mRNA_F-serratus_M_contig69.17985.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17985.1
Unique NamemRNA_F-serratus_M_contig69.17985.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 8.860e-61
Identity = 95/150 (63.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R +VD EQ +KACAA+  GMSVR AA  F V R +I  R  GKVAM+ KVG  T++++EEE+++EDILLFAAR+FL+VGRV LR+AVR+LCNDGR+ PW+  KGPGK W+ GF +R+PRV+ERST IYEANRITE++EPR+ +FYE W
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERW 150          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5KKS3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS3_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 9.880e-59
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R RVDA+QA+KAC AVRGGMSVR AA  + +DR ++ RRL G+VAMD KVGPGTVM+EEEEN++ED LL+A R+ L+V R+ L E VR LC D RKTPW+  KGPGK W+ GFL+R+PRV ER+T IYEANR+T+  EPRI  FY  W
Sbjct:   15 MGRRRVDAQQAQKACEAVRGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKW 163          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.480e-58
Identity = 94/150 (62.67%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R +VD E+ +KA AA+  GMSVR AA  F V R +I  R  GKVAM+ KVGP T+++ EEE+++EDILL AAR+FL+V RV LR+AVR+LCNDGR+ PW+  KGPGK W+ GFL+R+PRV+ERSTHIYEANRITE++EPR+ +FYE W
Sbjct:    1 MTRCKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTHIYEANRITEDEEPRMVQFYERW 150          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 2.900e-57
Identity = 95/150 (63.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R +VD EQ +KACAA+  GMSVR AA  F V R +I  R  GKVAM+ KVG  T++++EEE+++EDILLFAAR+FL+VGRV LR+AVR+LCNDGR+ PW+  KGPGK W+ GF +R+PRV+ERST IYEANRITE++EPR+ +FYE W
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERW 150          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.620e-56
Identity = 93/150 (62.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R +VD E+ +KA AA+  GMSVR AA  F V R +I  R  GKVAM+ KVGP T+++ EEE+++EDILL AAR+FL+V RV LR+AVR+LCNDGR+ PW+  KGPGK W+ GFL+R+PRV+ERST IYEANRITE++EPR+ +FYE W
Sbjct:    1 MTRRKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEPRMVQFYERW 150          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 6.860e-55
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R RVDA+QA+KAC AVRGGMSVR AA  + +DR ++ RRL G+VAMD KVGPGTVM+EEEEN++ED LL+A R+ L+V R+ L E VR LC D RKTPW+  KGPGK W+ GFL+R+PRV ER+T IYEANR+T+  EPRI  FY  W
Sbjct:    1 MGRRRVDAQQAQKACEAVRGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKW 149          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5JMR3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR3_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 7.650e-55
Identity = 86/156 (55.13%), Postives = 121/156 (77.56%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGG-MSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVWREYVK 465
            M R RVD EQA+KA  AVR G MS+R AA  + +   ++  R+  KVA+D +VGPGTV+++EEE+ VED+L++A+RHFL +GR +LR+AVR +C DGRK PW+  KGPG +W++GF+ R+P +SER+THIYEANRI E+ EPR++ FY+ W EY++
Sbjct:   15 MGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLE 170          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.140e-53
Identity = 91/150 (60.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW 450
            M R +VD EQ +KACAA+  GMSVR AA  F V R +I  R  GK AM+ KVGP T++++EEE+++E ILLFAAR+FL+V RV LR+AVR+LCNDGR+ PW+  KGPGK W+ GFL+R+ RV+ERST I+EAN ITE++EPR+ +FYE W
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIVDRRRGKAAMNAKVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFLRRHLRVAERSTRIFEANMITEDEEPRMVQFYERW 150          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5LAK0_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAK0_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.510e-53
Identity = 83/154 (53.90%), Postives = 119/154 (77.27%), Query Frame = 1
Query:    7 RLRVDAEQAKKACAAVRGG-MSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVWREYVK 465
            R+  D EQA+KA  AVR G MS+R AA  + +   ++  R+  KVA+D +VGPGTV+++EEE+ VED+L++A+RHFL +GR +LR+AVR +C DGRK PW+  KGPG +W++GF+ R+P +SER+THIYEANRI E+ EPR++ FY+ W EY++
Sbjct:   32 RVNQDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLE 185          
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Match: A0A6H5JPC4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC4_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 7.460e-53
Identity = 87/155 (56.13%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    1 MVRLRVDAEQAKKACAAVRGG-MSVRSAAARFQVDRNAITRRLSGKVAMDGKVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTPWEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVWREYV 462
            M R RVD EQA+KA  AVR G MSVR AA  + + RN++  RL+ KVA+D KV PGTV+++EEE  VED+L++A+R  L +GR +L++AVR++C DGRK  W+  KGPG  W+Q FLKR+P + ER+THIYEANRI E+DE R+  FYE W  Y+
Sbjct:   15 MGRTRVDPEQAQKAVDAVRSGQMSVRGAAEAYGLSRNSLHSRLTNKVAIDAKVAPGTVLSKEEEEFVEDVLVYASRRLLLLGRRELKDAVRKICLDGRKVRWDPDKGPGDRWLQWFLKRHPELPERATHIYEANRINEDDESRLEAFYETWDAYL 169          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRY4_9PHAE8.860e-6163.33HTH psq-type domain-containing protein n=4 Tax=Ect... [more]
A0A6H5KKS3_9PHAE9.880e-5964.00HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5K547_9PHAE3.480e-5862.67HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JFM5_9PHAE2.900e-5763.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ62_9PHAE3.620e-5662.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV04_9PHAE6.860e-5564.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMR3_9PHAE7.650e-5555.13HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5JRA3_9PHAE1.140e-5360.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAK0_9PHAE4.510e-5353.90HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5JPC4_9PHAE7.460e-5356.13HTH psq-type domain-containing protein n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:677807..678271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score67.0
Seed ortholog evalue8.8e-09
Seed eggNOG ortholog69319.XP_008558637.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tc5 transposase DNA-binding domain
EggNOG OGs2CXPE@1,2RYUX@2759,39MS3@33154,3CPBT@33208,3E5W4@33213,3SZPF@50557,42A7T@6656,46MZF@7399
COG Functional cat.S
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932108.5957077-CDS-F-serratus_M_contig69:677806..6782711622932108.5957077-CDS-F-serratus_M_contig69:677806..678271Fucus serratus maleCDSF-serratus_M_contig69 677807..678271 -
1690964151.1471205-CDS-F-serratus_M_contig69:677806..6782711690964151.1471205-CDS-F-serratus_M_contig69:677806..678271Fucus serratus maleCDSF-serratus_M_contig69 677807..678271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17985.1prot_F-serratus_M_contig69.17985.1Fucus serratus malepolypeptideF-serratus_M_contig69 677807..678271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17985.1

>prot_F-serratus_M_contig69.17985.1 ID=prot_F-serratus_M_contig69.17985.1|Name=mRNA_F-serratus_M_contig69.17985.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MVRLRVDAEQAKKACAAVRGGMSVRSAAARFQVDRNAITRRLSGKVAMDG
KVGPGTVMTEEEENAVEDILLFAARHFLSVGRVQLREAVRQLCNDGRKTP
WEASKGPGKAWVQGFLKRYPRVSERSTHIYEANRITENDEPRIRRFYEVW
REYVK
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mRNA from alignment at F-serratus_M_contig69:677807..678271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17985.1 ID=mRNA_F-serratus_M_contig69.17985.1|Name=mRNA_F-serratus_M_contig69.17985.1|organism=Fucus serratus male|type=mRNA|length=465bp|location=Sequence derived from alignment at F-serratus_M_contig69:677807..678271- (Fucus serratus male)
ATGGTTCGACTTAGGGTGGACGCAGAGCAGGCTAAAAAGGCCTGTGCTGC AGTGCGAGGTGGTATGTCAGTTAGGTCTGCCGCAGCTCGATTTCAGGTGG ACAGGAACGCGATCACACGCCGCCTGAGTGGCAAGGTGGCCATGGATGGC AAGGTCGGCCCCGGGACTGTCATGACCGAAGAAGAAGAGAATGCGGTGGA AGATATTTTGCTTTTCGCTGCTCGTCACTTCTTGTCTGTGGGTCGGGTAC AACTGAGAGAGGCCGTGAGACAGCTCTGCAATGACGGTCGCAAGACCCCT TGGGAAGCCAGCAAAGGCCCGGGGAAGGCATGGGTTCAGGGCTTCCTCAA GAGGTACCCGCGGGTATCGGAGCGAAGCACCCACATCTACGAGGCCAACC GAATTACCGAGAACGATGAGCCGCGCATCCGAAGGTTCTACGAGGTGTGG AGAGAGTACGTCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:677807..678271-

>mRNA_F-serratus_M_contig69.17985.1 ID=mRNA_F-serratus_M_contig69.17985.1|Name=mRNA_F-serratus_M_contig69.17985.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig69:677807..678271- (Fucus serratus male)
ATGGTTCGACTTAGGGTGGACGCAGAGCAGGCTAAAAAGGCCTGTGCTGC
AGTGCGAGGTGGTATGTCAGTTAGGTCTGCCGCAGCTCGATTTCAGGTGG
ACAGGAACGCGATCACACGCCGCCTGAGTGGCAAGGTGGCCATGGATGGC
AAGGTCGGCCCCGGGACTGTCATGACCGAAGAAGAAGAGAATGCGGTGGA
AGATATTTTGCTTTTCGCTGCTCGTCACTTCTTGTCTGTGGGTCGGGTAC
AACTGAGAGAGGCCGTGAGACAGCTCTGCAATGACGGTCGCAAGACCCCT
TGGGAAGCCAGCAAAGGCCCGGGGAAGGCATGGGTTCAGGGCTTCCTCAA
GAGGTACCCGCGGGTATCGGAGCGAAGCACCCACATCTACGAGGCCAACC
GAATTACCGAGAACGATGAGCCGCGCATCCGAAGGTTCTACGAGGTGTGG
AGAGAGTACGTCAAGATGGTTCGACTTAGGGTGGACGCAGAGCAGGCTAA
AAAGGCCTGTGCTGCAGTGCGAGGTGGTATGTCAGTTAGGTCTGCCGCAG
CTCGATTTCAGGTGGACAGGAACGCGATCACACGCCGCCTGAGTGGCAAG
GTGGCCATGGATGGCAAGGTCGGCCCCGGGACTGTCATGACCGAAGAAGA
AGAGAATGCGGTGGAAGATATTTTGCTTTTCGCTGCTCGTCACTTCTTGT
CTGTGGGTCGGGTACAACTGAGAGAGGCCGTGAGACAGCTCTGCAATGAC
GGTCGCAAGACCCCTTGGGAAGCCAGCAAAGGCCCGGGGAAGGCATGGGT
TCAGGGCTTCCTCAAGAGGTACCCGCGGGTATCGGAGCGAAGCACCCACA
TCTACGAGGCCAACCGAATTACCGAGAACGATGAGCCGCGCATCCGAAGG
TTCTACGAGGTGTGGAGAGAGTACGTCAAG
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