mRNA_F-serratus_M_contig1134.1184.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1134.1184.1
Unique NamemRNA_F-serratus_M_contig1134.1184.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1134.1184.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.130e-27
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 SIEITNGVTFAIKGTGVDGGDCDELKFYSTVDMWYRIMGYGGNIDIESTLIRSWDTKDDEEHVLGVDDDGKTPRSYISCVSE 246
            S+ ITNGVTF IKGT + GGDCDELKF ST   W RIMG+GGNIDI+ST++RSWD     +H+L   DDG T RS+I+CVSE
Sbjct:  418 SVVITNGVTFEIKGTSI-GGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFIACVSE 498
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1134.1184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G257_ECTSI6.130e-2764.63Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1134contigF-serratus_M_contig1134:74484..75659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size248
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1134.1184.1prot_F-serratus_M_contig1134.1184.1Fucus serratus malepolypeptideF-serratus_M_contig1134 74484..75659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.3748763-CDS-F-serratus_M_contig1134:74483..745791622929034.3748763-CDS-F-serratus_M_contig1134:74483..74579Fucus serratus maleCDSF-serratus_M_contig1134 74484..74579 -
1690962675.5621448-CDS-F-serratus_M_contig1134:74483..745791690962675.5621448-CDS-F-serratus_M_contig1134:74483..74579Fucus serratus maleCDSF-serratus_M_contig1134 74484..74579 -
1622929034.4273822-CDS-F-serratus_M_contig1134:75122..752001622929034.4273822-CDS-F-serratus_M_contig1134:75122..75200Fucus serratus maleCDSF-serratus_M_contig1134 75123..75200 -
1690962675.5742266-CDS-F-serratus_M_contig1134:75122..752001690962675.5742266-CDS-F-serratus_M_contig1134:75122..75200Fucus serratus maleCDSF-serratus_M_contig1134 75123..75200 -
1622929034.4442506-CDS-F-serratus_M_contig1134:75587..756591622929034.4442506-CDS-F-serratus_M_contig1134:75587..75659Fucus serratus maleCDSF-serratus_M_contig1134 75588..75659 -
1690962675.5835986-CDS-F-serratus_M_contig1134:75587..756591690962675.5835986-CDS-F-serratus_M_contig1134:75587..75659Fucus serratus maleCDSF-serratus_M_contig1134 75588..75659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1134.1184.1

>prot_F-serratus_M_contig1134.1184.1 ID=prot_F-serratus_M_contig1134.1184.1|Name=mRNA_F-serratus_M_contig1134.1184.1|organism=Fucus serratus male|type=polypeptide|length=82bp
SIEITNGVTFAIKGTGVDGGDCDELKFYSTVDMWYRIMGYGGNIDIESTL
IRSWDTKDDEEHVLGVDDDGKTPRSYISCVSE
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mRNA from alignment at F-serratus_M_contig1134:74484..75659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1134.1184.1 ID=mRNA_F-serratus_M_contig1134.1184.1|Name=mRNA_F-serratus_M_contig1134.1184.1|organism=Fucus serratus male|type=mRNA|length=1176bp|location=Sequence derived from alignment at F-serratus_M_contig1134:74484..75659- (Fucus serratus male)
TCGATTGAGATCACCAACGGGGTGACGTTCGCTATCAAGGGCACTGGCGT
CGACGGTGGCGACTGCGACGAGGTACGATACGGCGCAGTGCCCTAGATCG
GCTTAAGACGAGCCCCTACAGTTGACACCATAGAGTGCTGTAGCTGAACT
TTGGCGGCTGGCGTCTTTTCCTTCGAGCGGAGGGATTTGGCAAAGAGATA
AGAGGCAATCTGTTGTTACTGTACCTTTGACCAGATCATGCATGTGTTTT
TTAGCAAACGTTGTCGTGTCTCTCGGCTGAAACGCGCGTTGCGACGGTGG
CGCAATGCTGAGGCATTCGGCCGAGTGCCTCGGATGAACTTGTGCGCCAT
AGCGGTGTGCCATCATTTTTCACGCTCCGGGTTTATAGTGAAGGTGACGA
AATTTTATCTTCCCTTTACTTCCTCGTGCAACCCCTCCCCCCTCCCGCCC
CTTCTGCAGCTTAAGTTTTACAGCACCGTCGACATGTGGTATAGGATCAT
GGGATACGGTGGAAACATCGACATCGAATCTACCCTGGTGAGTACGAAGC
ACGCCGTTTCGGTTGGAGGATTAGGGACCATTTTGTACGCGACTCTCTCC
CTCTCTCCCACCCGATAGGCCTGTCAGGGTTATCGCGACCAATCGATTCG
CTCAAGATAGAGCCGACTACGGTATTCACAAATTCTACTACGATCTAAAC
TTATAATCTGGAGGGTAAACTAATAATTTAGCGGGATTTATTTTTCCCCT
TTGGTCTTAAGACCTACTGGTATCGGTATCATACTGTCTGGAGGCAGAGC
GGGGAAGTTGGAAGGCGATTGCTCCGAGGCAAGGGGTCTGGGGTAAACAC
GCTGAGCATCTCACGGTGGTGGTACCGGACCAACGACAGAAGCAGAGCGA
TTTGTCCTTGCCTCCCACCCGGCTTTCTAGCCAAGAATCATGCGCTTGCT
CAAGAACGTTGCCGTCGAAGCGTGCGTCATTTTTTGTTGTCACGTCGAAA
CTTGTCGCGTTAGAATTCTACTCACTTCCACGATGCTCATGTCGTTTTCC
TCCCGTCTTCGATCGCGTTTTACTTGTCAGATAAGGAGCTGGGACACCAA
GGACGACGAGGAGCACGTGCTTGGTGTCGACGACGATGGGAAAACGCCTC
GATCCTACATCTCCTGCGTCAGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1134:74484..75659-

>mRNA_F-serratus_M_contig1134.1184.1 ID=mRNA_F-serratus_M_contig1134.1184.1|Name=mRNA_F-serratus_M_contig1134.1184.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig1134:74484..75659- (Fucus serratus male)
TCGATTGAGATCACCAACGGGGTGACGTTCGCTATCAAGGGCACTGGCGT
CGACGGTGGCGACTGCGACGAGTCGATTGAGATCACCAACGGGGTGACGT
TCGCTATCAAGGGCACTGGCGTCGACGGTGGCGACTGCGACGAGCTTAAG
TTTTACAGCACCGTCGACATGTGGTATAGGATCATGGGATACGGTGGAAA
CATCGACATCGAATCTACCCTGCTTAAGTTTTACAGCACCGTCGACATGT
GGTATAGGATCATGGGATACGGTGGAAACATCGACATCGAATCTACCCTG
ATAAGGAGCTGGGACACCAAGGACGACGAGGAGCACGTGCTTGGTGTCGA
CGACGATGGGAAAACGCCTCGATCCTACATCTCCTGCGTCAGCGAGATAA
GGAGCTGGGACACCAAGGACGACGAGGAGCACGTGCTTGGTGTCGACGAC
GATGGGAAAACGCCTCGATCCTACATCTCCTGCGTCAGCGAG
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