mRNA_F-serratus_M_contig1207.1632.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1207.1632.1
Unique NamemRNA_F-serratus_M_contig1207.1632.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.730e-43
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MDATNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLHEI 240
            MDA   K FK+DA A G  GMFWR+KPEM ++TSSSDWPRNGT+LKGWY  EHPGWVKIDHP+GYW+PV QHGKAV+HE+
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVTEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 80          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.180e-34
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 MDATNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLHE 237
            MD    K+F +DAG+ G  GMFWRS+P M A+ S+SDWPRNG++L GWY  EHPGWV+IDHP GYW+PV Q G  VLHE
Sbjct:    1 MDPALRKEFVLDAGSKGCTGMFWRSEPRMGATASASDWPRNGSVLHGWYVQEHPGWVRIDHPNGYWMPVEQDGHTVLHE 79          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A7S0S545_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S545_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 5.030e-32
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    4 DATNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            DA+    F +DA  +G  GM+WRSKP+M+AS S+ DWPRNG  L+GW +  HPGWVK+DHPQGYWLP+ QHGK V+H
Sbjct:   43 DASTKINFTLDASQNGCTGMYWRSKPDMNASVSAPDWPRNGAKLQGWKSVAHPGWVKVDHPQGYWLPIEQHGKPVVH 119          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A8J4FZJ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZJ0_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 6.170e-32
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   13 NVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            N    +MDA  +G  GMFWRSKPEM+AS S+ DWPRNGT+ KGW + EHPGWVK+DHP+GYWLP+ Q+G  V H
Sbjct:   40 NKVNIRMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 113          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A835XUH0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUH0_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 1.530e-31
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 DATNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            +AT V   ++DA A+G  GMFWRSKPEM+AS  + DWPRNG   KGW + EHPGWVK+DHP+ YWLP+ QHGK V H
Sbjct:    9 EATKVT-IRLDASANGCTGMFWRSKPEMNASVQAPDWPRNGATFKGWKSVEHPGWVKVDHPKDYWLPIEQHGKPVCH 84          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A8J4G156_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G156_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 2.040e-31
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   28 KMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            +MDA  +G  GMFWRSKPEM+AS S+ DWPRNGT+ KGW + EHPGWVK+DHP+GYWLP+ Q+G  V H
Sbjct:   50 RMDASKNGCTGMFWRSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 118          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A835TBT2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBT2_CHLIN)

HSP 1 Score: 113 bits (283), Expect = 3.270e-31
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   10 TNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            T +K  ++DA A+G  GMFWRSKP+M+AS S+ DWPRNG + +GW + EHPGWVK+DH +GYW+P+ QHGK V H
Sbjct:   11 TKIK-IRLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFQGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 84          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A8J4I5_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J4I5_CHLRE)

HSP 1 Score: 112 bits (280), Expect = 1.880e-30
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:   10 TNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            T +K  ++DA A+G  GMFWRSKP+M+AS S+ DWPRNG +  GW + EHPGWVK+DH +GYW+P+ QHGK V H
Sbjct:   35 TKIK-IRLDASANGCSGMFWRSKPDMNASVSAPDWPRNGAVFLGWKSQEHPGWVKVDHEKGYWMPIEQHGKPVCH 108          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 112 bits (280), Expect = 1.880e-30
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   28 KMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            +MDA  +G  GMFWRSKP+M+AS ++ DWPRNGT+ KGW + EHPGWVK+DHPQ YWLP+ Q+G  V H
Sbjct:   42 RMDASKNGCTGMFWRSKPDMNASVNAPDWPRNGTVFKGWKSVEHPGWVKVDHPQNYWLPIQQYGNDVCH 110          
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Match: A0A2J8AGK5_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AGK5_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 4.900e-28
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   28 KMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYADEHPGWVKIDHPQGYWLPVMQHGKAVLH 234
            +MD+ A+G  GM+WR+KPEM+AS S+ DWPRNG   +GW + EHPGWVKIDH + YWLP+ Q+GK V H
Sbjct:   16 RMDSSANGCTGMYWRTKPEMNASVSAPDWPRNGAKFQGWKSVEHPGWVKIDHEKQYWLPIQQYGKDVCH 84          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1207.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FVU9_ECTSI1.730e-4373.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIY5_9STRA1.180e-3463.29Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A7S0S545_9CHLO5.030e-3261.04Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A8J4FZJ0_9CHLO6.170e-3263.51Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A835XUH0_9CHLO1.530e-3162.34Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4G156_9CHLO2.040e-3166.67Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A835TBT2_CHLIN3.270e-3160.00Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A8J4I5_CHLRE1.880e-3060.00Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A150GII6_GONPE1.880e-3063.77Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A2J8AGK5_9CHLO4.900e-2860.87Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1207contigF-serratus_M_contig1207:140688..141779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D7FVU9
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7IW@1,2SCDY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002230.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size246
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1207.1632.1prot_F-serratus_M_contig1207.1632.1Fucus serratus malepolypeptideF-serratus_M_contig1207 140688..141779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.383398-CDS-F-serratus_M_contig1207:140687..1407901622929123.383398-CDS-F-serratus_M_contig1207:140687..140790Fucus serratus maleCDSF-serratus_M_contig1207 140688..140790 -
1690962714.7633743-CDS-F-serratus_M_contig1207:140687..1407901690962714.7633743-CDS-F-serratus_M_contig1207:140687..140790Fucus serratus maleCDSF-serratus_M_contig1207 140688..140790 -
1622929123.3959818-CDS-F-serratus_M_contig1207:141265..1413371622929123.3959818-CDS-F-serratus_M_contig1207:141265..141337Fucus serratus maleCDSF-serratus_M_contig1207 141266..141337 -
1690962714.7736876-CDS-F-serratus_M_contig1207:141265..1413371690962714.7736876-CDS-F-serratus_M_contig1207:141265..141337Fucus serratus maleCDSF-serratus_M_contig1207 141266..141337 -
1622929123.4060988-CDS-F-serratus_M_contig1207:141708..1417791622929123.4060988-CDS-F-serratus_M_contig1207:141708..141779Fucus serratus maleCDSF-serratus_M_contig1207 141709..141779 -
1690962714.7821817-CDS-F-serratus_M_contig1207:141708..1417791690962714.7821817-CDS-F-serratus_M_contig1207:141708..141779Fucus serratus maleCDSF-serratus_M_contig1207 141709..141779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1207.1632.1

>prot_F-serratus_M_contig1207.1632.1 ID=prot_F-serratus_M_contig1207.1632.1|Name=mRNA_F-serratus_M_contig1207.1632.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MDATNVKQFKMDAGASGYPGMFWRSKPEMSASTSSSDWPRNGTLLKGWYA
DEHPGWVKIDHPQGYWLPVMQHGKAVLHEIK*
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mRNA from alignment at F-serratus_M_contig1207:140688..141779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1207.1632.1 ID=mRNA_F-serratus_M_contig1207.1632.1|Name=mRNA_F-serratus_M_contig1207.1632.1|organism=Fucus serratus male|type=mRNA|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig1207:140688..141779- (Fucus serratus male)
ATGGATGCAACCAACGTGAAGCAGTTCAAGATGGATGCTGGCGCCAGCGG GTACCCCGGCATGTTCTGGAGGTACGCCAACAATCGAAACGCGCACAGCT CTCCAGTAAGCAACAGTCGCGAAAGAAAAAAAACGCGTAGGAAATGATCG ACTTGTCTTCCGGCAATTGAGTGCGAGTGCACGACTTACCTGCCCGCCTC CGTCGTTCTAGACTCCGCCGCCGAGATAAAACATTTCACTTTACTGCTTC CCTTGCGTCGCCATTCGTACGTTCCACATTCGAAGCAACACGTTAGGCGT CAGGTATGTTACTTTCCTCCGAGCGGCACGCCCGTCCATGCGACCTCATG ATGTTCCTCGGTGTGGTCATCGGGATCAAGCTTGAACCTCCCTCGTATTT TGTAACTCTATAACTCGCGCCTTTTATGATGTGGCCGATCAGATCGAAGC CGGAGATGAGTGCAAGCACGTCCTCATCCGACTGGCCGCGCAACGGGACT CTACTCAAGGGTTGGTGAGGTTTGTGTTCCGCACAGGGAGGTTCCTGTTC ATTCGAATAGCCTCGATTCCCGCGGTGGTATGATCACACAGGATCAAGCG GGTAAGGCTGCCAATCCTGCTTGTGGTCAGCTGAATAGGGACAAATGTTT TCCCCCCTGTCTCCGCTCGCGCCTGAGAATTTGGTCTCGCGAGACATGTT CGGCTGTCCCGTCCCGCGCGTCGGTCCGTTCATCCTCCACACTCAGACTG AATCTGGTTTATGCCGAGCCTCTTTGCGGCGCTTTGTATCCAAACAATCA GTGGTCGGGGATTGGTCCATGGTTTCCATCGGTCTCTCGTAGATCAATCA TCTTAAGTTGATTATAAAGTATAATTATCCACAACGACCCCCTTCCCCCT GAATGTTTCCCCGGTACATCACCTCTCAGAAGACCGGTCATGTCCTTGTC CTGACCCAGCCGTGCTCGATTCGAATCCACCCGCAACAGGTACGCCGATG AACACCCGGGTTGGGTCAAGATCGATCACCCTCAGGGCTACTGGCTGCCG GTCATGCAGCACGGGAAGGCCGTCTTGCACGAGATCAAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1207:140688..141779-

>mRNA_F-serratus_M_contig1207.1632.1 ID=mRNA_F-serratus_M_contig1207.1632.1|Name=mRNA_F-serratus_M_contig1207.1632.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig1207:140688..141779- (Fucus serratus male)
ATGGATGCAACCAACGTGAAGCAGTTCAAGATGGATGCTGGCGCCAGCGG
GTACCCCGGCATGTTCTGGAGATGGATGCAACCAACGTGAAGCAGTTCAA
GATGGATGCTGGCGCCAGCGGGTACCCCGGCATGTTCTGGAGATCGAAGC
CGGAGATGAGTGCAAGCACGTCCTCATCCGACTGGCCGCGCAACGGGACT
CTACTCAAGGGTTGATCGAAGCCGGAGATGAGTGCAAGCACGTCCTCATC
CGACTGGCCGCGCAACGGGACTCTACTCAAGGGTTGGTACGCCGATGAAC
ACCCGGGTTGGGTCAAGATCGATCACCCTCAGGGCTACTGGCTGCCGGTC
ATGCAGCACGGGAAGGCCGTCTTGCACGAGATCAAGTAGGTACGCCGATG
AACACCCGGGTTGGGTCAAGATCGATCACCCTCAGGGCTACTGGCTGCCG
GTCATGCAGCACGGGAAGGCCGTCTTGCACGAGATCAAGTAG
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