mRNA_F-serratus_M_contig679.17799.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig679.17799.1
Unique NamemRNA_F-serratus_M_contig679.17799.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig679.17799.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.610e-54
Identity = 106/169 (62.72%), Postives = 122/169 (72.19%), Query Frame = 3 
Query:  624 MENWTVDPADV-EGPYAPDCSSRAAEGFYSGALLGAVWGVIGRASSNEAMPSKSPSIGALGKSFSPHPPPRQNVGGGGAVGHVRVFARGVAGYATSALSTAGVFGVFVGVLNAGTCACERLRGEKDWINNACGGTAAGLSVALLSRHTRNPRMLAAHAVGGAAITSIVA 1127
            ME+W V+P ++    YAPDCSSRAAEGFY GAL GAVWGVIGRA+    +PS +P++G L         P   +   G    VR F RG AGY  +A STAGVFGVFVG++NAGTC CERLRG+KDW NNA GG AAGLSVALLSRHTR P+MLAAH  G AAITS+VA
Sbjct:    1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPS-TPAMGELKPPSGLQAQPAPGLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig679.17799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI2.610e-5462.72Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig679contigF-serratus_M_contig679:120167..124802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1889
Cds size588
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932069.3886619-UTR-F-serratus_M_contig679:120166..1207351622932069.3886619-UTR-F-serratus_M_contig679:120166..120735Fucus serratus maleUTRF-serratus_M_contig679 120167..120735 +
1690964130.7774863-UTR-F-serratus_M_contig679:120166..1207351690964130.7774863-UTR-F-serratus_M_contig679:120166..120735Fucus serratus maleUTRF-serratus_M_contig679 120167..120735 +
1622932069.4862416-UTR-F-serratus_M_contig679:124070..1248021622932069.4862416-UTR-F-serratus_M_contig679:124070..124802Fucus serratus maleUTRF-serratus_M_contig679 124071..124802 +
1690964130.8443594-UTR-F-serratus_M_contig679:124070..1248021690964130.8443594-UTR-F-serratus_M_contig679:124070..124802Fucus serratus maleUTRF-serratus_M_contig679 124071..124802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932069.4022763-CDS-F-serratus_M_contig679:120735..1207741622932069.4022763-CDS-F-serratus_M_contig679:120735..120774Fucus serratus maleCDSF-serratus_M_contig679 120736..120774 +
1690964130.793429-CDS-F-serratus_M_contig679:120735..1207741690964130.793429-CDS-F-serratus_M_contig679:120735..120774Fucus serratus maleCDSF-serratus_M_contig679 120736..120774 +
1622932069.4156244-CDS-F-serratus_M_contig679:121771..1218861622932069.4156244-CDS-F-serratus_M_contig679:121771..121886Fucus serratus maleCDSF-serratus_M_contig679 121772..121886 +
1690964130.8049679-CDS-F-serratus_M_contig679:121771..1218861690964130.8049679-CDS-F-serratus_M_contig679:121771..121886Fucus serratus maleCDSF-serratus_M_contig679 121772..121886 +
1622932069.427749-CDS-F-serratus_M_contig679:122206..1222681622932069.427749-CDS-F-serratus_M_contig679:122206..122268Fucus serratus maleCDSF-serratus_M_contig679 122207..122268 +
1690964130.8144584-CDS-F-serratus_M_contig679:122206..1222681690964130.8144584-CDS-F-serratus_M_contig679:122206..122268Fucus serratus maleCDSF-serratus_M_contig679 122207..122268 +
1622932069.4448407-CDS-F-serratus_M_contig679:122773..1229761622932069.4448407-CDS-F-serratus_M_contig679:122773..122976Fucus serratus maleCDSF-serratus_M_contig679 122774..122976 +
1690964130.8238802-CDS-F-serratus_M_contig679:122773..1229761690964130.8238802-CDS-F-serratus_M_contig679:122773..122976Fucus serratus maleCDSF-serratus_M_contig679 122774..122976 +
1622932069.467414-CDS-F-serratus_M_contig679:123901..1240701622932069.467414-CDS-F-serratus_M_contig679:123901..124070Fucus serratus maleCDSF-serratus_M_contig679 123902..124070 +
1690964130.833749-CDS-F-serratus_M_contig679:123901..1240701690964130.833749-CDS-F-serratus_M_contig679:123901..124070Fucus serratus maleCDSF-serratus_M_contig679 123902..124070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig679.17799.1prot_F-serratus_M_contig679.17799.1Fucus serratus malepolypeptideF-serratus_M_contig679 120736..124070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig679.17799.1

>prot_F-serratus_M_contig679.17799.1 ID=prot_F-serratus_M_contig679.17799.1|Name=mRNA_F-serratus_M_contig679.17799.1|organism=Fucus serratus male|type=polypeptide|length=196bp
MTKHLQVFSTRTTAMGDGMENWTVDPADVEGPYAPDCSSRAAEGFYSGAL
LGAVWGVIGRASSNEAMPSKSPSIGALGKSFSPHPPPRQNVGGGGAVGHV
RVFARGVAGYATSALSTAGVFGVFVGVLNAGTCACERLRGEKDWINNACG
GTAAGLSVALLSRHTRNPRMLAAHAVGGAAITSIVAIATGGAAGE*
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mRNA from alignment at F-serratus_M_contig679:120167..124802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig679.17799.1 ID=mRNA_F-serratus_M_contig679.17799.1|Name=mRNA_F-serratus_M_contig679.17799.1|organism=Fucus serratus male|type=mRNA|length=4636bp|location=Sequence derived from alignment at F-serratus_M_contig679:120167..124802+ (Fucus serratus male)
CAAATCTCGAACAGAAAGTTGGTGCCGAAGAGAGATACACGAGGAAGTCA
GGCAAGAGAGAAGTGAAACGGAGAAACATACAGGTAATTCAGCGGTCTGA
ACTGCGGTTGATTAGAGTTGACTATCTGTAGAAGCAACCTTTCTTTTTCC
ACACCACTTGATGGATACTTGTACAGTATTGCCGTGTCCCTGTGAAAAAG
CTACGATCGCCGGACGAGTTCGCAACGACTTACCCTCTTGGGACCCCGAG
CTTTCAAAATTCTGCTGCGCCCCCAACCCACTCCAGAAGTACTCGCCGCT
TCTTTGTAATGGACTCAACGAGAGGAACGAATCTAAAATGATGAGCGTGC
TCCCCTCGTCGACCACAGCTTACAGAGAGAGCTTACGAATACACAAGTAA
TCGACAAACAGCGGGGCTTCAGTCGATACACTGCACTAGCACTCAGCCAG
GGATACCACATCAGTTACGAATGAACACCAATATTCGAACGTGTTGCACC
TGTCGGAAGAGTTGGTGTGCATTTTCGATGTGTGCGCGGGGTTCGTGAAC
GTCTTTCAAAGCCCAACGGATGACGAAGCATCTACAAGTATTTAGTACCA
GGACTACTGTATACACCTTTTTGTAAGATATCCATAGCATCATAACACTT
ATGATGCCTGTAGGTAACTAACATGCGCCAGTAGCTCTACTCCGGTTCTC
ATTTGCTCGTCCAATTCTCTCTGAGTCCCCGTTATATCCCGAATCAAAAC
GAGCGCGCCATGAAGGATGTGGCCTCCTCGCATATATCGCAGCACACTCT
CACGCCACGAGAGACCACGACCTCTCCTTCAAAAGAAAAAACAATACCGG
CACGGATCTCTCTCCTTTGAGTACATCGAAACGCCTCCGGGAGTTAATCG
CTCAAGACATCTACCGTACGTATGGTCACACATAAAGCAAGAGTATGGAT
AAACCGGTTGAGGTTGCCAATCCTGCTCGTTGTCAGCTAGCTGTACAGGG
AAAATGAATAATTCCCTGTCCGCGTTCGCGCCTGAGAATTAGGTCTCGCG
AGACGGGTTCGGCAGTCCTGTCCCGCGTCAGCATGCTCATCTCCATACTC
AGACTGAATCTGGTGCTTACTTACGGGATTCCTCCCGCATTCCGCGGCGG
CGTCCATCCATGTATACCGCCACCCGCCATCAGATCAGTCCCAAGTTTAT
CAGATTAAACATTTGCGTACCGATGGCGTTCACTGCCCAGACTCCGGCAG
CTCAGGGCCAGTAGTCCTCAAGGTAGTTTCAGTGCTACCTTTTCAGGTTT
CACCATGCCATTGACCAATTAATATGCTCCTCTCTTTACCACACCCACTA
TTGGTATGAAGTGGACATGTTGGAAGTACCGGCATACGAGTCCAACTGCA
TTACAAAGCCTTGAAAGAAATATCAGGGAGAAATTCGCTACAATATACAC
AACATACAATGAAGAGAAAGTTGGAATGCCGCGCACTACACGGTAGCAAG
CAGAAGGATGGGCGAAAGAGTCCTTCACCGTTTCCTGTCTCCTGAGACCA
CAAACTGCTCCCTACCTTGCCCTCTACCGCATGACGTGATGATGCCCAGG
CCAAGGCCATGGGCGACGGAATGGAAAACTGGACCGTGGACCCCGCAGAT
GTCGAGGGCCCGTACGCGCCTGATTGTTCCTCGAGGGCCGCAGAGGGTTT
CTACTCGGGGGCGTTGCTAGGTACAAAAGCTACTGTATCATGAGACCTTG
TTTCTCTCACTCTACCGCCGCTTCAATGCTTGCACGTTGGTTTCGCTCTC
CTTTCATTGCCTGCTACGGATAGCTTTGGTTGTGACGCCCACCGTAACCT
TCCTCGCGATGTGCTGCAGCTTATAGCACGCACGTTTCGAGGCGGGCGCG
AGCGACGTCGCTCCTCCGGCACATGACACGATCGCCCAACGGAAGGGGCA
CGACGAAACGCTCTGCGAGGCCCGCCAATTCAATCTCTGTCCCTGCATCC
CACCACCCGCTGTGTTTGCCCATCTGTCGTCCTTTCCAAGGGGCCGTGTG
GGGTGTAATCGGGCGCGCGTCATCGAACGAAGCCATGCCGTCGAAATCTC
CGGTGCGTTTACCCAATAATAGTTGAAGATACTGTACTTGATTTTTAGCG
TGTGCACCACCCCGCTCGTGGCCAGCCGACTGAATGCCCCCTCAAGATAT
ATGTCCTCCTCTCGCTGACGACCCCGCCCAGAATTCCCCGAGGTTTTTCG
AACCATCTTCTCGCGAATCTTCGGGCGTGCGCCGCACGAAGACGCGCAAC
GTATGGATCGGACTATCTTCCTCCACGGCTGGCAAGAAGCCACGTAGAAC
TACCGTGAAGACTGGACCCATAGAAATCACCGAGTATGCAACCACCAGGG
CTACTTACACCTTCCCAAGCGTTGTTTTCGAGGGCTTGGAGGGCGAACAT
GCTCTTGCTGACAGTCGAGCGCAGGCCGTATGACCAACGCCAACCGTTGG
TAGACCTCAAAACTTGCCGCACCCGCTCGCCCGGGATTCTTGCGTGAAGA
AGGACGACTCACCCGTCTCACCGTACGCCCTCCCTCTGATACTGCTGCGC
GTGGCAGTCGATAGGAGCGTTAGGTAAATCGTTCTCTCCCCACCCCCCGC
CTCGGCAAAATGTCGGGGGAGGGGGGGCGGTGGGACATGTCCGCGTGTTT
GCGCGGGGTGTCGCTGGCTACGCCACGTCGGCGTTGTCTACCGCTGGCGT
CTTCGGCGTCTTCGTCGGCGTTCTTAACGCGGGAACTTGCGCCTGCGAGC
GCTTACGAGGGTGAGTTTGGATGGGGAACAATGTCCCGCGTAATGCTGCA
GATAGATGCGTGAGCTTTTGAAGCACCATCTCAAGGCGTTGAAGATATCG
CGTACAGTACAAGCGCCGTATTTTTTATGGTGTCCAGTAACTCCCCAAGG
ATTTATATAACCATTTCATGAATGTATGGTCATCACTTATTGCAAGAACG
TGGATCAACCAGGTAAGGTTGCCAATCCTTCTCGTGGTCAGCTGAACAGG
GAAAATAAGTGTTTCCGCTCGCGCCTGAGAACTTGGTCTCGCGAGACCAT
TTCGGCTTTTTCCCGTCCCGCGTCACCCTGCTCATTCTCCACACTAGGGC
TGAATCTGGTGCCTACACACGGAATTGCTCCCGATTTCCGCGGCGGCGTC
CATTTATTTGTTTATGCCGCCATACGCCATTGGGTCAGTCCCGCGTTTAC
TGGATCACGCAATTGCGTACCGATGGCCTTCATTGCCGAGAGCCCACCAG
CACAGGGCCAGTAGTCCCCAAGGTAGTTTCAGTAACGGGTGCTGCCTTTT
CAGGCTTCACCACGGACCAATGAATGTGCGCCTCTTTTCCCACACCCACT
ATCCTATCATCGGTATGAAGTGGTTATATTAATAGTCATAAGTATTTGTT
TTGTTATTATTATCGGAGGCGGAATAGCCTATAAGGTACAAGGTAATGAC
ATTTCGCGCGTCGTGCAATATCGGGTTTCAAGAAAAACGATCCCGAGATG
GTTCGCGAGGTCTGCTGGGGTACGGAGCTCCTAAACTGTCCATCAAATCA
GTCGGAAATGCCTCGATAGCGCACCTGTTGCAACGTATTAGTAGCGACTT
CCGCGAAGTATTTTGCCTCGAGTTCCATCTAACGCAACATTGTATCTCTC
TTTCCCCAACACGAACCGATGTTTTTATCCGTTAGGGAGAAAGACTGGAT
AAATAACGCATGTGGAGGGACAGCGGCCGGCCTCAGCGTAGCCCTACTGT
CGAGACATACCCGCAATCCACGGATGCTGGCCGCGCATGCTGTCGGCGGC
GCCGCGATTACTTCCATCGTCGCAATAGCCACAGGCGGAGCAGCGGGCGA
ATGACAGAAAGAGGGTCTTGTACTATGATGCTAGTAATATGTAAAATGAG
GAGATGGGTATGAAACGCCTCCAAGTAAAAGGGTTAAGGTGGGGGTAAAA
TCAACCTCAAAATGGCGTTCGAATATTAATTTGCTATCTGATAATAATGG
TACTTGGATTTTATTTTACTTTTTTAGTTCAGTTATAACATTAAAAAAAA
CGCCGACAAAACGGGGCGTTTTAACAAGAAAACATTGTAGCTACAAGCGT
CGGAAGTGTGGTTGCAGCAGCGGTCGTTCCACTCCACATAACAATCCCCT
CCCGCAGAACGCCGCCCTTGGGTTAAAAAAACTCAAATATGTATATATGG
GTATCTATAGTTCTAGGGAAGGGATGGGTGCGACATGACACTCCTTATTG
ATAAAACATGATTCAATGCTCGGTCCAACGTGCGCGATTCCTTTCACGGA
AGACCATAATTTCTCACATCAAAGACTGCATTTCATGAACTTGGGGGTTG
TGTACAAACGCCGTAACGCCAACGTCACCAACACCAAACCCAACCTTGAC
AGTTCAGTTGACACGCAAAATGCACCTTGTACTTTTGCAAACGAGTTGAA
CCACGAGTTCTGCACGCCCACCACCCCCGCACACCCGACGGGAATAGCAC
GTCCACCCACACGATTTCAAGCGAGAGATCAACTCCAAGAAAATACCGAA
GGCCCTCTGACGACACTATACTGCCCTCTATGGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig679:120167..124802+

>mRNA_F-serratus_M_contig679.17799.1 ID=mRNA_F-serratus_M_contig679.17799.1|Name=mRNA_F-serratus_M_contig679.17799.1|organism=Fucus serratus male|type=CDS|length=1176bp|location=Sequence derived from alignment at F-serratus_M_contig679:120167..124802+ (Fucus serratus male)
ATGACGAAGCATCTACAAGTATTTAGTACCAGGACTACTATGACGAAGCA
TCTACAAGTATTTAGTACCAGGACTACTGCCATGGGCGACGGAATGGAAA
ACTGGACCGTGGACCCCGCAGATGTCGAGGGCCCGTACGCGCCTGATTGT
TCCTCGAGGGCCGCAGAGGGTTTCTACTCGGGGGCGTTGCTAGGCCATGG
GCGACGGAATGGAAAACTGGACCGTGGACCCCGCAGATGTCGAGGGCCCG
TACGCGCCTGATTGTTCCTCGAGGGCCGCAGAGGGTTTCTACTCGGGGGC
GTTGCTAGGGGCCGTGTGGGGTGTAATCGGGCGCGCGTCATCGAACGAAG
CCATGCCGTCGAAATCTCCGGGGCCGTGTGGGGTGTAATCGGGCGCGCGT
CATCGAACGAAGCCATGCCGTCGAAATCTCCGTCGATAGGAGCGTTAGGT
AAATCGTTCTCTCCCCACCCCCCGCCTCGGCAAAATGTCGGGGGAGGGGG
GGCGGTGGGACATGTCCGCGTGTTTGCGCGGGGTGTCGCTGGCTACGCCA
CGTCGGCGTTGTCTACCGCTGGCGTCTTCGGCGTCTTCGTCGGCGTTCTT
AACGCGGGAACTTGCGCCTGCGAGCGCTTACGAGGTCGATAGGAGCGTTA
GGTAAATCGTTCTCTCCCCACCCCCCGCCTCGGCAAAATGTCGGGGGAGG
GGGGGCGGTGGGACATGTCCGCGTGTTTGCGCGGGGTGTCGCTGGCTACG
CCACGTCGGCGTTGTCTACCGCTGGCGTCTTCGGCGTCTTCGTCGGCGTT
CTTAACGCGGGAACTTGCGCCTGCGAGCGCTTACGAGGGGAGAAAGACTG
GATAAATAACGCATGTGGAGGGACAGCGGCCGGCCTCAGCGTAGCCCTAC
TGTCGAGACATACCCGCAATCCACGGATGCTGGCCGCGCATGCTGTCGGC
GGCGCCGCGATTACTTCCATCGTCGCAATAGCCACAGGCGGAGCAGCGGG
CGAATGAGGAGAAAGACTGGATAAATAACGCATGTGGAGGGACAGCGGCC
GGCCTCAGCGTAGCCCTACTGTCGAGACATACCCGCAATCCACGGATGCT
GGCCGCGCATGCTGTCGGCGGCGCCGCGATTACTTCCATCGTCGCAATAG
CCACAGGCGGAGCAGCGGGCGAATGA
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