mRNA_F-serratus_M_contig6325.17212.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6325.17212.1
Unique NamemRNA_F-serratus_M_contig6325.17212.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 1.410e-97
Identity = 185/365 (50.68%), Postives = 232/365 (63.56%), Query Frame = 1 
Query:  592 QVVLQKGLRGASLREIKEDIKVLLLIPYKGRGFKLPRLVYSDMCCNDREVFMEMYEELRAMGLEIKVEDETPADVSLPNFMLPSDVKVRCAVA--DDGDVLSSLCDEIRTQAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDYTRIEKFFGVKVAHAVDLTKLALIRKVPLGLKRSLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVSTILHSCIEEKSVPIFKEGEDLQAGDHVRLYTRTGNACVGVGVVQECEGQVWGSTGILLVPAMTTRA---K*GTEMDRTG**GLHAGRA---YPVPKQRRG 1662
            +VVLQK L+ ASLRE+K+D+K L +  Y G GFKLPRLV +D CCND+ +  E++EEL + G +  V +  P     P   LP DV +   V    D   L +  D IR QA  N G++  DIEW+I+ +GA  NPPAT QLAAGK V++  +LHGQ++   +LP  LV LLED  LT TGVGI GD TR+  F+GV+VAHAVDL  LA+ RKV LGL+R LADLC HLLG+ L KD  VRLS+WN+ DLS++QK YAALDAY   +LH  I E S  IF++ E+L  GD VRLYTR GN CVG G + E   + WG+TG  LVP   TR    +    +DR     +H  RA   YP     RG
Sbjct:  136 EVVLQKALQSASLRELKQDLKALFITRYTGGGFKLPRLVSTDECCNDKALLNEIFEELASEGHQFSVTNSVPIASECPVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLYTRAGNDCVGEGCIVEHTDETWGTTGFYLVPRRATRRFARRWAVRLDR-----VHVPRAKTLYPDATDPRG 495
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5KJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.380e-25
Identity = 63/178 (35.39%), Postives = 94/178 (52.81%), Query Frame = 3 
Query:    6 ERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQV----LWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHRRQQMVDGTVLSVDGSY 527
            E+   +F  WDAG L +LP ++ + FPFLLTKRS I++ ++  + D LVH KGF A  + +RQ+H   +    +KY + V      +G +++A+     AK    FG+FDD   + G  PS HYLR VW        V  +D          +WT  +++HR  Q  DG +L  D S+
Sbjct:   28 EKCKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAHTTKFMVDQLKYTSLVNTRRTSSGIFRSAN----LAKTPERFGSFDDSTKHGGAVPSEHYLRDVWRLYFSKLPVLEVDSV--------DWTLEEYQHRLMQRWDGDILGGDASF 193
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BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.330e-25
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1 
Query:  511 AWMARIR--GGGIDTQPFYCIMTIYNEFQQ-----VVLQKGLRGASLREIKEDIKVLLLIPYKGRGFKLPRLVYSDMCCNDREVFMEMYEELRAMGLEIKVEDETPADVSLPNFMLPSDVKVRCAVA--DDGDVLSSLCDEIRTQA 921
            A + R+R  G   DT+PF+C++T++NEF+Q     VVLQK L+  SLRE+K+D+K L +  YKG GFKLPRLV +D CCND+ +  +++EEL + G +  V +  P     P   LP DV +   V    D   L +  D  R QA
Sbjct:  123 AKLVRVRAPGAAADTKPFHCVVTLFNEFEQATQIVVVLQKALQSGSLRELKQDLKALFVTRYKGGGFKLPRLVSTDECCNDKALLNDIFEELASEGHQFSVTNSVPIASECPVLQLPPDVVLGEPVKANQDSPCLKAAVDTTRMQA 268
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.130e-24
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 3 
Query:    6 ERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQV----LWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHRRQQMVDGTVLSVDGSY 527
            E+   +F  WDAG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH K F A A+ +RQ+H   +    +KY + V      +G +++A+     A     FG+FDD   Y G  PS HYLR VW        V  +D          +WT  +++HR  Q  DG +L  D S+
Sbjct:  135 EKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSGIFRSAN----LANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSV--------DWTLEEYQHRLMQRWDGDILGGDASF 300
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.800e-24
Identity = 66/178 (37.08%), Postives = 94/178 (52.81%), Query Frame = 3 
Query:    6 ERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQV----LWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHRRQQMVDGTVLSVDGSY 527
            E+   +F  WDAG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A A+ +RQ+H   +    +KY + V      +G +++A+     AK    FG+FDD   Y G  PS HYLR V         V  +D          +WT  ++ HR  Q  DG +L  D S+
Sbjct:  169 EKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSGIFRSAN----LAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSV--------DWTLEEYHHRLMQRWDGDILGGDSSF 334
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BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.220e-23
Identity = 64/169 (37.87%), Postives = 90/169 (53.25%), Query Frame = 3 
Query:   33 WDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQV----LWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHRRQQMVDGTVLSVDGSY 527
            WDAG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A A+ +RQ+H   +    +KY + V      +G +++A+     AK    FG+FDD   Y G  PS HYLR V         V  +D          +WT  ++ HR  Q  DG +L  D S+
Sbjct:   57 WDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSGIFRSAN----LAKTPERFGSFDDSTKYGGAVPSEHYLRHVRRFYFSKLPVLEVDSV--------DWTLEEYHHRLMQRWDGDILGGDSSF 213
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.260e-23
Identity = 63/174 (36.21%), Postives = 87/174 (50.00%), Query Frame = 3 
Query:    6 ERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQVLWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHRRQQMVDGTVLSVDGSY 527
            E+   +F  W AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A A+ + Q+H   +    +KY + V          R    AK    FG+FDD   Y G  PS HYLR VW        V  +D          +WT  +++HR  Q  DG +L  D  +
Sbjct:  169 EKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRTSSGIFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEMDSV--------DWTLEEYQHRLMQRWDGDILGGDALF 334
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.120e-23
Identity = 65/174 (37.36%), Postives = 88/174 (50.57%), Query Frame = 3 
Query:    6 ERVSETFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQVLWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHRRQQMVDGTVLSVDGSY 527
            E+   +F  WDAG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A A+ +RQ+H   +    +KY + V          R    AK    FG+FDD   Y G  PS HYLR V         V  +D          +WT  ++ HR  Q  DG +L  D S+
Sbjct:   29 EKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVSTRRTSSGIFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVRRLYFSKLPVLEVDSV--------DWTLEEYHHRLMQRWDGDILGGDSSF 194
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.550e-20
Identity = 68/158 (43.04%), Postives = 87/158 (55.06%), Query Frame = 1 
Query: 1207 LALIRKVPLGLKRSLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVSTILHSCIEEKSVPIFKEGEDLQAGDHVRLYTRTGNACVGVGVVQECEGQVWGSTGILLVPAMTTRA---K*GTEMDRTG**GLHAGRA---YPVPKQRRG 1662
            +A+ RKV L  +R LADLC +LL + L KD  VRLS+WN+ DLS++QK                I E S  IF++ E++  GD VRLYTR GN CVG G + E   + WG+TGI LVP   TR    +    +DR     +H  RA   YP    RRG
Sbjct:    1 MAVERKVELWFRRGLADLCVNLLEKQLPKDPIVRLSKWNKLDLSDDQKRR--------------IGELSDSIFRDAEEMHVGDSVRLYTRAGNDCVGEGCIVEHTDETWGTTGIYLVPRRATRGFARRWAVHLDR-----VHVPRAKALYPDATDRRG 139
[Close]
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Match: D7FSB0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.940e-18
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = 3 
Query:   21 TFRGWDAGVLEQLPLFLQESFPFLLTKRSAIDLAIVREMRDDLVHSKGFKATAEALRQSHLQAYHQSHIKYLNQV----LWNGFYKTADRREATAKEALEFGAFDDPNGYDGFNPSAHYLRTVWDESQQVRHVARLDEFVSGVEGESEWTWADFRHR 479
            +F  WDAG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH K F A A+ + Q+H   +    +K  + V      +G +++A+     AK    FG FDD   Y G  PS HYLR VW       + ++L   V  V+G S WT  +++HR
Sbjct:   26 SFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEIRMVDRLADDLVHGKDFSAAAKNICQAHTTKFMVDQLKCTSLVNSRRTSSGIFRSAN----LAKTPERFG-FDDSTKYGGAVPSEHYLRDVW-----RLYFSKLP--VLEVDGVS-WTLEEYQHR 169
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6325.17212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.410e-9750.683'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KJA7_9PHAE6.380e-2535.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFL9_9PHAE7.330e-2542.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX0_9PHAE1.130e-2436.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE2.800e-2437.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT01_9PHAE1.220e-2337.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE2.260e-2336.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTU1_9PHAE3.120e-2337.363'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE5.550e-2043.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSB0_ECTSI1.940e-1838.22Uncharacterized protein n=4 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6325contigF-serratus_M_contig6325:24939..27924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue5.6e-35
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons4
Model size2214
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6325.17212.1prot_F-serratus_M_contig6325.17212.1Fucus serratus malepolypeptideF-serratus_M_contig6325 25621..27294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931956.131281-UTR-F-serratus_M_contig6325:24938..253841622931956.131281-UTR-F-serratus_M_contig6325:24938..25384Fucus serratus maleUTRF-serratus_M_contig6325 24939..25384 +
1690964075.269114-UTR-F-serratus_M_contig6325:24938..253841690964075.269114-UTR-F-serratus_M_contig6325:24938..25384Fucus serratus maleUTRF-serratus_M_contig6325 24939..25384 +
1622931956.152305-UTR-F-serratus_M_contig6325:25550..256201622931956.152305-UTR-F-serratus_M_contig6325:25550..25620Fucus serratus maleUTRF-serratus_M_contig6325 25551..25620 +
1690964075.2798302-UTR-F-serratus_M_contig6325:25550..256201690964075.2798302-UTR-F-serratus_M_contig6325:25550..25620Fucus serratus maleUTRF-serratus_M_contig6325 25551..25620 +
1622931956.2396631-UTR-F-serratus_M_contig6325:27294..279241622931956.2396631-UTR-F-serratus_M_contig6325:27294..27924Fucus serratus maleUTRF-serratus_M_contig6325 27295..27924 +
1690964075.326382-UTR-F-serratus_M_contig6325:27294..279241690964075.326382-UTR-F-serratus_M_contig6325:27294..27924Fucus serratus maleUTRF-serratus_M_contig6325 27295..27924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931956.174027-CDS-F-serratus_M_contig6325:25620..256981622931956.174027-CDS-F-serratus_M_contig6325:25620..25698Fucus serratus maleCDSF-serratus_M_contig6325 25621..25698 +
1690964075.2890172-CDS-F-serratus_M_contig6325:25620..256981690964075.2890172-CDS-F-serratus_M_contig6325:25620..25698Fucus serratus maleCDSF-serratus_M_contig6325 25621..25698 +
1622931956.1992176-CDS-F-serratus_M_contig6325:26042..268001622931956.1992176-CDS-F-serratus_M_contig6325:26042..26800Fucus serratus maleCDSF-serratus_M_contig6325 26043..26800 +
1690964075.2982185-CDS-F-serratus_M_contig6325:26042..268001690964075.2982185-CDS-F-serratus_M_contig6325:26042..26800Fucus serratus maleCDSF-serratus_M_contig6325 26043..26800 +
1622931956.2195592-CDS-F-serratus_M_contig6325:27062..272941622931956.2195592-CDS-F-serratus_M_contig6325:27062..27294Fucus serratus maleCDSF-serratus_M_contig6325 27063..27294 +
1690964075.3131459-CDS-F-serratus_M_contig6325:27062..272941690964075.3131459-CDS-F-serratus_M_contig6325:27062..27294Fucus serratus maleCDSF-serratus_M_contig6325 27063..27294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6325.17212.1

>prot_F-serratus_M_contig6325.17212.1 ID=prot_F-serratus_M_contig6325.17212.1|Name=mRNA_F-serratus_M_contig6325.17212.1|organism=Fucus serratus male|type=polypeptide|length=356bp
MARIRGGGIDTQPFYCIMTIYNEFQQVVLQKGLRGASLREIKEDIKVLLL
IPYKGRGFKLPRLVYSDMCCNDREVFMEMYEELRAMGLEIKVEDETPADV
SLPNFMLPSDVKVRCAVADDGDVLSSLCDEIRTQAAGNGGVVGFDIEWDI
ALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASL
TFTGVGINGDYTRIEKFFGVKVAHAVDLTKLALIRKVPLGLKRSLADLCS
HLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVSTILHSCIEEKSV
PIFKEGEDLQAGDHVRLYTRTGNACVGVGVVQECEGQVWGSTGILLVPAM
TTRAK*
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mRNA from alignment at F-serratus_M_contig6325:24939..27924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6325.17212.1 ID=mRNA_F-serratus_M_contig6325.17212.1|Name=mRNA_F-serratus_M_contig6325.17212.1|organism=Fucus serratus male|type=mRNA|length=2986bp|location=Sequence derived from alignment at F-serratus_M_contig6325:24939..27924+ (Fucus serratus male)
AGGACGAGCGTGTGTCGGAGACATTCAGAGGTTGGGATGCAGGAGTGCTG
GAGCAACTTCCACTGTTCTTGCAGGAGTCCTTCCCGTTCCTGTTGACCAA
GCGGTCGGCAATAGATCTGGCCATTGTACGCGAGATGCGCGATGACTTGG
TCCATTCCAAGGGGTTCAAGGCGACCGCGGAGGCTCTACGGCAGTCACAC
TTGCAGGCCTATCACCAGAGTCACATAAAGTACCTCAACCAGGTGCTGTG
GAACGGCTTCTACAAAACAGCGGATAGAAGAGAAGCTACAGCCAAAGAAG
CTTTGGAGTTCGGGGCGTTCGACGACCCGAACGGATACGACGGCTTCAAT
CCTTCCGCGCACTACTTGCGCACCGTATGGGACGAGAGTCAGCAGGTCCG
GCACGTTGCGAGACTGGATGAGTTCGTGTCCGGGGTGGAGGGAGAGGTAC
GTGTCTCCAAAGGGGGGGGGGTGGGCTCCATGTATTGCAATGAACAGAGT
CGTGCTTTCTTTTCGAGCACTTGAGAGTTTGATCAATTAAAAAAAATGAT
GAGATTTGCATTAAGACATGGATCACTCGCTTTGCCTCGCTCGTATGTCA
ATGTTCGTCCAGTCGGAATGGACCTGGGCGGATTTCCGACACAGACGGCA
GCAGATGGTTGATGGGACCGTTTTGAGCGTGGATGGCTCGTATCCGAGGC
GGCGGTATCGACACGCAGCCTTTCTACTGCATCATGACCATCTACAACGA
GTTCCAGCAGGTATGCCCCGGTTGGCTATGCCCTTTCTACTTAATCGGCC
CCAAACAAGCCACTCTTAATTTTCCCTAGCAAGTCATGTTGAACAAACAG
ACGTGGATGATTATTTGCCAACGATTGTTGGCTGTTTGAAAGATAACCAG
GCTCTGGACGTAGGACACGTAGGAATAGTCGCTGCATATCATGGTACCAT
TGTGGGCGCGTGTCGTCGGAGGTAGACTATTTTGATCAGATGCCCTATGC
AGCAGCAGGACATGGTAGAAAAAAGTCATTCGCTTGCACGCTCCGATATA
TGACAACACGCTGTTCCCCGTTCGTCGTGCTCCCTGCTGCTTTGTACATT
GCAGGTGGTTCTGCAAAAGGGTTTGCGGGGAGCCTCCCTCAGAGAGATAA
AGGAAGACATCAAAGTGCTTCTCCTCATCCCCTACAAGGGGCGTGGCTTC
AAGCTTCCCCGCCTCGTATACTCGGACATGTGCTGCAACGATAGGGAAGT
CTTCATGGAGATGTACGAAGAACTGCGAGCGATGGGGTTAGAGATTAAGG
TCGAGGACGAGACGCCGGCTGATGTGTCCCTCCCTAACTTCATGTTGCCG
TCGGACGTGAAGGTCAGGTGTGCGGTGGCCGACGACGGAGATGTTCTCTC
GTCGCTCTGCGATGAGATCCGTACACAGGCGGCGGGCAATGGCGGTGTGG
TGGGCTTTGATATCGAGTGGGATATCGCGCTTAGTGGTGCGCATGAAAAT
CCTCCGGCGACGTTCCAACTGGCAGCCGGTAAGTTCGTCTTGGTTCTGCA
AATCTTGCACGGCCAGAAGACGCCGTCGACGAAGCTTCCAGGGTCCTTAG
TCGGCCTTCTCGAGGACGCCAGCCTTACTTTCACAGGCGTCGGCATCAAT
GGAGACTACACTAGAATCGAGAAGTTCTTTGGCGTTAAAGTAGCACACGC
GGTTGACTTGACCAAGCTAGCCTTGATTCGAAAGGTGCCGCTAGGACTCA
AGCGCAGCCTGGCCGACCTGTGCTCTCATCTGCTTGGTAGAAGCCTCTCC
AAGGACGGACGCGTAAGACTTTCAAGGTGGAACCGGAAGGATCTCTCGGA
AGAACAGAAGACGTGAGTTTTCAAGTCGTGATTTGCTCTAGGGTTGCTCG
GCGTCCTTTTTTTTGTGTGTAGGCCAGGTAAAATCGGAGCTGGGGCTGTC
TAGCGACACCTCTTCGGCCAGGTAAAATCAACCTTCTTGTGATGTTGGCA
AGTTGCCCGCGCGCAAACAATCTCACCGAATTTTAGCAATACAATATCGT
TGGGACATTGCCCCCCCCCCCCCCCCGGGCGCGTGCTAAGCCTCCTCGTT
CGCTTCGTGTTTCCTTCACCAAAGGTATGCCGCATTAGATGCGTACGTGT
CCACCATCTTGCATTCCTGCATCGAGGAGAAGTCCGTTCCGATTTTCAAG
GAAGGCGAGGACTTGCAGGCTGGAGATCACGTTCGCCTTTACACGAGGAC
AGGCAACGCGTGTGTTGGGGTGGGCGTGGTGCAAGAGTGTGAGGGACAGG
TGTGGGGTAGTACAGGAATCCTTCTCGTACCTGCGATGACCACTCGCGCT
AAATAGGGTACGGAGATGGATCGTACGGGTTGATGAGGTCTTCATGCCGG
GCGCGCATACCCTGTACCCAAACAGCGACGAGGTAGGCACGGGCAACGCG
AGAGGGCAAATGGAGGGCAAAGAGGGGGGGCTTGTGCTGTGGGACGCTAG
CCGCATGCGCAAGCGCCCAACCAGCACCGCTGCTCCAGTCCCCGGGGCTG
TAGAGCACGGCCCCGTTCAGGAAGTGGGAGATGCGATAGGCGCGCCTGGG
GGTGGCACCGAGCAGGACGGGGGGCAGGCAAGCGCGGGAGGCAGTTCGTC
CGGGGCCGCCTGCACAACGCCTGGCGGCAGTGACCCACTGTTTACTACGC
CTTCGGAAGACTTTTTCAGCGGGCGCATAGCTGGCATGGAAAAGCTCAGC
TTTGCAGTGGCTGGGAAAAAGAAGGACGAAGAGGGGGAGTTTAATTCACG
CGCCAGGTCTCCCTATGGGATCGGAGCCACTTCTTTCTTCTTTTTCATTT
TTCTTCCTCCTTCTTCCTCCTTTTTTAAAGATCTTCTCATGTTCTGTTTC
CTTTCCGGATGCAGTGGGGCCGGGTTGCAATTATTTTTAGCATGTTTGGC
ACCATCAGGTGAGAATGCAATCAATCAATTCAATCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6325:24939..27924+

>mRNA_F-serratus_M_contig6325.17212.1 ID=mRNA_F-serratus_M_contig6325.17212.1|Name=mRNA_F-serratus_M_contig6325.17212.1|organism=Fucus serratus male|type=CDS|length=2136bp|location=Sequence derived from alignment at F-serratus_M_contig6325:24939..27924+ (Fucus serratus male)
ATGGCTCGTATCCGAGGCGGCGGTATCGACACGCAGCCTTTCTACTGCAT
CATGACCATCTACAACGAGTTCCAGCAGATGGCTCGTATCCGAGGCGGCG
GTATCGACACGCAGCCTTTCTACTGCATCATGACCATCTACAACGAGTTC
CAGCAGGTGGTTCTGCAAAAGGGTTTGCGGGGAGCCTCCCTCAGAGAGAT
AAAGGAAGACATCAAAGTGCTTCTCCTCATCCCCTACAAGGGGCGTGGCT
TCAAGCTTCCCCGCCTCGTATACTCGGACATGTGCTGCAACGATAGGGAA
GTCTTCATGGAGATGTACGAAGAACTGCGAGCGATGGGGTTAGAGATTAA
GGTCGAGGACGAGACGCCGGCTGATGTGTCCCTCCCTAACTTCATGTTGC
CGTCGGACGTGAAGGTCAGGTGTGCGGTGGCCGACGACGGAGATGTTCTC
TCGTCGCTCTGCGATGAGATCCGTACACAGGCGGCGGGCAATGGCGGTGT
GGTGGGCTTTGATATCGAGTGGGATATCGCGCTTAGTGGTGCGCATGAAA
ATCCTCCGGCGACGTTCCAACTGGCAGCCGGTAAGTTCGTCTTGGTTCTG
CAAATCTTGCACGGCCAGAAGACGCCGTCGACGAAGCTTCCAGGGTCCTT
AGTCGGCCTTCTCGAGGACGCCAGCCTTACTTTCACAGGCGTCGGCATCA
ATGGAGACTACACTAGAATCGAGAAGTTCTTTGGCGTTAAAGTAGCACAC
GCGGTTGACTTGACCAAGCTAGCCTTGATTCGAAAGGTGCCGCTAGGACT
CAAGCGCAGCCTGGCCGACCTGTGCTCTCATCTGCTTGGTAGAAGCCTCT
CCAAGGACGGACGCGTAAGACTTTCAAGGTGGAACCGGAAGGATCTCTCG
GAAGAACAGAAGACGTGGTTCTGCAAAAGGGTTTGCGGGGAGCCTCCCTC
AGAGAGATAAAGGAAGACATCAAAGTGCTTCTCCTCATCCCCTACAAGGG
GCGTGGCTTCAAGCTTCCCCGCCTCGTATACTCGGACATGTGCTGCAACG
ATAGGGAAGTCTTCATGGAGATGTACGAAGAACTGCGAGCGATGGGGTTA
GAGATTAAGGTCGAGGACGAGACGCCGGCTGATGTGTCCCTCCCTAACTT
CATGTTGCCGTCGGACGTGAAGGTCAGGTGTGCGGTGGCCGACGACGGAG
ATGTTCTCTCGTCGCTCTGCGATGAGATCCGTACACAGGCGGCGGGCAAT
GGCGGTGTGGTGGGCTTTGATATCGAGTGGGATATCGCGCTTAGTGGTGC
GCATGAAAATCCTCCGGCGACGTTCCAACTGGCAGCCGGTAAGTTCGTCT
TGGTTCTGCAAATCTTGCACGGCCAGAAGACGCCGTCGACGAAGCTTCCA
GGGTCCTTAGTCGGCCTTCTCGAGGACGCCAGCCTTACTTTCACAGGCGT
CGGCATCAATGGAGACTACACTAGAATCGAGAAGTTCTTTGGCGTTAAAG
TAGCACACGCGGTTGACTTGACCAAGCTAGCCTTGATTCGAAAGGTGCCG
CTAGGACTCAAGCGCAGCCTGGCCGACCTGTGCTCTCATCTGCTTGGTAG
AAGCCTCTCCAAGGACGGACGCGTAAGACTTTCAAGGTGGAACCGGAAGG
ATCTCTCGGAAGAACAGAAGACGTATGCCGCATTAGATGCGTACGTGTCC
ACCATCTTGCATTCCTGCATCGAGGAGAAGTCCGTTCCGATTTTCAAGGA
AGGCGAGGACTTGCAGGCTGGAGATCACGTTCGCCTTTACACGAGGACAG
GCAACGCGTGTGTTGGGGTGGGCGTGGTGCAAGAGTGTGAGGGACAGGTG
TGGGGTAGTACAGGAATCCTTCTCGTACCTGCGATGACCACTCGCGCTAA
ATAGGTATGCCGCATTAGATGCGTACGTGTCCACCATCTTGCATTCCTGC
ATCGAGGAGAAGTCCGTTCCGATTTTCAAGGAAGGCGAGGACTTGCAGGC
TGGAGATCACGTTCGCCTTTACACGAGGACAGGCAACGCGTGTGTTGGGG
TGGGCGTGGTGCAAGAGTGTGAGGGACAGGTGTGGGGTAGTACAGGAATC
CTTCTCGTACCTGCGATGACCACTCGCGCTAAATAG
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