prot_F-serratus_M_contig6343.17248.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6343.17248.1
Unique Nameprot_F-serratus_M_contig6343.17248.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length230
Homology
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BLAST of mRNA_F-serratus_M_contig6343.17248.1 vs. uniprot
Match: A0A8B8GJU9_9HEMI (peregrin n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8GJU9_9HEMI)

HSP 1 Score: 57.0 bits (136), Expect = 8.400e-6
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0 
Query:  124 KIFDVPVDETKFTDYGQIVSHKMEVDTVKTKIKNSRYPHVAAFFSDLLLVYENAVNY-------YKKGGKLRNK 190
            +IF  PVD+ +  DYG IV H M++ T++ KIKNS Y  + AF +D  L+  N + Y       YK G K+R++
Sbjct:  627 QIFIEPVDQNEVPDYGDIVKHPMDLQTMEIKIKNSEYSSLEAFENDFNLMVSNCLAYNSKETIFYKAGIKMRDQ 700
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6343.17248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8B8GJU9_9HEMI8.400e-640.54peregrin n=1 Tax=Sipha flava TaxID=143950 RepID=A0... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 135..151
score: 24.55
coord: 151..169
score: 24.03
coord: 169..188
score: 25.0
IPR001487BromodomainSMARTSM00297bromo_6coord: 99..212
e-value: 6.9E-5
score: 32.2
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 123..184
e-value: 1.3E-13
score: 50.8
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 126..188
score: 12.085
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 88..217
e-value: 1.1E-16
score: 62.5
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 90..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6343contigF-serratus_M_contig6343:23591..25545 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6343.17248.1mRNA_F-serratus_M_contig6343.17248.1Fucus serratus malemRNAF-serratus_M_contig6343 23591..25568 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6343.17248.1 ID=prot_F-serratus_M_contig6343.17248.1|Name=mRNA_F-serratus_M_contig6343.17248.1|organism=Fucus serratus male|type=polypeptide|length=230bp
MCPGSQTRGVEAAKLPADISGAAATVGAGISRPGASLGVAGSRSGDGGGV
PERNTWSGGDVAEAAKRLPLSETQAKNMGLVAIGSDGKTRAKKLVRDLMA
RCNKAIKMLQEPTLPPTMAQFSLKIFDVPVDETKFTDYGQIVSHKMEVDT
VKTKIKNSRYPHVAAFFSDLLLVYENAVNYYKKGGKLRNKLIYEVAKALL
TLASDERTAMVREFVPQVKALRATTSSSAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf