mRNA_F-serratus_M_contig633.17218.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig633.17218.1
Unique NamemRNA_F-serratus_M_contig633.17218.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig633.17218.1 vs. uniprot
Match: D7G7I6_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.850e-26
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:  232 AFATLGFLAPATAFLTGAPRV-SLPTASSHTFHLSQQNMLPSNRGCDVPTSSIRHRRAARGSLSMSTETAVEQKGLVTVYHKETCPYCKEALELLEEGYSLRVTRVDLLEGEDSDKKIKQMKTFSGRNT 615
            A A    L PA+AF+T APRV SLP A         ++   ++ G          R A    LSM +     Q GLVTVYHKETCPYCK+AL LLE  YSL+VTRV++LEGEDS+KKIKQMKTFSG NT
Sbjct:    9 ASAAFASLTPASAFVTTAPRVASLPAAGQQ-----YRSFTSTHAGA---------RGAVAAPLSMMSGDG--QAGLVTVYHKETCPYCKKALALLENDYSLQVTRVNVLEGEDSEKKIKQMKTFSGANT 121
[Close]
BLAST of mRNA_F-serratus_M_contig633.17218.1 vs. uniprot
Match: A0A835ZFR3_9STRA (Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.940e-24
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  397 RAARGSLSMSTETAVEQKGLVTVYHKETCPYCKEALELLEEGYSLRVTRVDLLEGEDSDKKIKQMKTFSG-RNT 615
            RA     +MST TAVEQ+GLVTVYHKETCPYC + L LLE  Y+L V RV++LEG+DSDKKIKQM+TFSG RNT
Sbjct:   47 RAGAALTTMSTGTAVEQRGLVTVYHKETCPYCVKVLHLLENEYNLSVNRVNVLEGDDSDKKIKQMRTFSGGRNT 120
[Close]
BLAST of mRNA_F-serratus_M_contig633.17218.1 vs. uniprot
Match: A0A836CJB3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.320e-19
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:  433 TAVEQKGLVTVYHKETCPYCKEALELLEEGYSLRVTRVDLLEGEDSDKKIKQMKTFSG-RNT 615
            TA EQ GLVTVYHKETCP+CK+ LELLE  Y L VT+VD+L GEDSDK +KQM+TFSG RNT
Sbjct:    6 TATEQLGLVTVYHKETCPHCKKVLELLEGDYGLEVTKVDVL-GEDSDKVLKQMRTFSGGRNT 66
[Close]
BLAST of mRNA_F-serratus_M_contig633.17218.1 vs. uniprot
Match: A0A6S9FTA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FTA2_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 4.100e-10
Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  331 SQQNMLPSNRGCDVPTSSIRHRRAARGSLSMSTETAVEQKGLVTVYHKETCPYCKEALELLEEGYSLRVTRVDLLEGEDSDKKIKQ--MKTFSGRNT 615
            +Q N+L        PT   R    ARG +        +Q G+VT+Y K TCP+CKEA  LLE  Y L +T VD+LEGE+ ++K KQ  MK FS R T
Sbjct:   22 TQSNVLSRTYVKAAPT---RPNLGARGMMM------ADQAGIVTMYIKSTCPFCKEAKALLEGEYGLNLTVVDVLEGEEGEQKAKQRQMKQFSFRKT 109
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig633.17218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7I6_ECTSI4.850e-2653.49Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835ZFR3_9STRA7.940e-2470.27Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836CJB3_9STRA4.320e-1974.19Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A6S9FTA2_HETAK4.100e-1044.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig633contigF-serratus_M_contig633:109944..114004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-02_000430.1
Exons2
Model size617
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931957.0919697-CDS-F-serratus_M_contig633:109943..1104411622931957.0919697-CDS-F-serratus_M_contig633:109943..110441Fucus serratus maleCDSF-serratus_M_contig633 109944..110441 +
1690964075.7573023-CDS-F-serratus_M_contig633:109943..1104411690964075.7573023-CDS-F-serratus_M_contig633:109943..110441Fucus serratus maleCDSF-serratus_M_contig633 109944..110441 +
1622931957.1113017-CDS-F-serratus_M_contig633:113887..1140041622931957.1113017-CDS-F-serratus_M_contig633:113887..114004Fucus serratus maleCDSF-serratus_M_contig633 113888..114004 +
1690964075.7677824-CDS-F-serratus_M_contig633:113887..1140041690964075.7677824-CDS-F-serratus_M_contig633:113887..114004Fucus serratus maleCDSF-serratus_M_contig633 113888..114004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig633.17218.1prot_F-serratus_M_contig633.17218.1Fucus serratus malepolypeptideF-serratus_M_contig633 109944..114004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig633.17218.1

>prot_F-serratus_M_contig633.17218.1 ID=prot_F-serratus_M_contig633.17218.1|Name=mRNA_F-serratus_M_contig633.17218.1|organism=Fucus serratus male|type=polypeptide|length=205bp
ENRGIRSVVPAIPRLPSIDKLSEFNSPLLPDISLELERHRTVETQNRRWT
RVLTQQQMKPFSSRIVVVSGARRWIAFAFATLGFLAPATAFLTGAPRVSL
PTASSHTFHLSQQNMLPSNRGCDVPTSSIRHRRAARGSLSMSTETAVEQK
GLVTVYHKETCPYCKEALELLEEGYSLRVTRVDLLEGEDSDKKIKQMKTF
SGRNT
back to top

mRNA from alignment at F-serratus_M_contig633:109944..114004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig633.17218.1 ID=mRNA_F-serratus_M_contig633.17218.1|Name=mRNA_F-serratus_M_contig633.17218.1|organism=Fucus serratus male|type=mRNA|length=4061bp|location=Sequence derived from alignment at F-serratus_M_contig633:109944..114004+ (Fucus serratus male)
GAAAACCGAGGTATAAGATCAGTTGTCCCTGCCATTCCTCGCTTACCCTC
AATTGACAAACTTTCAGAGTTCAACTCTCCACTTCTTCCAGACATCTCAC
TGGAGCTCGAAAGACACCGCACAGTAGAGACGCAAAATAGACGCTGGACG
CGCGTTTTAACCCAACAACAAATGAAGCCATTTTCGAGCCGCATCGTGGT
CGTGAGCGGTGCCAGGAGATGGATTGCGTTCGCCTTCGCAACGCTCGGCT
TCCTTGCCCCGGCGACAGCGTTTCTAACCGGAGCCCCCCGCGTGAGTTTG
CCGACTGCAAGCTCACATACATTCCATCTCTCACAGCAGAACATGCTCCC
GTCGAATCGAGGTTGCGATGTTCCTACGAGCAGCATCAGGCATCGCCGTG
CTGCAAGAGGATCCCTGTCCATGTCCACGGAGACTGCGGTGGAGCAGAAA
GGACTGGTGACTGTGTACCACAAGGAAACTTGCCCCTATTGCAAGGAGGT
GAGACTGGTCGCCTCTGCTGAGTGAAGCGATTTCTTTCCGCCTCTGGCCA
AGCTCGCATGGGAAACTCGACCACAAATACGGACAAATTACTTGAGGTTA
ACACATACTGATACCTTACCGGTAAGTACGTACACGCGTGTGCATCATAC
GTACGCGCGCGTTTGTATGTGTGTGTGTTGCCATCCCATTTTTTCTGGAC
GTCAGGTTTGTGGACGTACCAGCCGGGGTCACACAGGATTTCTCCGCCTT
CCTTCTGCGGCGCCTGCCTTAATTTTTATCGCGAGAAGTATTCAGCCGTT
CCTTTCCCTCGTCGACCGTGAAGTCGAACTTTGTGTACTAGCGATTTCAT
CGTTCTCCAGTTGTTGGGCATTTTTTATTTTTTGTAGCATTATGTGCACG
ACGACCTGCTATCGGAAATCAGCCCTGTGCCTGACTCGCTCCAAGTCCTG
ACCAAAACGATCTCATGTAAAGCAGATCGAAAGTCCTGCCCAGGCGACTC
CTCGCATTTATATCCTGCCTCCAGACAAGGATCTTGTCTCGAAAGAAACA
AATGGCCCTCCGTCCAGCAGCAATCGAACGTGTGTTCGCGTTGTACCCAA
GGAGCGAGCGAGCTAAGAGTACTTTACTCCTTGCAGTGCTAGGGGAACGT
GCCAATTGTGTCCCGCGCGTGCCCTCTGAAAATAGATCCCACCTACAGCA
CAATGCTGGTACAGTACGTATGCGAGACTGCTGTTATTGAGAGAAGGTGC
TGGCCCAACGTTGGCATTCATGCTCTCTGTTGTACACGTCGGGGAAAGTC
CAGCTCGCAGAGGGAAGAAAAATCGAACCGTACCATACCTGTTACAAGTG
GGGCAAAAACCACGGGTTAGGAAAAAACGCCATGACAGGACCGTCTGTGA
GCTGCTCCTTTGCCGTGTATTTTTGTGGCCAGACCGTGGCAACGGGCCCG
ATCCTGCTCCGCCAGGCATGCCCTCGGCTGTAACCGGCGCAGAGACCTCC
AACGATCTTCACAGCCAGGTTGTAGGGTCAAATATGTGTATAGTTAATCT
GATCCAAATGGTGGAATGTGCAAGGAGTGGCACTGTCTATGAATACCATT
AATAGTATAAAAAGGGAGAGGGTGTTGTGTACACCAGTCGTTAGACTAGT
AATACCAAAAATCCCCCTTAAAACCAATTCCGGGGCGCACCTTCGGCTGG
AGGTTTTTGGCTACACATCGAAATCGACCAATACACTCCGGATTCCTGGT
CGGAAATTTTTGGTTTGACCCTCCGGACCGGGTGGGTCCAGCACGAAATG
GTGAATGATTCATTCCCGACCAGAAGTCGTAAGTGCGGCGCAACCTTCGA
CAAAAAGTGGCCTCAGTCCCACACGCCAGCAGTTGATACAAGACGGCATC
AGTGACCCTCGAGGTACAGATGAACGACACCGAGGGGGTGTTTGTAGGGT
TTGGCAGGCAGCCTTAGACCAGCTCAGACTGGTCGTGACCGACGATCAGG
TTCTCGGCCGGTGGTTGAGAGATTGGCTCGGGGCGCTTTCCACAGACGAG
GCCGTAGTAGAGAGCCGCGTCCCAAACGTGCTCGTACCCCCATCCGGTCA
ACCGACTACGAGCATACAACAGTTGGGCGTGGTGGAAGATGAATAGATAT
AGCCGGCTGATCTGAACTCGAGCAGGCTGATATTGTAGTGGCAACATTCT
TTGGAGGGCCGAACCCGTGTATGTGGCAAAATGCTGGAATGGCTTGAGTT
TTAGGGGTGAAAGGCCAATCAAAAGTCGGTGATGGCTGGATGTTTGCGAA
TTCTATGTAAGTCGAGCGTTCTGTTAAGGAAATTTGGGGTAGAGCACTGT
TGTGTGAGCAAGGGGCAGATTTCCTCTAGCCAAACTAGACCCCTCTTTTC
GAGGCGCTAGGAACTTGGCGAGTGCTTTCGTGTTCCGAACGGTCGCTTCG
ATCGCCTCACCGATCTCAGGCAGATGTGGTTTGATGCCCCGACACAGCAT
ACGTGGCCGGTGGACCCACAGAGATCCGCTCAGAGCTAAAAGGCGCACCA
AGTTTACGTCAGGACTTTGTTCGAGGAGTCATGCGCTCTCAGCGCCCCAC
CCACCCACTTGCGGCGTTTTTCTTGGCGTGGGTTGATCGTGTCCTGCGTG
TTTGGCGCTTTGTTCGGAACATCGGGGGGGGGGGGGGGGGGGGCAAACCT
CGCTGTGTTCTGATTGGTGTTGAAAAATGCCACACCATTAACAGTATAAT
TGTGCATATTACACTAGTAGTATAATGGTGCTCTAGTTGTATAGTGGTTT
CAAACCAGACTAGACTACACCCTCTTTACTGGAGTGTTCCGAGGGCTCAA
TCTTACGCCATGCAGATGACCCGATCCTCGGGTGCCGGACGTTTCCGGCG
GGCAATACTGCTGCCAGCTGTACCGGGCTTCGGAAGTAGTACATCTATAA
GAGTGAGGCAAACGATGTGGATAGCCCTGAGCCGGTTTCTTTCACAACCA
GGTCTTCTACAACCTTGAAAACGATATCTAGGCATTATAATGGGCACATC
ACTGACCGCAAAACCCGCTCATCCTGATTTGACGAAGATGTAGAGATGCT
TTCTCCACTTCGCCGAGACTGGTGTGAGCTCCAGCTTCACGATGCTCTCG
CCTAATTGAAAACGAAGGTAGGTGCGTCACTGCCCCGAGCCACCTACTAT
ACTTACCACTAAACAAAAAATAAAGGAAAactatAATAGATTGTGCGTGC
TGAAAACTTATTTTTGTCCTGGAGCCGGTCGCCCCGGTGGCTCAGTAGGT
AGGTACCTCGCAGCCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCA
AACGGTATTTTTCTCACTAAAACCTAAAAACCAAAATAAAATGCCCAACG
GGTGGAGAATGATTAATTCGTTAGTACACAAAGTTCGACTTCACGGTCGA
TGAGGGAAAGGAATGGCTGAATCCTTCTCGCGATAAAAATTAAGGCACGC
ACCGCAGAAGGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGT
GACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGGATGGGAAG
AAAACACAACACACGCTTTGTACCTAGTAATTACTTGCAACACATGTGAT
ACGACGAAGTATTGCGTGAGTTTTTATTATTTTTATTGATGCAATCCCCA
CCCATAGATAATGCCATTTTCCCACTCGAACGTGCTGTAAAAAGAGCGAA
GCAGGGCTTCGGGGCGTCGGAAGCGTTAGGTAGCAGGCATTCTTCCCTAA
ATCAACCCGGCGCATGAAGGCAGCCCCTTGCTAGCACACAAAACTATTGA
GCCTTTTTACAGGACTTGTTGTTGCTTCAGGGGTTGGTTTCATGTGTCTG
CGTGGTCGTTCCTCGCCCCGCGTCTGGCGCTGGCTATCTGGCAGGCGTTG
GAACTCCTGGAGGAGGGTTACTCCCTGCGGGTGACGCGGGTGGACTTGCT
CGAGGGGGAAGACAGCGACAAGAAAATCAAGCAGATGAAGACCTTCAGCG
GTCGAAACACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig633:109944..114004+

>mRNA_F-serratus_M_contig633.17218.1 ID=mRNA_F-serratus_M_contig633.17218.1|Name=mRNA_F-serratus_M_contig633.17218.1|organism=Fucus serratus male|type=CDS|length=1230bp|location=Sequence derived from alignment at F-serratus_M_contig633:109944..114004+ (Fucus serratus male)
GAAAACCGAGGTATAAGATCAGTTGTCCCTGCCATTCCTCGCTTACCCTC
AATTGACAAACTTTCAGAGTTCAACTCTCCACTTCTTCCAGACATCTCAC
TGGAGCTCGAAAGACACCGCACAGTAGAGACGCAAAATAGACGCTGGACG
CGCGTTTTAACCCAACAACAAATGAAGCCATTTTCGAGCCGCATCGTGGT
CGTGAGCGGTGCCAGGAGATGGATTGCGTTCGCCTTCGCAACGCTCGGCT
TCCTTGCCCCGGCGACAGCGTTTCTAACCGGAGCCCCCCGCGTGAGTTTG
CCGACTGCAAGCTCACATACATTCCATCTCTCACAGCAGAACATGCTCCC
GTCGAATCGAGGTTGCGATGTTCCTACGAGCAGCATCAGGCATCGCCGTG
CTGCAAGAGGATCCCTGTCCATGTCCACGGAGACTGCGGTGGAGCAGAAA
GGACTGGTGACTGTGTACCACAAGGAAACTTGCCCCTATTGCAAGGAGGA
AAACCGAGGTATAAGATCAGTTGTCCCTGCCATTCCTCGCTTACCCTCAA
TTGACAAACTTTCAGAGTTCAACTCTCCACTTCTTCCAGACATCTCACTG
GAGCTCGAAAGACACCGCACAGTAGAGACGCAAAATAGACGCTGGACGCG
CGTTTTAACCCAACAACAAATGAAGCCATTTTCGAGCCGCATCGTGGTCG
TGAGCGGTGCCAGGAGATGGATTGCGTTCGCCTTCGCAACGCTCGGCTTC
CTTGCCCCGGCGACAGCGTTTCTAACCGGAGCCCCCCGCGTGAGTTTGCC
GACTGCAAGCTCACATACATTCCATCTCTCACAGCAGAACATGCTCCCGT
CGAATCGAGGTTGCGATGTTCCTACGAGCAGCATCAGGCATCGCCGTGCT
GCAAGAGGATCCCTGTCCATGTCCACGGAGACTGCGGTGGAGCAGAAAGG
ACTGGTGACTGTGTACCACAAGGAAACTTGCCCCTATTGCAAGGAGGCGT
TGGAACTCCTGGAGGAGGGTTACTCCCTGCGGGTGACGCGGGTGGACTTG
CTCGAGGGGGAAGACAGCGACAAGAAAATCAAGCAGATGAAGACCTTCAG
CGGTCGAAACACCGCGTTGGAACTCCTGGAGGAGGGTTACTCCCTGCGGG
TGACGCGGGTGGACTTGCTCGAGGGGGAAGACAGCGACAAGAAAATCAAG
CAGATGAAGACCTTCAGCGGTCGAAACACC
back to top