mRNA_F-serratus_M_contig1125.1138.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1125.1138.1
Unique NamemRNA_F-serratus_M_contig1125.1138.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 644 bits (1661), Expect = 4.920e-213
Identity = 364/714 (50.98%), Postives = 455/714 (63.73%), Query Frame = 3
Query:  123 YTELGCYEDSQKRIFSEGTKRLDD--LTRTSCAAICEDFPYFGLQYGNECWCGDYTSEIDSDTESDGCDMTCTGDSDANCGGNYAMRIFTRAMTDD---------------DAIGCY-GDSTDRVFS-DKLVD-RSGMSPEVCFDHCNSEGALYYGTQWGEECWCGYDEEDYDRLGSAT-CDRPCSGDSTLFCGGTYAMTVYGIDD----TDDSXXXXXXXXXXXXXXGTSMPVSSPTPVMTIPDECAGT--KTSIRWASGTGLNGRMYLEDGGCGTMTDLYQSR-VESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNTFEDADDDLCYKNFESSSFASTDTLP 2180
            Y+  GCY DS  R+ S  +    +  +T   CA  CE   YFG+Q+G EC+C       D   ES+ C+M C+GDS   CGG+YA++++  +                   +++GC+  DS+DRV S D ++   S M+   C D C  EG+ Y+GT++  EC+C    +  D LG A+ CD  CSGDS+  CGG  A+ VY ++D        XXXXXXXXXXXXXX           +M I   C     + S R+A+ +G+ GR+Y E  GC TMTDLY  R  E+DG + KGP+Y+LDDD   +  P+ +T  WLL +EL+I  G VFYC+GTS GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTPNK PQE YE+GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                             +GGA AAGIFLHRSSD   V+DN I +MQDAG+A+LESFDA I+ N     KYGIR+SLG GNN VY N F   S+YGLYTY+GSDEP+ S DGRP  N    N++ +   GVKIKE D+     NTF      EF ++T+T WS N   D  D    ++ E  + + +D++P
Sbjct:  177 YSFAGCYVDSPDRVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYSDXXXXXXXXXXXXXXXXXYESVGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFC--EGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVYMLEDGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMEISSSCGDDEDRPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGN---DIGDGCIEEDDEFDAASGSDSIP 883          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 533 bits (1372), Expect = 4.370e-175
Identity = 270/434 (62.21%), Postives = 319/434 (73.50%), Query Frame = 3
Query:  852 EDGGCGTMTDLYQSRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEP-EASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNTFEDADDDLCYKNFES 2150
            E  GC T+TDLY  R+ESDG + KGPI+ LDD    + +P  ++ KWLLT+EL I  G+VFYCRG+SIGGDCDELRIQSTG TDFHEVR HGGS+YFE T+VTSWDTPNK+PQ  Y  GRSFLNCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT                               +GG  AAGIFLHRSSD   V+DNV++DMQDAG+A+LES +ADI++N F++VK+GIR+SLG   N+V++N+F+  S  GLYTYQGSDEP +  SDGRP +N F +N I N   GVKIKE D+T+IT N FTGTS LEF DA +T W  NT       +C KN  S
Sbjct:   83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVY------------DGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQG---VCIKNIHS 500          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 504 bits (1298), Expect = 6.110e-165
Identity = 261/462 (56.49%), Postives = 318/462 (68.83%), Query Frame = 3
Query:  852 EDGGCGTMTDLYQSR-VESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNTFEDADDDLCYKNFES--------SSFASTDTLPS 2183
            E  GC T+TDLY  R  E+DG + KGP+Y+LD     + +PTSVT KWLL +EL++ +G++FYC G+  GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTPNK PQE YE GRSFLNCVSE  + ETC+G  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +A                             +GG  A GIFLHRSSD+ EVY N I++M DAG+A+LESF+ADIHDN    V++GIR+SLG G N+VYDN F+ CS++GLYTY GSDEP+ S+ GRP  N+F +N ++N+  GVK K +DN ++T N FTGT  LEF DA  T WS N+       +C  N  S        S+F+S+  +PS
Sbjct:   18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLPSG---VCIDNITSDDGNSVPPSTFSSSSGVPS 462          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 3.440e-157
Identity = 243/448 (54.24%), Postives = 305/448 (68.08%), Query Frame = 3
Query:  852 EDGGCGTMTDLYQSRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNTFEDADDDLCYKNFESSS-FASTDTLPSLC 2189
            + GGC T++DLY  +   +    KGP+++LD +D +  + T+ TGKWLLT++LF+  G+  YCRG  +GG+C ELRI+ST  +DF E+RGHGG+LYFE T+VTSWD   + PQE Y+DGRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                             +GGA AAGIFLHRS D  EVY N I +M DAG+A+LE+   DIHDN     ++GIR+ LG  NN V+DNVF      G++TY GSDEP     GRP +N FY+N I  TETGVKIKE+DN  IT N F+GT+ +EFN+A D  WS N+      + C ++ +++S F  +  LP  C
Sbjct:    7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPT---NTCLEDIDNNSTFTGSSGLPLEC 447          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 478 bits (1231), Expect = 1.330e-152
Identity = 266/592 (44.93%), Postives = 354/592 (59.80%), Query Frame = 3
Query:  375 RIFTRAMTDDDAIGCYGDSTD-RVFSDKLVDRSGMSPEVCFDHCNSEGALYYGTQWGEECWCGYDEEDYDRL---GSATCDRPCSGDSTLFCGGTYAMTVYGIDDTDDSXXXXXXXXXXXXXXGTSMPVSSPTPVMTIPDECAGTKTSIRWASGTGLNGRMYLEDGGCGTMTDLYQSRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESDET--CEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKS------NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEA-SSDGRPGENSFYDNIISNT--ETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNT 2105
            R      +D +++GC+ D++D RV   +L D++ M+P++C  +C   G  YY  QW  ECWC  +    D L   G  TCD  C GDS   CGG +A TVY +                    GT    ++PTP  T   + A T   +R+          Y E GGCGT+T +Y+++ E DG     P+Y+LD++++++    + TG WLL   L +  GS     GT+  GD D LR+ ST S DF EVRG+GG+L+F+ T VTSWDT N   +E   DGRSF+NCV++++      C+G+   ++GECRMDII S MG +GWFD+ESYGLTWKVRG C          N E+F+  NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+                             +GG  A GIFLHRSSD  EV+DNV+Y+MQDAG+A++ES+DA+I+DN+FTN +YGIR+SLG G N + +N+F   ++YGLYTY GSD+P+  +S+GRP +N F  N I       GV IKE D+ +   N FTG S  EF D++DT W DNT
Sbjct:   62 RTLITGQSDPNSLGCFADTSDGRVMEAQLTDQA-MTPDMCNAYCEDLGYYYYAVQWSIECWCAPETTTADELAVHGLGTCDFACGGDSDQICGGFWAFTVYEV--------------------GTES--TTPTPSATTSCDSAAT---VRFTDDIA-----YFEGGGCGTLTQMYEAQ-EGDG-----PLYVLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 440 bits (1132), Expect = 5.580e-142
Identity = 219/348 (62.93%), Postives = 249/348 (71.55%), Query Frame = 3
Query:  873 MTDLYQSR-VESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSE 1889
            MTDLY  R  E DG + KGP+Y+LDDD   +  P+ +T  WLL +EL+I  G VFYC+GTS GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTPNK PQE YE GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNPEVFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT                               +GGA A GIFLHRSSD   V+DN I +MQDAG+A+LE+FDA I+ NT    KYGIR+SLG GNN VY N F   S+
Sbjct:    1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVR------------DGGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 8.380e-133
Identity = 237/424 (55.90%), Postives = 276/424 (65.09%), Query Frame = 3
Query:  936 ILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNTFEDADDDLCYKNFES--------SSFASTDTLPS 2183
            +LDD    + SPTSVT KWLL SEL++  G++FYC G+  GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTPNK PQE YE GRSFLNCVSE  + ETC+G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX                +GG +A GIFLHRSSD+ EVY                                                        G       D P+ S+ GRP  N+F +N I+NT  GVKIK +DN +I+ N FTGT  LEF DA  T WSDN+       +C  N  S        S+F+S+  +PS
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVSN-GRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDNSLPSG---VCIDNVTSDDGNSVPPSTFSSSSGVPS 365          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 7.930e-128
Identity = 225/459 (49.02%), Postives = 292/459 (63.62%), Query Frame = 3
Query:  837 GRMYLEDGGCGTMTDLYQSRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEYESD--ETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSD--GRPGENSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLE---FNDATDTAWSDNTFEDADDDLCYKNFESSSFA-STDTLPSLC 2189
            G+ Y+  GGC T+TD+Y ++    G    GP+++LD +D ++    S TG WLL  ++ +  GS+    G   GGD   LRIQSTGS D++E+RGHGGSL F  T VTSWDT  K    +Y+  RSF+ CVSE  +D  +TC+G   N  GECRMDII SEMG +G+  +ESYG++WKVRG+C++  NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                             +GG  A GIFLHRSSD CEV+ N +YDM+DAG+AI+ES  A IHDNTFTNVKYGIR+S+G   N V +N F +C +YG+YTYQG+D+PEAS D  G   +N+F+ N +   E GVKI++A+  + T N F   S  E   F D  D  W++N   D   D+C K  ++  +  S D+LP LC
Sbjct:  398 GKNYIRGGGCATLTDIYTAQG---GHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPD---DICLKGDKNIDYMKSYDSLPDLC 845          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.220e-118
Identity = 220/464 (47.41%), Postives = 273/464 (58.84%), Query Frame = 3
Query:  804 SIRWASGTGLNGRMYLED-------GGCGTMTDLYQSRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTF-TGTS---LLEFNDATDTAWSDNTFED-------ADDDLCY 2135
            SIR+A   G   R+YLE        GGC T+  +++SR        KGP+Y +D D   +   TS TG WLLT EL++  G      G+  GGD DELR+ ST  T F  +R HGGSL F  T V SWDT   SP ED  DGRS+++ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   +AGIFLHRSSD   V  N ++D  DAGLA+LESF+AD+ +NTF N KYG+R S+G  +N   +N     +EY  Y+Y G+DEP+  S GR   N F  N  S  E  +KIKEAD T    N F  G +   ++ F++AT+     NT  D        D+D C+
Sbjct:   45 SIRYA---GTTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACF 496          
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 3.950e-117
Identity = 222/470 (47.23%), Postives = 279/470 (59.36%), Query Frame = 3
Query:  750 SSPTPVMTIPDECAGTKTSIRWASGTGLNGRMYLED------GGCGTMTDLYQSRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYEDGRSFLNCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGENSFYDNIISNTETGVKIKEADNTIITGNTF-TGTS---LLEFNDATDTAWSDNTFEDADD 2123
            +SP   ++ PD  +  + SIR+A   G   R+YLE       GGC T+  +++SR        K P+Y +D D   + S T  TG WLLT EL++  G      GT  GGD DELR+ ST  T +  +R HGGSL F  T V SWDT   SP ED  DGRS+++ VSE   + DETCEG  KN  GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD  NVYG++ +SDIHH+ +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   +AGIFLHRSSD   V  N ++D  DAGLA+LESF+AD+ +NTF N KYG+R+S+G  +N   +N+    S+Y  YTY GSDEP+  S GR   N F  N  S  E  +KIKEAD T    N F  G +   ++ F+DA ++    NT  D  D
Sbjct:   32 ASPNDPISKPDCDSDIEVSIRYA---GTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSGDV-SETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGD 489          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1125.1138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC73_ECTSI4.920e-21350.98Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LRM4_ECTSI4.370e-17562.21Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE6.110e-16556.49MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRR8_ECTSI3.440e-15754.24Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI1.330e-15244.93Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5KWQ2_9PHAE5.580e-14262.93MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI8.380e-13355.90Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE7.930e-12849.02MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G339_ECTSI1.220e-11847.41Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI3.950e-11747.23Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1125contigF-serratus_M_contig1125:286451..292373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score652.5
Seed ortholog evalue2.3e-184
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons11
Model size3337
Cds size2187
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.8113017-UTR-F-serratus_M_contig1125:286450..2875951622929021.8113017-UTR-F-serratus_M_contig1125:286450..287595Fucus serratus maleUTRF-serratus_M_contig1125 286451..287595 -
1690962670.0386791-UTR-F-serratus_M_contig1125:286450..2875951690962670.0386791-UTR-F-serratus_M_contig1125:286450..287595Fucus serratus maleUTRF-serratus_M_contig1125 286451..287595 -
1622929021.9973094-UTR-F-serratus_M_contig1125:292368..2923731622929021.9973094-UTR-F-serratus_M_contig1125:292368..292373Fucus serratus maleUTRF-serratus_M_contig1125 292369..292373 -
1690962670.1475217-UTR-F-serratus_M_contig1125:292368..2923731690962670.1475217-UTR-F-serratus_M_contig1125:292368..292373Fucus serratus maleUTRF-serratus_M_contig1125 292369..292373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.8290472-CDS-F-serratus_M_contig1125:287595..2877531622929021.8290472-CDS-F-serratus_M_contig1125:287595..287753Fucus serratus maleCDSF-serratus_M_contig1125 287596..287753 -
1690962670.0529435-CDS-F-serratus_M_contig1125:287595..2877531690962670.0529435-CDS-F-serratus_M_contig1125:287595..287753Fucus serratus maleCDSF-serratus_M_contig1125 287596..287753 -
1622929021.8446684-CDS-F-serratus_M_contig1125:288149..2882931622929021.8446684-CDS-F-serratus_M_contig1125:288149..288293Fucus serratus maleCDSF-serratus_M_contig1125 288150..288293 -
1690962670.0610764-CDS-F-serratus_M_contig1125:288149..2882931690962670.0610764-CDS-F-serratus_M_contig1125:288149..288293Fucus serratus maleCDSF-serratus_M_contig1125 288150..288293 -
1622929021.8574545-CDS-F-serratus_M_contig1125:288473..2886381622929021.8574545-CDS-F-serratus_M_contig1125:288473..288638Fucus serratus maleCDSF-serratus_M_contig1125 288474..288638 -
1690962670.0701208-CDS-F-serratus_M_contig1125:288473..2886381690962670.0701208-CDS-F-serratus_M_contig1125:288473..288638Fucus serratus maleCDSF-serratus_M_contig1125 288474..288638 -
1622929021.8725872-CDS-F-serratus_M_contig1125:288831..2890691622929021.8725872-CDS-F-serratus_M_contig1125:288831..289069Fucus serratus maleCDSF-serratus_M_contig1125 288832..289069 -
1690962670.0796497-CDS-F-serratus_M_contig1125:288831..2890691690962670.0796497-CDS-F-serratus_M_contig1125:288831..289069Fucus serratus maleCDSF-serratus_M_contig1125 288832..289069 -
1622929021.8962789-CDS-F-serratus_M_contig1125:289276..2899171622929021.8962789-CDS-F-serratus_M_contig1125:289276..289917Fucus serratus maleCDSF-serratus_M_contig1125 289277..289917 -
1690962670.0876935-CDS-F-serratus_M_contig1125:289276..2899171690962670.0876935-CDS-F-serratus_M_contig1125:289276..289917Fucus serratus maleCDSF-serratus_M_contig1125 289277..289917 -
1622929021.9116242-CDS-F-serratus_M_contig1125:290173..2903441622929021.9116242-CDS-F-serratus_M_contig1125:290173..290344Fucus serratus maleCDSF-serratus_M_contig1125 290174..290344 -
1690962670.0957363-CDS-F-serratus_M_contig1125:290173..2903441690962670.0957363-CDS-F-serratus_M_contig1125:290173..290344Fucus serratus maleCDSF-serratus_M_contig1125 290174..290344 -
1622929021.923213-CDS-F-serratus_M_contig1125:290646..2908361622929021.923213-CDS-F-serratus_M_contig1125:290646..290836Fucus serratus maleCDSF-serratus_M_contig1125 290647..290836 -
1690962670.103825-CDS-F-serratus_M_contig1125:290646..2908361690962670.103825-CDS-F-serratus_M_contig1125:290646..290836Fucus serratus maleCDSF-serratus_M_contig1125 290647..290836 -
1622929021.9418254-CDS-F-serratus_M_contig1125:290990..2910851622929021.9418254-CDS-F-serratus_M_contig1125:290990..291085Fucus serratus maleCDSF-serratus_M_contig1125 290991..291085 -
1690962670.1119285-CDS-F-serratus_M_contig1125:290990..2910851690962670.1119285-CDS-F-serratus_M_contig1125:290990..291085Fucus serratus maleCDSF-serratus_M_contig1125 290991..291085 -
1622929021.9610662-CDS-F-serratus_M_contig1125:291403..2915871622929021.9610662-CDS-F-serratus_M_contig1125:291403..291587Fucus serratus maleCDSF-serratus_M_contig1125 291404..291587 -
1690962670.1216195-CDS-F-serratus_M_contig1125:291403..2915871690962670.1216195-CDS-F-serratus_M_contig1125:291403..291587Fucus serratus maleCDSF-serratus_M_contig1125 291404..291587 -
1622929021.9719512-CDS-F-serratus_M_contig1125:291955..2920691622929021.9719512-CDS-F-serratus_M_contig1125:291955..292069Fucus serratus maleCDSF-serratus_M_contig1125 291956..292069 -
1690962670.1296895-CDS-F-serratus_M_contig1125:291955..2920691690962670.1296895-CDS-F-serratus_M_contig1125:291955..292069Fucus serratus maleCDSF-serratus_M_contig1125 291956..292069 -
1622929021.9844198-CDS-F-serratus_M_contig1125:292281..2923681622929021.9844198-CDS-F-serratus_M_contig1125:292281..292368Fucus serratus maleCDSF-serratus_M_contig1125 292282..292368 -
1690962670.1377335-CDS-F-serratus_M_contig1125:292281..2923681690962670.1377335-CDS-F-serratus_M_contig1125:292281..292368Fucus serratus maleCDSF-serratus_M_contig1125 292282..292368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1125.1138.1prot_F-serratus_M_contig1125.1138.1Fucus serratus malepolypeptideF-serratus_M_contig1125 287596..292368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1125.1138.1

>prot_F-serratus_M_contig1125.1138.1 ID=prot_F-serratus_M_contig1125.1138.1|Name=mRNA_F-serratus_M_contig1125.1138.1|organism=Fucus serratus male|type=polypeptide|length=729bp
MARSAAFAMALTLPAALGFLSDNLAAATNVVSQTFADAEYTELGCYEDSQ
KRIFSEGTKRLDDLTRTSCAAICEDFPYFGLQYGNECWCGDYTSEIDSDT
ESDGCDMTCTGDSDANCGGNYAMRIFTRAMTDDDAIGCYGDSTDRVFSDK
LVDRSGMSPEVCFDHCNSEGALYYGTQWGEECWCGYDEEDYDRLGSATCD
RPCSGDSTLFCGGTYAMTVYGIDDTDDSTEEAPSPVPSPVPSGTSMPVSS
PTPVMTIPDECAGTKTSIRWASGTGLNGRMYLEDGGCGTMTDLYQSRVES
DGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSELFIRSGSVFYCRGTSI
GGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQEDYED
GRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGL
TWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTN
NKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIASKRCNNVKIYGNE
VYNGGAQAAGIFLHRSSDSCEVYDNVIYDMQDAGLAILESFDADIHDNTF
TNVKYGIRISLGGGNNNVYDNVFDQCSEYGLYTYQGSDEPEASSDGRPGE
NSFYDNIISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATDTAWSDNT
FEDADDDLCYKNFESSSFASTDTLPSLC*
back to top

mRNA from alignment at F-serratus_M_contig1125:286451..292373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1125.1138.1 ID=mRNA_F-serratus_M_contig1125.1138.1|Name=mRNA_F-serratus_M_contig1125.1138.1|organism=Fucus serratus male|type=mRNA|length=5923bp|location=Sequence derived from alignment at F-serratus_M_contig1125:286451..292373- (Fucus serratus male)
CAGGTATGGCTCGTTCAGCTGCCTTTGCGATGGCCTTAACGTTGCCGGCA GCTCTTGGTTTCTTGAGCGACAACCTTGCAGCTGCCACCAATGTAAGTCA TTGGTAAAACGACCCTACTACCGTAAGAATACTTTATGTTTTCTTCAACG CTAATATTGAATGGTTCTTCGCTCGAAATTCGGTTGTATGCGAACCTCGA TACCGACCTTTCATTATCGACTTTGCGAAATTCATGCCCTCCGCCTTCTG TTTGTATGTGAGTAAACCTAAATGTCCTGTTTCCGCGTGAATGAAAATTG GCAGGTCGTATCCCAGACCTTCGCCGACGCCGAGTATACCGAACTCGGAT GCTATGAAGACAGCCAGAAACGCATTTTCAGCGAGGGCACCAAGCGTCTC GACGATCTGACTAGAACAGTGAGACCTTGCTTCACCGTTATACACTTATA ATAGTTTTGACGATGAATTACGAACCGTAGGAACGATACTACATATTTAA TGCTAACGCTTTGGTTTTCTAAGTTACGGGCTTGATTTATTTACTGTACT GTATCTTGATATCCATGCTTACATCTACCACGACCAGTTTTATCATCCAA CTCAGTATTTCCTCTTTCCGTCATTGATAACATGCTGTGGTCTCTGCAAT AGTCTGTGGTGTGGCTTTATGTAATAATCTCTGGGAAAGTAAATTCCGGA ACGGTTGGGATCTCCGCGTTGGCATCCCATCCATATCTTGATGCCTGACG GGCGTGCCTTTCCACCTGGTACATGCTTTTACCCAGAGCTGCGCCGCCAT CTGCGAGGACTTCCCCTACTTCGGTTTGCAGTACGGTAATGAGTGCTGGT GCGGAGACTACACTAGCGAGATCGACAGTGACACTGAGTCCGACGGGTGC GACATGACATGTACAGGGGACTCCGACGCTAACTGCGGCGGCAACTACGC TATGAGGATCTTTACTCGTGGTGAGTGGGCATAACCTTTTTGGCATGCAT GTGGCAGCTACTTTCCTTAACCTTTCATTCTTAGGGCAGAGAGCGGAGGT GAAAGTTTAGTCTGGACGGTGTTCACTGGAGGATTAGTTAGGAGGGCATA ATAAGCAAGTAAAACAGTATCAGTCGCAGGACTCACGTTATGATCCCAGG GATTTTTTGGAACTTACAAGTATGGCGTTATCAGCGACAGAGGCTAAACC GAGTAGAATTGACTTGTTTTCTAGCTTGGCCTCTCTCCGCGTGGCTGAAA CTGCTTTGCCCAATGATTTCTGTTGTGTACATCGACAGCTATGACCGACG ATGATGCAATCGGCTGCTACGGGGACTCCACCGACCGTGTCTTCAGTGAT AAGCTCGTCGATCGGTCAGGGATGAGTCCCGAGGTAAGGACGCATCTTGT TTTTTGTGTCCGAATTGCTGAAATAATAGCGAGTCTCATGTCGACTACTA TTATAATGGTTAATCCTATCATTAACAACAAGACGGATAATACCATTTTG TCCATCTTGTGACCTTCGGTTATTTTGCCTATTGCAGGTTTGCTTTGACC ATTGCAACAGCGAAGGCGCCTTATACTACGGAACTCAGTGGGGTGAGGAA TGTTGGTGCGGATACGACGAGGAAGATTACGACCGACTTGGATCGGCCAC GTGCGATCGCCCGTGCTCTGGTGATTCCACGCTGTTCTGCGGCGGTACCT ACGCCATGACCGTGTACGGGATCGATGGTGAGATGCATACTGAACACGCT GTAATAGACAGTGAGATATACAATTCTTGGGGGCCTTTGGTAACTGTAAA ATATGAAATATTTTTGTAAAGCAAAGGGGCGGGGAGTAGAAATATTATGG TATGGACCTACACAATCAAGAGCGTTTTAGATTGCACCCCCGCTAAAGAA CGCTTACCCACAGGATTTGATGCATTATAACGAAACCGTAATCTGCGTTC ATGGACATGGCAGGAAATGCTTATCCCCTCGCCGAACGACCCATCCCGCC GGTGGCCTTTCTCCGAATGCTCGTTACAGACACAGACGACAGTACCGAAG AGGCCCCTTCCCCAGTACCCAGCCCCGTGCCTAGCGGCACCTCAATGCCC GTTTCCTCACCTACTCCGGTGATGACCATCCCTGATGAATGCGCCGGAAC CAAGACTAGCATCCGATGGGCGTCCGGCACGGGACTTAACGGTCGCATGT GTGAGTACTTTGGCAGCTTCTCGGGCTGAGTCTATCGAGGCCTCCGCCGA TTTGGCTAACTTTACACGGTCATGTTGATGTTTATATTTTTAAAGTGAAG GCTTGTCTCATCCAGCACCCACGCAAGACTTTTGTGGTTTAAACGAAGTC GTAGATAAGTAAGGATGGTAACTCGTGGGCGAAATGAACCCAGAGCATCT TTTACGCATGGTTGATTGCAATATTGTTCTATATTGATTGCGCGTCGCTA TTCCAGACCTCGAGGACGGTGGCTGTGGCACCATGACTGACCTCTACCAA AGTCGCGTGGAGAGCGACGGGTGGACCCCGAAAGGTCCCATCTACATCCT CGACGACGATGATGAAATCATGTACAGCCCCACTAGCGTGACCGGCAAGT GGCTCCTCACCTCCGAGCTGTTCATCCGCAGCGGGTCCGTCTTCTACTGC CGCGGCACCAGCATAGGTGGTGACTGCGACGAGCTACGAATCCAGTCTAC CGGTTCCACGGATTTCCACGAGGTACGTGGCCATGGAGGCAGCCTGTACT TCGAGAAGACCCTCGTCACCTCTTGGGACACCCCAAACAAGAGCCCGCAA GAAGATTACGAAGACGGCCGTTCGTTCCTTAACTGCGTATCTGAGTACGA GTCGGACGAGACGTGTGAGGGCCAGCCTAAAAACGACTACGGGGAGTGCC GCATGGATATTATCGATTCCGAGATGGGCTACCTGGGATGGTTCGACTCG GAGTCCTACGGTCTAACCTGGAAGGTCCGCGGGTTTTGCGCCGACAAGAG CAACCCGGAGGTGTTCGACACAACGAACGTATACGGGGACATCAAGAACT CCGACATTCATCACATGTACTACGGGATGTACTCTTACGGCCACCAGGTA ACTTTGGACGATCGCTACGGTCAATGCGGGAGGCTTTTGCTACGCCTTTA TTTACAATATCGCGGTCCTTCTGTCCACCGCACGTATTTTATTTAATGGC AGTACTTGTAGTTCGTAGCCAGTCGCTCGTGCATAGACAATGGAAATAAT TTGTACATTTAACGCTGCAATTACGCGTTTTCTGTCGCTTTCCTCACGTG ACAGGGTGGTGTGTGGACGAACAACAAGATGCACGACAACCACCAGTACG GTTTCGACCCCCACGATGACTCGGACTACCTCACCATCGCCAACAACGAG GTCTACGACAACGTGAATCACGGCATCATCGCCTCCAAGCGCTGCAACAA TGTTAAGATTTACGGAAATGAGGTTTACAACGGCGGTGCGCAAGCTGCGG GCATCTTTCTCCACCGTAGCTCCGACAGCTGTGAGGTTTACGGTGAGTCG GTGCAGACATTTGCCGCGTCCGATTGATGAAACGTGTATGCATGTGTGCC ATACATGCAAGGACTACTTTGGCGTTGAGCGAGGGCATCTGATCAATATG AGTTTTCCTTGTTCTGCTGCTCACATCTTCGGTTATATTCCTTTTTTGTG CGGATTTGCCAACAATTCCTGCTGTGCCGGCGAAGATAATGTCATTTATG ACATGCAGGACGCCGGTCTGGCCATTCTGGAGTCTTTCGACGCCGACATC CATGACAACACATTTACTAACGTCAAGTACGGCATCCGTATCAGCCTGGG CGGAGGCAACAACAACGTCTACGACAACGTGTTCGACCAATGCTCCGAGT GTGAGTCCCGCCGTCCATAGTTTGCAGTAAACGGGCCGTAGTGACTCTTT ACTCTCGATCCTCTTGCAAAAGCCTCTCCTCACCTCCACTTCGTACCCCC TGTGGTATGTAACTAACTGCCCATCTCTGCATTCCTATTGCACTCTATTT GAATTTCTCGACGTACGGCGCGTTTTGCAGATGGTCTGTACACCTACCAG GGTTCTGATGAACCCGAGGCTTCTTCCGACGGCCGACCTGGCGAGAACAG CTTTTACGACAACATAATCTCCAACACAGAGACGGGTGTCAAGATTAAAG AAGCAGACAACACCATTATCACCGGTGAGACTGATAGCCAGGCTATCCCG CGTTCTTGTCACCATTATTCTCTTGCTGATAAACAGTCTCCTGCGCCGAA TTCACCTTGGAAATACGCACACGTCGCCACTGCCTGCAAGCCTGTCTGCA CAGAGATAGAGCTCGGTTTTGTATTTTGTGTGTATAGCGTACATCGCAAA CGGGGGAACTGAGTTTCTATTTCGTGCTACTGTTTGATTGCAGTATCTAG CTAACAACACGTATTCATTTCTGCTGCAGCAACTTGCGTATTAAGCGCCG TGGTACCAATGTGAGGAGAACACATCCGCATGTTAAGAAAGGGTATCCCC CATTTATTCCAATGTCGCTGGATTTGGACATCGGGGTTGATTCCGCTTGT GCCTCGTTTTGCGTGTTCAGGCAACACCTTCACGGGGACTTCTCTTCTCG AATTCAACGACGCTACGGATACTGCGTGGTCGGACAACACTTTCGAGGAT GCTGACGATGACCTCTGCTACAAGAACTTCGAGAGTAGCTCGTTCGCGTC CACCGATACTCTACCTTCGCTGTGCTAAGAAAAGGTCCAAGCGTGTAGTT TGAAATGTGAGAAGGTCTCTACTCGCCCGTTAATAGTGATTTGGATTCCT CCTGGGAAGCTTTAGTACGGCTTGGAAAAATATTGATGGGGTGCGACAAG ACAGGATATAGATAATAACTTCCATGCCAAGGACGTCGACTTTGGGTTAT ATGAGGGAGAATCCGACCCTTGGGCCGGGAGGTGTTGGTAGGGTGTTACG TTTGTTTCGACGCGTGCCTTGGCGACAACGTTACTCTTGGGCATAACGCC GTACACATCGTTGTCACAATGGCACGGAAGGTACAGAGTAAGCCTAAGTA GATGTGCCGCTGCCGCCAAGTATTGGTTAGCATCACCCTCTCCCTCCGAG ATTAATTATTGTCCTCTGTAGTCTTGCATGTGTCGATTTCTAGAGTTACC ATTAACAAGCCACACGTGTGCGCTAGTTTGGCGGAATATTCCCTTAACAA GGGATATACTTGATTATTATGTGTTGGGCGACGTTTCATGAAGCTCGGTC GGTAAAACGAAGAAACCTAGTGTGCCAAGGGGTTTCTGTATGAGATTAGT TGTTGGGAGGGGATTGTTGCTACCCTTACTAAGTGTAGAAAATCTTTTCA TTTCATGCCCCGGCCGATGCCTCTGCGGGCTGATCTTTGATGTATTTGTA GCCACTACAGTCATGCTTCTTGTAAGACGCTTGAAAGCGTGTGACTGGTA CTACGCGTGGGAATCGTACGTCTAGACCTAGATTCCCATCGAAGCATGTC TGATCACTCTCCCCATTTCGATTTCGCGTGATAATAACGTCTCATTTTGT ATTGTAATGCATCAAATTCTAAGCGATCCTCTGTAACTTTGTCTGTAGCC GGAAGTTAACCGCATCGGGTTTTGGCTTTTGTAGCTTGGTCACGTAGTTG TACCAGTAGGTAGAGTTTGTTTGTTGTCGTTGGAACATGAAGTACTTGTT GCCGTGGTTCAGGGCGGTTTTCTGGCGTTGTACCTTAAATTCTTCGCTTT AAGCCTTGAGAGTTAGTAGTCGTGGAACGATTGTGTGCGCACAAACAGCG ACACAACAGTGCGAAAGCTTACCTTTCGGACACGGCCTGTTTTGTTGGGT CAGAGTTTGTCATGTGTAACATT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1125:286451..292373-

>mRNA_F-serratus_M_contig1125.1138.1 ID=mRNA_F-serratus_M_contig1125.1138.1|Name=mRNA_F-serratus_M_contig1125.1138.1|organism=Fucus serratus male|type=CDS|length=4374bp|location=Sequence derived from alignment at F-serratus_M_contig1125:286451..292373- (Fucus serratus male)
ATGGCTCGTTCAGCTGCCTTTGCGATGGCCTTAACGTTGCCGGCAGCTCT
TGGTTTCTTGAGCGACAACCTTGCAGCTGCCACCAATATGGCTCGTTCAG
CTGCCTTTGCGATGGCCTTAACGTTGCCGGCAGCTCTTGGTTTCTTGAGC
GACAACCTTGCAGCTGCCACCAATGTCGTATCCCAGACCTTCGCCGACGC
CGAGTATACCGAACTCGGATGCTATGAAGACAGCCAGAAACGCATTTTCA
GCGAGGGCACCAAGCGTCTCGACGATCTGACTAGAACAGTCGTATCCCAG
ACCTTCGCCGACGCCGAGTATACCGAACTCGGATGCTATGAAGACAGCCA
GAAACGCATTTTCAGCGAGGGCACCAAGCGTCTCGACGATCTGACTAGAA
CAAGCTGCGCCGCCATCTGCGAGGACTTCCCCTACTTCGGTTTGCAGTAC
GGTAATGAGTGCTGGTGCGGAGACTACACTAGCGAGATCGACAGTGACAC
TGAGTCCGACGGGTGCGACATGACATGTACAGGGGACTCCGACGCTAACT
GCGGCGGCAACTACGCTATGAGGATCTTTACTCGTGAGCTGCGCCGCCAT
CTGCGAGGACTTCCCCTACTTCGGTTTGCAGTACGGTAATGAGTGCTGGT
GCGGAGACTACACTAGCGAGATCGACAGTGACACTGAGTCCGACGGGTGC
GACATGACATGTACAGGGGACTCCGACGCTAACTGCGGCGGCAACTACGC
TATGAGGATCTTTACTCGTGCTATGACCGACGATGATGCAATCGGCTGCT
ACGGGGACTCCACCGACCGTGTCTTCAGTGATAAGCTCGTCGATCGGTCA
GGGATGAGTCCCGAGCTATGACCGACGATGATGCAATCGGCTGCTACGGG
GACTCCACCGACCGTGTCTTCAGTGATAAGCTCGTCGATCGGTCAGGGAT
GAGTCCCGAGGTTTGCTTTGACCATTGCAACAGCGAAGGCGCCTTATACT
ACGGAACTCAGTGGGGTGAGGAATGTTGGTGCGGATACGACGAGGAAGAT
TACGACCGACTTGGATCGGCCACGTGCGATCGCCCGTGCTCTGGTGATTC
CACGCTGTTCTGCGGCGGTACCTACGCCATGACCGTGTACGGGATCGATG
GTTTGCTTTGACCATTGCAACAGCGAAGGCGCCTTATACTACGGAACTCA
GTGGGGTGAGGAATGTTGGTGCGGATACGACGAGGAAGATTACGACCGAC
TTGGATCGGCCACGTGCGATCGCCCGTGCTCTGGTGATTCCACGCTGTTC
TGCGGCGGTACCTACGCCATGACCGTGTACGGGATCGATGACACAGACGA
CAGTACCGAAGAGGCCCCTTCCCCAGTACCCAGCCCCGTGCCTAGCGGCA
CCTCAATGCCCGTTTCCTCACCTACTCCGGTGATGACCATCCCTGATGAA
TGCGCCGGAACCAAGACTAGCATCCGATGGGCGTCCGGCACGGGACTTAA
CGGTCGCATGTACACAGACGACAGTACCGAAGAGGCCCCTTCCCCAGTAC
CCAGCCCCGTGCCTAGCGGCACCTCAATGCCCGTTTCCTCACCTACTCCG
GTGATGACCATCCCTGATGAATGCGCCGGAACCAAGACTAGCATCCGATG
GGCGTCCGGCACGGGACTTAACGGTCGCATGTACCTCGAGGACGGTGGCT
GTGGCACCATGACTGACCTCTACCAAAGTCGCGTGGAGAGCGACGGGTGG
ACCCCGAAAGGTCCCATCTACATCCTCGACGACGATGATGAAATCATGTA
CAGCCCCACTAGCGTGACCGGCAAGTGGCTCCTCACCTCCGAGCTGTTCA
TCCGCAGCGGGTCCGTCTTCTACTGCCGCGGCACCAGCATAGGTGGTGAC
TGCGACGAGCTACGAATCCAGTCTACCGGTTCCACGGATTTCCACGAGGT
ACGTGGCCATGGAGGCAGCCTGTACTTCGAGAAGACCCTCGTCACCTCTT
GGGACACCCCAAACAAGAGCCCGCAAGAAGATTACGAAGACGGCCGTTCG
TTCCTTAACTGCGTATCTGAGTACGAGTCGGACGAGACGTGTGAGGGCCA
GCCTAAAAACGACTACGGGGAGTGCCGCATGGATATTATCGATTCCGAGA
TGGGCTACCTGGGATGGTTCGACTCGGAGTCCTACGGTCTAACCTGGAAG
GTCCGCGGGTTTTGCGCCGACAAGAGCAACCCGGAGGTGTTCGACACAAC
GAACGTATACGGGGACATCAAGAACTCCGACATTCATCACATGTACTACG
GGATGTACTCTTACGGCCACCAGACCTCGAGGACGGTGGCTGTGGCACCA
TGACTGACCTCTACCAAAGTCGCGTGGAGAGCGACGGGTGGACCCCGAAA
GGTCCCATCTACATCCTCGACGACGATGATGAAATCATGTACAGCCCCAC
TAGCGTGACCGGCAAGTGGCTCCTCACCTCCGAGCTGTTCATCCGCAGCG
GGTCCGTCTTCTACTGCCGCGGCACCAGCATAGGTGGTGACTGCGACGAG
CTACGAATCCAGTCTACCGGTTCCACGGATTTCCACGAGGTACGTGGCCA
TGGAGGCAGCCTGTACTTCGAGAAGACCCTCGTCACCTCTTGGGACACCC
CAAACAAGAGCCCGCAAGAAGATTACGAAGACGGCCGTTCGTTCCTTAAC
TGCGTATCTGAGTACGAGTCGGACGAGACGTGTGAGGGCCAGCCTAAAAA
CGACTACGGGGAGTGCCGCATGGATATTATCGATTCCGAGATGGGCTACC
TGGGATGGTTCGACTCGGAGTCCTACGGTCTAACCTGGAAGGTCCGCGGG
TTTTGCGCCGACAAGAGCAACCCGGAGGTGTTCGACACAACGAACGTATA
CGGGGACATCAAGAACTCCGACATTCATCACATGTACTACGGGATGTACT
CTTACGGCCACCAGGGTGGTGTGTGGACGAACAACAAGATGCACGACAAC
CACCAGTACGGTTTCGACCCCCACGATGACTCGGACTACCTCACCATCGC
CAACAACGAGGTCTACGACAACGTGAATCACGGCATCATCGCCTCCAAGC
GCTGCAACAATGTTAAGATTTACGGAAATGAGGTTTACAACGGCGGTGCG
CAAGCTGCGGGCATCTTTCTCCACCGTAGCTCCGACAGCTGTGAGGTTTA
CGGGTGGTGTGTGGACGAACAACAAGATGCACGACAACCACCAGTACGGT
TTCGACCCCCACGATGACTCGGACTACCTCACCATCGCCAACAACGAGGT
CTACGACAACGTGAATCACGGCATCATCGCCTCCAAGCGCTGCAACAATG
TTAAGATTTACGGAAATGAGGTTTACAACGGCGGTGCGCAAGCTGCGGGC
ATCTTTCTCCACCGTAGCTCCGACAGCTGTGAGGTTTACGATAATGTCAT
TTATGACATGCAGGACGCCGGTCTGGCCATTCTGGAGTCTTTCGACGCCG
ACATCCATGACAACACATTTACTAACGTCAAGTACGGCATCCGTATCAGC
CTGGGCGGAGGCAACAACAACGTCTACGACAACGTGTTCGACCAATGCTC
CGAGTATAATGTCATTTATGACATGCAGGACGCCGGTCTGGCCATTCTGG
AGTCTTTCGACGCCGACATCCATGACAACACATTTACTAACGTCAAGTAC
GGCATCCGTATCAGCCTGGGCGGAGGCAACAACAACGTCTACGACAACGT
GTTCGACCAATGCTCCGAGTATGGTCTGTACACCTACCAGGGTTCTGATG
AACCCGAGGCTTCTTCCGACGGCCGACCTGGCGAGAACAGCTTTTACGAC
AACATAATCTCCAACACAGAGACGGGTGTCAAGATTAAAGAAGCAGACAA
CACCATTATCACCGATGGTCTGTACACCTACCAGGGTTCTGATGAACCCG
AGGCTTCTTCCGACGGCCGACCTGGCGAGAACAGCTTTTACGACAACATA
ATCTCCAACACAGAGACGGGTGTCAAGATTAAAGAAGCAGACAACACCAT
TATCACCGGCAACACCTTCACGGGGACTTCTCTTCTCGAATTCAACGACG
CTACGGATACTGCGTGGTCGGACAACACTTTCGAGGATGCTGACGATGAC
CTCTGCTACAAGAACTTCGAGAGTAGCTCGTTCGCGTCCACCGATACTCT
ACCTTCGCTGTGCTAAGCAACACCTTCACGGGGACTTCTCTTCTCGAATT
CAACGACGCTACGGATACTGCGTGGTCGGACAACACTTTCGAGGATGCTG
ACGATGACCTCTGCTACAAGAACTTCGAGAGTAGCTCGTTCGCGTCCACC
GATACTCTACCTTCGCTGTGCTAA
back to top