mRNA_F-serratus_M_contig6469.17410.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6469.17410.1
Unique NamemRNA_F-serratus_M_contig6469.17410.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.110e-14
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   13 LGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLATPVCSANGIEVTFE 267
            +G   E  TP G  DVLS+ EVI+VKHY  WK+ + QV++Y  +Y P   KRL+LFAQ G K   +YL+ A   C +  ++VTFE
Sbjct:   64 VGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHY-PHLDKRLHLFAQIGCKNTDQYLEKAKSTCDSFAVKVTFE 147          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: UPI001D2F14B2 (hypothetical protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D2F14B2)

HSP 1 Score: 69.7 bits (169), Expect = 4.710e-13
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 ISRRLGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLATPVCSANGIEVTFE 267
            +++ L    EV  PSG  D+L+ N++I+VKH + W  A+ QVI YG Y+YP+H+KR++LF  E +  +SK L L    C    I  TFE
Sbjct:   70 LAKSLNGQTEVRVPSGRIDILTSNQIIEVKHIKKWNAALGQVITYG-YHYPNHQKRIHLFGVENN--SSKIL-LIQKQCQEQNIIATFE 154          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: UPI0017825BA5 (hypothetical protein n=1 Tax=Komarekiella sp. 'clone 1' TaxID=2593771 RepID=UPI0017825BA5)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-10
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 ISRRLGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLATPVCSANGIEVTFE 267
            I +    +IEV TP+G  D+L+++E+I+VK+   WK+AV Q++ Y HYY P+H+K ++LF Q      S   QL    C    I+VT++
Sbjct:  140 IGKLANPVIEVNTPAGKIDILTDHEIIEVKNVLGWKSAVGQILIYSHYY-PNHQKIIHLFGQ----CCSNTKQLIKFHCGEFNIQVTWQ 223          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: UPI001391CB9F (hypothetical protein n=1 Tax=Nostoc sp. B(2019) TaxID=2690446 RepID=UPI001391CB9F)

HSP 1 Score: 63.2 bits (152), Expect = 4.700e-10
Identity = 31/82 (37.80%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   22 MIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLATPVCSANGIEVTFE 267
            ++EV TP G  D+L++ E+I+VK   +WK+AV Q++ YGHYY P+H+KR++LF +     + +  Q+    C    I++T++
Sbjct:  147 VVEVNTPVGKIDILTDYEIIEVKKASAWKSAVGQILVYGHYY-PNHQKRIHLFGE----CSVRTKQIIHTHCDQFNIQLTWQ 223          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: A0A2P8QK91_9CYAN (Uncharacterized protein n=2 Tax=Chroococcidiopsidales TaxID=1890505 RepID=A0A2P8QK91_9CYAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-9
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   10 RLGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLATPVCSANGIEVTFE 267
            +LG ++EV TP+G  D+L++ ++I++K  + WK A+ Q +AY  +Y P H+KR++LF   G     K L      C   G++VT E
Sbjct:  108 QLGGLVEVVTPAGRIDLLTDTQIIEIKSIQDWKAALGQTLAYSGFY-PEHQKRIHLF---GSAFELKRLSDIEAACLCFGVKVTGE 189          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: A0A1Z4KCX8_9CYAN (DNA-damage-inducible protein n=1 Tax=Calothrix brevissima NIES-22 TaxID=1973478 RepID=A0A1Z4KCX8_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 3.640e-9
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 ISRRLGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLATPVCSANGIEVTFE 267
            + ++LG   EV TP+G  D+L++ ++I+VK   SWK AV QV  Y  YY P H+KR++LF     K   ++L++    C+   I VT+E
Sbjct:  116 LQKKLGGTREVQTPAGFIDLLTDEQIIEVKKVNSWKAAVGQVEIYRDYY-PFHEKRIHLFG----KCHPEFLKIVIFHCTKRKIIVTWE 199          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: A0A2P8QSC9_9CYAN (Uncharacterized protein n=1 Tax=Chroococcidiopsis sp. CCALA 051 TaxID=869949 RepID=A0A2P8QSC9_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.080e-8
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   13 LGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLFAQEGDKIASKYLQLA 225
            LG ++EV TP+G  D+L++ E+I+VK  + WK A+ Q++ Y  +Y P H+KRL+LF      +A   +++A
Sbjct:   98 LGGLVEVITPAGRIDLLTDTEIIEVKAVKDWKAALGQILVYSGFY-PQHQKRLHLFGTASALLALADIEVA 167          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: A0A2P8QSB1_9CYAN (Uncharacterized protein n=1 Tax=Chroococcidiopsis sp. CCALA 051 TaxID=869949 RepID=A0A2P8QSB1_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-8
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   13 LGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLF 180
            LG ++EV TP+G  D+L+  E+I++K  + WK A+ Q++ Y  +Y P H+KRL+LF
Sbjct:  100 LGGLVEVATPAGRNDLLTNAEIIEIKAIKDWKAALGQILVYSGFY-PQHQKRLHLF 154          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: UPI0006982661 (MarR family transcriptional regulator n=1 Tax=Aliterella atlantica TaxID=1827278 RepID=UPI0006982661)

HSP 1 Score: 57.0 bits (136), Expect = 6.850e-8
Identity = 25/57 (43.86%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   10 RLGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLF 180
            +LG ++EV TP+G  D+L+ +E+ +VK  + WK A+ Q++ Y  +Y P H+KRL+LF
Sbjct:  110 QLGGLVEVATPAGRIDLLTNSEITEVKAIKDWKAALGQILVYSSFY-PQHQKRLHLF 165          
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Match: UPI00036DC0B9 (hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00036DC0B9)

HSP 1 Score: 57.4 bits (137), Expect = 8.130e-8
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 ISRRLGAMIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRLNLF 180
            + ++LG   EV TP+G  D+L+  ++I+VK  + WK A+ QV  YG YY PSH+KR++LF
Sbjct:  160 LKKKLGGETEVFTPAGLIDLLTAEQLIEVKEVKRWKCAIGQVETYGDYY-PSHQKRIHLF 218          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6469.17410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LP52_ECTSI4.110e-1447.06FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
UPI001D2F14B24.710e-1342.70hypothetical protein n=1 Tax=Waterburya agarophyto... [more]
UPI0017825BA51.240e-1039.33hypothetical protein n=1 Tax=Komarekiella sp. 'clo... [more]
UPI001391CB9F4.700e-1037.80hypothetical protein n=1 Tax=Nostoc sp. B(2019) Ta... [more]
A0A2P8QK91_9CYAN1.220e-937.21Uncharacterized protein n=2 Tax=Chroococcidiopsida... [more]
A0A1Z4KCX8_9CYAN3.640e-939.33DNA-damage-inducible protein n=1 Tax=Calothrix bre... [more]
A0A2P8QSC9_9CYAN1.080e-839.44Uncharacterized protein n=1 Tax=Chroococcidiopsis ... [more]
A0A2P8QSB1_9CYAN2.980e-844.64Uncharacterized protein n=1 Tax=Chroococcidiopsis ... [more]
UPI00069826616.850e-843.86MarR family transcriptional regulator n=1 Tax=Alit... [more]
UPI00036DC0B98.130e-846.67hypothetical protein n=1 Tax=Oscillatoria sp. PCC ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6469contigF-serratus_M_contig6469:8810..9076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931995.0703285-CDS-F-serratus_M_contig6469:8809..90551622931995.0703285-CDS-F-serratus_M_contig6469:8809..9055Fucus serratus maleCDSF-serratus_M_contig6469 8810..9055 -
1690964093.849688-CDS-F-serratus_M_contig6469:8809..90551690964093.849688-CDS-F-serratus_M_contig6469:8809..9055Fucus serratus maleCDSF-serratus_M_contig6469 8810..9055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931995.0922277-UTR-F-serratus_M_contig6469:9055..90761622931995.0922277-UTR-F-serratus_M_contig6469:9055..9076Fucus serratus maleUTRF-serratus_M_contig6469 9056..9076 -
1690964093.8609262-UTR-F-serratus_M_contig6469:9055..90761690964093.8609262-UTR-F-serratus_M_contig6469:9055..9076Fucus serratus maleUTRF-serratus_M_contig6469 9056..9076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6469.17410.1prot_F-serratus_M_contig6469.17410.1Fucus serratus malepolypeptideF-serratus_M_contig6469 8810..9055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6469.17410.1

>prot_F-serratus_M_contig6469.17410.1 ID=prot_F-serratus_M_contig6469.17410.1|Name=mRNA_F-serratus_M_contig6469.17410.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MIEVPTPSGSKDVLSENEVIDVKHYRSWKNAVVQVIAYGHYYYPSHKKRL
NLFAQEGDKIASKYLQLATPVCSANGIEVTFE
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mRNA from alignment at F-serratus_M_contig6469:8810..9076-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6469.17410.1 ID=mRNA_F-serratus_M_contig6469.17410.1|Name=mRNA_F-serratus_M_contig6469.17410.1|organism=Fucus serratus male|type=mRNA|length=267bp|location=Sequence derived from alignment at F-serratus_M_contig6469:8810..9076- (Fucus serratus male)
ATCTCTCGTCGCCTCGGTGCCATGATCGAGGTACCTACACCTTCGGGTTC AAAAGACGTTTTGAGCGAAAACGAGGTGATTGACGTCAAACACTACCGTT CATGGAAAAATGCAGTCGTTCAGGTGATAGCGTACGGACATTATTATTAC CCGTCGCACAAAAAACGTCTCAACCTATTTGCACAGGAGGGAGACAAGAT AGCCTCAAAATACCTCCAGTTGGCTACACCCGTGTGCTCGGCGAACGGAA TCGAGGTGACATTCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6469:8810..9076-

>mRNA_F-serratus_M_contig6469.17410.1 ID=mRNA_F-serratus_M_contig6469.17410.1|Name=mRNA_F-serratus_M_contig6469.17410.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig6469:8810..9076- (Fucus serratus male)
ATGATCGAGGTACCTACACCTTCGGGTTCAAAAGACGTTTTGAGCGAAAA
CGAGGTGATTGACGTCAAACACTACCGTTCATGGAAAAATGCAGTCGTTC
AGGTGATAGCGTACGGACATTATTATTACCCGTCGCACAAAAAACGTCTC
AACCTATTTGCACAGGAGGGAGACAAGATAGCCTCAAAATACCTCCAGTT
GGCTACACCCGTGTGCTCGGCGAACGGAATCGAGGTGACATTCGAAATGA
TCGAGGTACCTACACCTTCGGGTTCAAAAGACGTTTTGAGCGAAAACGAG
GTGATTGACGTCAAACACTACCGTTCATGGAAAAATGCAGTCGTTCAGGT
GATAGCGTACGGACATTATTATTACCCGTCGCACAAAAAACGTCTCAACC
TATTTGCACAGGAGGGAGACAAGATAGCCTCAAAATACCTCCAGTTGGCT
ACACCCGTGTGCTCGGCGAACGGAATCGAGGTGACATTCGAA
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