352
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Match: A0A7S2D9Q6_9EUKA (tRNA pseudouridine synthase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D9Q6_9EUKA) HSP 1 Score: 161 bits (408), Expect = 6.840e-45 Identity = 104/256 (40.62%), Postives = 142/256 (55.47%), Query Frame = 1
Query: 4 ALQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDL-PDANEDLG-------QLTYSMNQMMPPDVRVWNMSVAPPSSPSQAERGLPWSAMLNARGKLYSYHLFVGEIPSPLERLYRTHAS-HTARSPVDVERIRRAMPLFVGEHDFAGFSNEVDKRSALRRAEGFPEFNTRRTVYSADFIDEGDGNIRLDFHLNGALYRMVRNMVGALLAIGAGQFEPEVIPEILRTGVRDSNRIYPAPAHGLTLQTVYY 744
A+ LE L R Q V V+GAGRTD GVHA GQAVHFDL P + + L +N ++P DVRV ++ AP + G W A L A GKLYSY + PLER +R H + +D++ +R G+ D A F+N R A+ +TRR++ D +DEG GN R +FH+ ALY+MVRNM+G LLA+GA + + V+PE++ + RD PAPAHGLTL++V+Y
Sbjct: 13 AVANELERALGTRLQQSVRVVGAGRTDAGVHARGQAVHFDLLPLTRKGISPGYPQSCDLERGLNALLPADVRVADVEEAPEVDAA----GRRWHARLWATGKLYSYRISNACPFDPLERRHRHHVKCYRGGKGLDLDAMREVASQLRGDIDCAAFANRRPGELLPREAD---VTHTRRSIRRIDLVDEGSGNWRAEFHVQSALYKMVRNMMGLLLAVGAHRCDTAVVPELIASRDRDLLPP-PAPAHGLTLESVFY 260 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6901.18000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6901.18000.1 >prot_F-serratus_M_contig6901.18000.1 ID=prot_F-serratus_M_contig6901.18000.1|Name=mRNA_F-serratus_M_contig6901.18000.1|organism=Fucus serratus male|type=polypeptide|length=253bp SALQKVLEDTLSRRFQTYVPVLGAGRTDTGVHAVGQAVHFDLPDANEDLGback to top mRNA from alignment at F-serratus_M_contig6901:8971..9914+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6901.18000.1 ID=mRNA_F-serratus_M_contig6901.18000.1|Name=mRNA_F-serratus_M_contig6901.18000.1|organism=Fucus serratus male|type=mRNA|length=944bp|location=Sequence derived from alignment at F-serratus_M_contig6901:8971..9914+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6901:8971..9914+ >mRNA_F-serratus_M_contig6901.18000.1 ID=mRNA_F-serratus_M_contig6901.18000.1|Name=mRNA_F-serratus_M_contig6901.18000.1|organism=Fucus serratus male|type=CDS|length=1518bp|location=Sequence derived from alignment at F-serratus_M_contig6901:8971..9914+ (Fucus serratus male)back to top |