prot_F-serratus_M_contig1134.1184.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1134.1184.1
Unique Nameprot_F-serratus_M_contig1134.1184.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length82
Homology
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BLAST of mRNA_F-serratus_M_contig1134.1184.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.130e-27
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0 
Query:    1 SIEITNGVTFAIKGTGVDGGDCDELKFYSTVDMWYRIMGYGGNIDIESTLIRSWDTKDDEEHVLGVDDDGKTPRSYISCVSE 82
            S+ ITNGVTF IKGT + GGDCDELKF ST   W RIMG+GGNIDI+ST++RSWD     +H+L   DDG T RS+I+CVSE
Sbjct:  418 SVVITNGVTFEIKGTSI-GGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFIACVSE 498
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1134.1184.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G257_ECTSI6.130e-2764.63Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..82
e-value: 2.8E-8
score: 34.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1134contigF-serratus_M_contig1134:74484..75659 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1134.1184.1mRNA_F-serratus_M_contig1134.1184.1Fucus serratus malemRNAF-serratus_M_contig1134 74484..75659 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1134.1184.1 ID=prot_F-serratus_M_contig1134.1184.1|Name=mRNA_F-serratus_M_contig1134.1184.1|organism=Fucus serratus male|type=polypeptide|length=82bp
SIEITNGVTFAIKGTGVDGGDCDELKFYSTVDMWYRIMGYGGNIDIESTL
IRSWDTKDDEEHVLGVDDDGKTPRSYISCVSE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold