prot_F-serratus_M_contig110.953.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig110.953.1
Unique Nameprot_F-serratus_M_contig110.953.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length482
Homology
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 1.460e-150
Identity = 300/514 (58.37%), Postives = 345/514 (67.12%), Query Frame = 0
Query:    1 MNFTSRIRPRPRSWQLGSTRFILSVAAIVRSGLHIETDAFSV---AFVPSPGEAYAIDALSPSCSFWSATPWSTTTGRSGEPQRWS--SVPRGSLAGSGSAWDGRGRPGNSAGRRTALAALGTAFAPTNAV--------------SPRDEKDSYQERRATGESVNRITNFA-FG-RPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELG-REPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASST------NGSGSXXXXXXXXXXXXXXLGR---------ASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLRRRPER 477
            M+  SR+RPRPRSW  GS RF+LSVAAIVRSGLHI TDAF++   A  P    + +   L       +ATP      R      W   SV   +L G+    D   R     G  + L A+GTA AP+  V              S R  K S QE RA    +N IT+FA +G R T   MT++EE  LV EVK LA +LKTR+ L  ELG REP+ EEWA S+ ++  ELA QM AS RAQERIV AN GLIV+MARRHHP    +GTI +D+IQEGSLA+LRAAETF+PRLGYRFSTYAGWWVRDRV RCV +QAR+IRLPQ+VHNFRRT + TEA L+KELGR P Y+E AERMRVDV RV R  NCP+ FSLD AP  S+         SG XXXXXXXXXXXXXX            A GAGYRHE+VACSM++PEQ AE  LF++KLD L+SVLS DERLVV LRYGLGGASP T  EVA +AGSTKHRVRMVETRALNKLRRRP R
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRP-TSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTA-APSEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGSRDTAGRMTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRRRPGR 512          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.290e-105
Identity = 212/390 (54.36%), Postives = 251/390 (64.36%), Query Frame = 0
Query:    1 MNFTSRIRPRPRSWQLGSTRFILSVAAIVRSGLHIETDAFSVAFVPS-----PGEAYAIDALSPSCSFWSATPWSTTTGRSGEPQRWSSVPRGSLAGSGSAWDGRGRPGNSAGRR-----TALAALGTAFAPTNAV--------------SPRDEKDSYQERRATGESVNRITNFA-FG-RPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELG-REPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASS 363
            M+  SR+RPRPRSW +GS RF+LSVAAIVRSGLHI TDAF++   PS     P    A + L       +A P      R      W +    S+AG+       G      GRR     + L A+GTA  P+  V              S R  K S QE RA    +N IT+FA +G R T   MT++EE  LV EVK LA +LKTR+ L  ELG REP+ EEWA S+ ++  ELA QM AS RAQERIVEAN GLIV+MARRHHP    +GTI +D+IQEGSLA+LRAAETF+PRLGYRFSTYAGWWVRDRV RCV +QAR+IRLPQ+VHNFRRT + TEA L+KELGR P Y+E AERM VDV RV R  NCP+ FSLD AP  S+
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTL---PSGAGRPPRNGSASERLLLEVEAETAPPARNPQSRP-TSDAWCAR---SVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTA--PSEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQERIVEANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMEVDVERVTRLMNCPDAFSLDDAPPPSA 381          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.790e-48
Identity = 114/335 (34.03%), Postives = 174/335 (51.94%), Query Frame = 0
Query:  140 ATGESVNRITNF--AFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            A G S N +  F  + G+ ++  +   EE  L  +V+A+ G    R GL  +LGR P+LEEWA+SVGM   EL  ++   Q A++ ++ +N  L++ +A+R+     ++G    DLIQEGSL L+RA E F+P  G++FSTY+ WW++  + R + +Q+R IRLP H+H+   T+ K    L   LGR P  EE AERM + + ++     C        A   + T  S S                   G     + +      P Q  EA + +  ++ L+  LSP E+ V+ +R+GL    P TL E+      T+ RVR +E RAL+KLR
Sbjct:  152 AAGSSSNELGWFFKSIGQHSL--LRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQ----KRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGK---------------GGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLR 465          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A6U5F3I3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F3I3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.580e-47
Identity = 111/331 (33.53%), Postives = 171/331 (51.66%), Query Frame = 0
Query:  142 GESVNRITNFAFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            GES    T F   +     +T +EE  L  E+      ++ R+     +GR PS EEWA S  + + +L  Q++ S+ A+ R+V  N GL+V +A+++      +G    DL+QEG+L L+ AAE F P+ G++F TYA WW+R R+ R + E +R+IRLP+HVH     + KT   L  ELGR P   E A RM + + +V + +   +     + P++                       G+        + +A    +PE   EA L +A+L  +M  L+P ER V+ +R+GL   +  T+ EVA +   T+ +VR VE RALNKLR
Sbjct:  135 GESRISSTKFNSFQGRTALLTRAEEATLSNEISKFVSLIRIREDFERAVGRVPSDEEWAESTNLNIFDLLQQIKRSRDARARLVNGNVGLVVSIAKKYK----NRGLAFADLVQEGNLGLMEAAERFEPKKGFKFCTYASWWIRQRMTRSIAEYSRVIRLPEHVHMSLGIMQKTTKELTVELGRQPTKLEIASRMNIPLKKVEKLSVSSKIVLSLEIPVS-----------------------GKVDDRRTLKDGIASDSPTPEDHTEASLLRAELIAVMEELAPTERDVLMMRFGLDDGTSKTIDEVASRMKVTREKVRSVEARALNKLR 438          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A5B8NHW9_9CHRO (RNA polymerase sigma factor SigA n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A5B8NHW9_9CHRO)

HSP 1 Score: 172 bits (435), Expect = 3.970e-45
Identity = 113/349 (32.38%), Postives = 178/349 (51.00%), Query Frame = 0
Query:  124 NAVSPRDEKDSYQERRATGESVNRITNFAFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            N  S  D+ D  +++  T +S+ R+     GR  +R +   EE  L  ++  L    + R  L   +G EP+LEEWA  V M + +   ++   +RA+E++V++N  L+V +A+++      +G    DLIQEGSL L+RAAE F+   GY+FSTYA WW+R  + R + +Q+R IRLP H++     I KT  +L +ELGR P  EE AERM + + ++   A   +     + P+    +                  LG         + +     +PE      L +  L++++  LSP ER V+ LRYGL      TL E+ +    T+ R+R +E +AL KLR
Sbjct:   69 NTSSKPDKSDETEKKSYTEDSI-RLYLQEIGR--IRLLRADEEIELARKIADLLELERKRTELEATIGSEPTLEEWAQEVDMPLPKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR----------------LG---------DFIEADGETPEDEVSKSLLREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 385          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.070e-45
Identity = 112/313 (35.78%), Postives = 164/313 (52.40%), Query Frame = 0
Query:  165 EETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPET-FSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPE----QGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            EE AL  ++K        R+ L + L R PSL EWA  +G+    L   M  S RA+  ++ AN  L V +A+R+     R+G    DLIQEGS  L++AAE F+P  G++FSTYA WW++  + R + +Q+R IRLP HVH+F  ++ +    L  ELGR P  EE A R++V   ++V Y +  ++  S++Q+   +S  GSG                  AS  G     +  S+  PE       +  + +  L  L+  LSP E+ VV LR+GL      TL E+ +    T+ RVR +E+RAL KLR
Sbjct:   34 EEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYR----RRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSG------------------ASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLR 324          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: K9RTH4_SYNP3 (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RTH4_SYNP3)

HSP 1 Score: 167 bits (424), Expect = 2.180e-44
Identity = 109/317 (34.38%), Postives = 162/317 (51.10%), Query Frame = 0
Query:  160 PMTVSEETALVG-EVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYAN-CPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLRRR 474
            P+   E+  L G +V+ LA   +TR GL   LGREPSLEEWA+   ++  EL   ++  +RA+ ++VEAN  L+V +A+++     ++     DLIQEG++ + R  E F+P  GYRFSTYA WW+R  + R + E+ R IRLP H+      I K +  L + LGR     E A  + +  A+V  Y     +  SLD                           LG         E +    +SPE+       +A LD LM+ L+P +R V++LR+GL    P+TL +V +    ++ RVR +E  AL KLR+R
Sbjct:   22 PLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQGGERAKRKMVEANLRLVVSVAKKY----IKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATINELAVELELTPAQVREYLERARQPLSLD-----------------VRVGDNQDTELG---------ELLEDPSLSPEEFTSQSALRADLDRLMADLTPQQRQVIALRFGLEDGQPLTLAKVGDLLNISRERVRQIEREALGKLRKR 308          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A0M1JMH0_9CYAN (RNA polymerase sigma factor SigA n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=A0A0M1JMH0_9CYAN)

HSP 1 Score: 169 bits (427), Expect = 4.690e-44
Identity = 110/341 (32.26%), Postives = 178/341 (52.20%), Query Frame = 0
Query:  132 KDSYQERRATGESVNRITNFAFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            K   ++++ T +S+ R+     GR  +R +   EE  L  ++  L    + R+ L+ +L REP+L EW+++V M V E   ++   +RA+E++V++N  L+V +A+++      +G    DLIQEGSL L+RAAE F+   GY+FSTYA WW+R  + R + +Q+R IRLP H++     I KT  LL +E+GR P  EE A RM + + ++   A   +     + P+    +                  LG         + +     +PE      L +  L++++  LSP ER V+ LRYGL      TL E+ +    T+ R+R +E +AL KLR
Sbjct:   70 KTQAKKKQYTEDSI-RLYLQEIGR--IRLLRADEEIELARKIADLLELERVREELMDQLDREPNLLEWSSAVRMGVPEFRKRLHMGRRAKEKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR----------------LG---------DFIESDGETPEDQVSKSLLREDLESVLDTLSPRERDVLRLRYGLDDGKMKTLEEIGQLFNVTRERIRQIEAKALRKLR 378          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: K9YFR5_HALP7 (RNA polymerase sigma factor SigA n=3 Tax=Cyanobacteria TaxID=1117 RepID=K9YFR5_HALP7)

HSP 1 Score: 169 bits (427), Expect = 5.020e-44
Identity = 110/350 (31.43%), Postives = 176/350 (50.29%), Query Frame = 0
Query:  123 TNAVSPRDEKDSYQERRATGESVNRITNFAFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            T AV+   E++S ++ +    + + I  +      +R +   EE  L  ++  L    + R  L   +G EP+ EEWA  V M + +   ++   +RA+E++V++N  L+V +A+++      +G    DLIQEGSL L+RAAE F+   GY+FSTYA WW+R  + R + +Q+R IRLP H++     I KT  LL +ELGR P  EE AERM + + ++   A   +     + P+    +                  LG         + +     +PE      L +  L++++  LSP ER V+ LRYGL      TL E+ +    T+ R+R +E +AL KLR
Sbjct:   60 TKAVTATKEENSKEDSKKKSYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR----------------LG---------DFIEADGETPEDEVSKSLLREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 380          
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Match: A0A6M8B3D8_9CYAN (RNA polymerase sigma factor SigA n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M8B3D8_9CYAN)

HSP 1 Score: 168 bits (425), Expect = 6.460e-44
Identity = 112/359 (31.20%), Postives = 175/359 (48.75%), Query Frame = 0
Query:  126 VSPRDEKDSYQERRATGESVNR------------ITNFAFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWATSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIANDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIRLPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCPETFSLDQAPLASSTNGSGSXXXXXXXXXXXXXXLGRASGAGYRHEKVACSMISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVAEKAGSTKHRVRMVETRALNKLR 472
            + P DE +   E+ A G S  R            I  +      +R +   EE  L  ++  L    + R+ LV +L REP   EWA++V M +     ++   +RA++++V++N  L+V +A+++      +G    DLIQEGSL L+RAAE F+   GY+FSTYA WW+R  + R + +Q+R IRLP H++     I KT  LL +E+GR P  EE A RM + + ++   A   +     + P+    +                  LG         + +     +PE      L +  L+ ++S LSP ER V+ LRYGL      TL E+ +    T+ R+R +E +AL KLR
Sbjct:   34 IQPEDEAEEDDEKPAKGRSRRRTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLVQDLAREPKHAEWASAVEMELPAFRHRLHVGRRAKDKMVQSNLRLVVSIAKKY----MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR----------------LG---------DFIESDGETPEDQVSKSLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig110.953.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA7_ECTSI1.460e-15058.37RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
A0A6H5KNQ9_9PHAE1.290e-10554.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WX55_9STRA2.790e-4834.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U5F3I3_9STRA2.580e-4733.53Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A5B8NHW9_9CHRO3.970e-4532.38RNA polymerase sigma factor SigA n=2 Tax=Cyanobact... [more]
A0A835ZBY3_9STRA4.070e-4535.78RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
K9RTH4_SYNP32.180e-4434.38RNA polymerase sigma factor, cyanobacterial RpoD-l... [more]
A0A0M1JMH0_9CYAN4.690e-4432.26RNA polymerase sigma factor SigA n=1 Tax=Planktoth... [more]
K9YFR5_HALP75.020e-4431.43RNA polymerase sigma factor SigA n=3 Tax=Cyanobact... [more]
A0A6M8B3D8_9CYAN6.460e-4431.20RNA polymerase sigma factor SigA n=6 Tax=Cyanobact... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 424..436
score: 40.1
coord: 460..471
score: 44.95
coord: 252..265
score: 59.03
coord: 276..284
score: 71.18
coord: 445..460
score: 37.26
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 220..473
e-value: 4.5E-22
score: 76.4
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 225..290
e-value: 4.1E-10
score: 39.3
NoneNo IPR availableGENE3D1.10.601.10coord: 162..298
e-value: 8.7E-27
score: 96.5
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 145..479
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 299..348
e-value: 1.1E-7
score: 33.7
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 403..480
e-value: 1.1E-16
score: 62.4
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 421..473
e-value: 1.6E-11
score: 43.5
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 297..346
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 400..476
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 155..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig110contigF-serratus_M_contig110:527913..542288 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig110.953.1mRNA_F-serratus_M_contig110.953.1Fucus serratus malemRNAF-serratus_M_contig110 526788..542328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig110.953.1 ID=prot_F-serratus_M_contig110.953.1|Name=mRNA_F-serratus_M_contig110.953.1|organism=Fucus serratus male|type=polypeptide|length=482bp
MNFTSRIRPRPRSWQLGSTRFILSVAAIVRSGLHIETDAFSVAFVPSPGE
AYAIDALSPSCSFWSATPWSTTTGRSGEPQRWSSVPRGSLAGSGSAWDGR
GRPGNSAGRRTALAALGTAFAPTNAVSPRDEKDSYQERRATGESVNRITN
FAFGRPTVRPMTVSEETALVGEVKALAGHLKTRQGLVVELGREPSLEEWA
TSVGMTVHELAAQMEASQRAQERIVEANTGLIVLMARRHHPFAFRQGTIA
NDLIQEGSLALLRAAETFNPRLGYRFSTYAGWWVRDRVQRCVVEQARLIR
LPQHVHNFRRTIAKTEALLMKELGRPPKYEETAERMRVDVARVVRYANCP
ETFSLDQAPLASSTNGSGSGGCGSGIGGTGVRGLGRASGAGYRHEKVACS
MISPEQGAEAFLFQAKLDNLMSVLSPDERLVVSLRYGLGGASPVTLTEVA
EKAGSTKHRVRMVETRALNKLRRRPERRRGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR036388WH-like_DNA-bd_sf
IPR007630RNA_pol_sigma70_r4
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2