mRNA_F-serratus_M_contig6343.17248.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6343.17248.1
Unique NamemRNA_F-serratus_M_contig6343.17248.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6343.17248.1 vs. uniprot
Match: A0A8B8GJU9_9HEMI (peregrin n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8GJU9_9HEMI)

HSP 1 Score: 57.0 bits (136), Expect = 9.470e-6
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 3 
Query:  393 KIFDVPVDETKFTDYGQIVSHKMEVDTVKTKIKNSRYPHVAAFFSDLLLVYENAVNY-------YKKGGKLRNK 593
            +IF  PVD+ +  DYG IV H M++ T++ KIKNS Y  + AF +D  L+  N + Y       YK G K+R++
Sbjct:  627 QIFIEPVDQNEVPDYGDIVKHPMDLQTMEIKIKNSEYSSLEAFENDFNLMVSNCLAYNSKETIFYKAGIKMRDQ 700
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6343.17248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8B8GJU9_9HEMI9.470e-640.54peregrin n=1 Tax=Sipha flava TaxID=143950 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6343contigF-serratus_M_contig6343:23591..25568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size714
Cds size690
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6343.17248.1prot_F-serratus_M_contig6343.17248.1Fucus serratus malepolypeptideF-serratus_M_contig6343 23591..25545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931964.280385-CDS-F-serratus_M_contig6343:23590..236891622931964.280385-CDS-F-serratus_M_contig6343:23590..23689Fucus serratus maleCDSF-serratus_M_contig6343 23591..23689 -
1690964079.2041671-CDS-F-serratus_M_contig6343:23590..236891690964079.2041671-CDS-F-serratus_M_contig6343:23590..23689Fucus serratus maleCDSF-serratus_M_contig6343 23591..23689 -
1622931964.3046935-CDS-F-serratus_M_contig6343:23996..241851622931964.3046935-CDS-F-serratus_M_contig6343:23996..24185Fucus serratus maleCDSF-serratus_M_contig6343 23997..24185 -
1690964079.2193472-CDS-F-serratus_M_contig6343:23996..241851690964079.2193472-CDS-F-serratus_M_contig6343:23996..24185Fucus serratus maleCDSF-serratus_M_contig6343 23997..24185 -
1622931964.3238776-CDS-F-serratus_M_contig6343:24754..248541622931964.3238776-CDS-F-serratus_M_contig6343:24754..24854Fucus serratus maleCDSF-serratus_M_contig6343 24755..24854 -
1690964079.230946-CDS-F-serratus_M_contig6343:24754..248541690964079.230946-CDS-F-serratus_M_contig6343:24754..24854Fucus serratus maleCDSF-serratus_M_contig6343 24755..24854 -
1622931964.3479393-CDS-F-serratus_M_contig6343:25243..255451622931964.3479393-CDS-F-serratus_M_contig6343:25243..25545Fucus serratus maleCDSF-serratus_M_contig6343 25244..25545 -
1690964079.2422388-CDS-F-serratus_M_contig6343:25243..255451690964079.2422388-CDS-F-serratus_M_contig6343:25243..25545Fucus serratus maleCDSF-serratus_M_contig6343 25244..25545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931964.3742712-UTR-F-serratus_M_contig6343:25545..255681622931964.3742712-UTR-F-serratus_M_contig6343:25545..25568Fucus serratus maleUTRF-serratus_M_contig6343 25546..25568 -
1690964079.2599423-UTR-F-serratus_M_contig6343:25545..255681690964079.2599423-UTR-F-serratus_M_contig6343:25545..25568Fucus serratus maleUTRF-serratus_M_contig6343 25546..25568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6343.17248.1

>prot_F-serratus_M_contig6343.17248.1 ID=prot_F-serratus_M_contig6343.17248.1|Name=mRNA_F-serratus_M_contig6343.17248.1|organism=Fucus serratus male|type=polypeptide|length=230bp
MCPGSQTRGVEAAKLPADISGAAATVGAGISRPGASLGVAGSRSGDGGGV
PERNTWSGGDVAEAAKRLPLSETQAKNMGLVAIGSDGKTRAKKLVRDLMA
RCNKAIKMLQEPTLPPTMAQFSLKIFDVPVDETKFTDYGQIVSHKMEVDT
VKTKIKNSRYPHVAAFFSDLLLVYENAVNYYKKGGKLRNKLIYEVAKALL
TLASDERTAMVREFVPQVKALRATTSSSAS
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mRNA from alignment at F-serratus_M_contig6343:23591..25568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6343.17248.1 ID=mRNA_F-serratus_M_contig6343.17248.1|Name=mRNA_F-serratus_M_contig6343.17248.1|organism=Fucus serratus male|type=mRNA|length=1978bp|location=Sequence derived from alignment at F-serratus_M_contig6343:23591..25568- (Fucus serratus male)
GAGCAGGGGTGGCGGGAGCGACGATGTGTCCGGGGTCGCAAACAAGAGGG
GTTGAAGCTGCGAAGTTGCCGGCAGACATCAGTGGTGCGGCAGCAACGGT
TGGAGCAGGGATCTCCAGGCCGGGAGCATCTCTCGGTGTTGCCGGATCCA
GAAGCGGGGACGGCGGTGGTGTCCCGGAGAGGAACACGTGGTCTGGAGGC
GACGTGGCGGAAGCCGCAAAGAGACTTCCTCTTTCGGAGACGCAAGCGAA
AAACATGGGCCTCGTTGCGATAGGCAGTGACGGGAAGACTCGGGCAAAGA
AGCTTGTAAGGGACCTCATGGCCAGGTGAGATTTCATGGTTCTTTGGGAG
GCTCCGGATGCTGTTTGTTTTCTGTATAGACCGTGATTTTTTGTTTGTTC
AGTGTTCCATGTGGAGAATAAATGTCTTATCCCGAAACTGTCGGTGGCGT
TTCCGAGTAGTGTGCATTTCAAGGTGTTTCTCGGTGGGGTTATAGACTCG
CGGCCTTCGCTTTGGTATGTTCCGTCTAAATTCATGAATGTTGACGGGAC
CCCTAATAATGAATTTCGAGTGTCCGTCTTAGTAAAGATCTTCTCTATAC
ACCGCGAACGCCTCGGACGGTGGTGGTTATATTTATACCAGATATGCTTG
CAGCTTATTTATATCGCTCAAGTTCTCCAGCAGTCGTGGTCGCGTCCGCT
CTCGTACTGGTCAGGTGTAACAAGGCGATCAAGATGCTTCAGGAGCCGAC
TTTGCCGCCGACAATGGCTCAGTTTTCTCTCAAGATTTTTGACGTCCCCG
TAGACGAGACAAAGGTACCAGATGACAACTACAGTATTCTGGCTCTTGTT
AGGGTGGTGCTGTAGCTTGTCCTCCGAATGACACCGTTTGTTGAGTGCGC
GGATCCTGTGCTTCTGTGTTTGACATTTTCCGTTATGTCAAACCGTGTTT
GGACCGCGATCCACGAATAGACTCTTCCGATGCCTTCCCAGAGAAGAAAA
CGACCTTTACTGCCGAGAATGTTTACTGCGAGCGAGCTTTCCTTCTCCCG
ACGAAGGCTACGAGCAATACATCGCGCTGTCACGTGCCATCTTTCCGTTC
GTTTCAAGGATCTTGTAACGACCAACCGACAGACAGGCAGGACTATTCTG
CTGTAGACTTTTGCTGCTTTACTATTATTGGCTATAATGTATATTTGATC
GGTAGTACGTAAGATTGACCGTGTGACCTAGCGAGAAGGGACTGTCTGTT
GTTATCCATAGCGACAAGCTGACGGGCGTGTGTCCCTCCTGTTCTGCCTT
TGCTGGGCGGTAAGATCCTCTCGGTCCGTCGCGTGTGTCCGTCGCCCCGC
CCGTTACTTTCCCGACGACGGTTGCACATCAAGTTTACCGACTACGGCCA
GATCGTCTCCCACAAGATGGAGGTCGACACGGTTAAGACGAAAATCAAGA
ACTCTCGCTACCCTCACGTGGCGGCGTTCTTCAGCGACCTCCTCCTGGTG
TACGAAAACGCCGTCAACTATTACAAAAAGGGTGGAAAACTGAGGAACAA
GCTCATATACGAGGTTGCGAAGGTATATATGAAAAATCGTTGTAAAAACC
ACGTATCTTACACCGGGCGGGGTCGACAGGGGCGGAGGGGAAGTGGCGAC
GACTTGGCTGCTCACCCACCCCTGTGCCTCTTCGTCCGGTTGTTGAGCGC
ATTTTTCTTTGTAAAGATTTGAAAAGAGGACCCATCCCGCTAGAACTTGG
CCAAAATCTGTGAATAGGTTGTACGCGTGGCATCCCCACGCACCCCCCAC
TTGGAGCCTTATCACGATATAATCTTAATTACTCCTGCCGTTATCGTCAC
CCCTTTCGATAATTCACTACCTCGCTCAGGCCCTCCTCACCCTTGCTTCC
GACGAGAGAACGGCCATGGTGAGAGAATTTGTCCCGCAGGTGAAGGCGCT
GCGCGCTACCACTTCCTCCTCTGCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6343:23591..25568-

>mRNA_F-serratus_M_contig6343.17248.1 ID=mRNA_F-serratus_M_contig6343.17248.1|Name=mRNA_F-serratus_M_contig6343.17248.1|organism=Fucus serratus male|type=CDS|length=1380bp|location=Sequence derived from alignment at F-serratus_M_contig6343:23591..25568- (Fucus serratus male)
ATGTGTCCGGGGTCGCAAACAAGAGGGGTTGAAGCTGCGAAGTTGCCGGC
AGACATCAGTGGTGCGGCAGCAACGGTTGGAGCAGGGATCTCCAGGCCGG
GAGCATCTCTCGGTGTTGCCGGATCCAGAAGCGGGGACGGCGGTGGTGTC
CCGGAGAGGAACACGTGGTCTGGAGGCGACGTGGCGGAAGCCGCAAAGAG
ACTTCCTCTTTCGGAGACGCAAGCGAAAAACATGGGCCTCGTTGCGATAG
GCAGTGACGGGAAGACTCGGGCAAAGAAGCTTGTAAGGGACCTCATGGCC
AGATGTGTCCGGGGTCGCAAACAAGAGGGGTTGAAGCTGCGAAGTTGCCG
GCAGACATCAGTGGTGCGGCAGCAACGGTTGGAGCAGGGATCTCCAGGCC
GGGAGCATCTCTCGGTGTTGCCGGATCCAGAAGCGGGGACGGCGGTGGTG
TCCCGGAGAGGAACACGTGGTCTGGAGGCGACGTGGCGGAAGCCGCAAAG
AGACTTCCTCTTTCGGAGACGCAAGCGAAAAACATGGGCCTCGTTGCGAT
AGGCAGTGACGGGAAGACTCGGGCAAAGAAGCTTGTAAGGGACCTCATGG
CCAGGTGTAACAAGGCGATCAAGATGCTTCAGGAGCCGACTTTGCCGCCG
ACAATGGCTCAGTTTTCTCTCAAGATTTTTGACGTCCCCGTAGACGAGAC
AAAGGTGTAACAAGGCGATCAAGATGCTTCAGGAGCCGACTTTGCCGCCG
ACAATGGCTCAGTTTTCTCTCAAGATTTTTGACGTCCCCGTAGACGAGAC
AAAGTTTACCGACTACGGCCAGATCGTCTCCCACAAGATGGAGGTCGACA
CGGTTAAGACGAAAATCAAGAACTCTCGCTACCCTCACGTGGCGGCGTTC
TTCAGCGACCTCCTCCTGGTGTACGAAAACGCCGTCAACTATTACAAAAA
GGGTGGAAAACTGAGGAACAAGCTCATATACGAGGTTGCGAAGTTTACCG
ACTACGGCCAGATCGTCTCCCACAAGATGGAGGTCGACACGGTTAAGACG
AAAATCAAGAACTCTCGCTACCCTCACGTGGCGGCGTTCTTCAGCGACCT
CCTCCTGGTGTACGAAAACGCCGTCAACTATTACAAAAAGGGTGGAAAAC
TGAGGAACAAGCTCATATACGAGGTTGCGAAGGCCCTCCTCACCCTTGCT
TCCGACGAGAGAACGGCCATGGTGAGAGAATTTGTCCCGCAGGTGAAGGC
GCTGCGCGCTACCACTTCCTCCTCTGCGTCGGCCCTCCTCACCCTTGCTT
CCGACGAGAGAACGGCCATGGTGAGAGAATTTGTCCCGCAGGTGAAGGCG
CTGCGCGCTACCACTTCCTCCTCTGCGTCG
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