prot_F-serratus_M_contig916.20568.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig916.20568.1
Unique Nameprot_F-serratus_M_contig916.20568.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length235
Homology
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A151QLV5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QLV5_CAJCA)

HSP 1 Score: 167 bits (422), Expect = 7.050e-46
Identity = 100/247 (40.49%), Postives = 140/247 (56.68%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAKIPAASGVPTLSKADE------PQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            + + GFE+  +D CV++KV       +V++VDDIL    DK  +      L + F +KDMG+A Y +G  I + R    L L Q  Y+  +++RF++K       +  V  + K D+      P+N  E+E MK  PY  AVG+LM+    TRPDIA AV V+ R+  NPG  H KA  K+ +YL  TKD+ + Y      L +  Y+DSDF  C+DTR+S SG V MLA GA+SW SR Q +TA S
Sbjct:   71 ISSFGFEENIMDQCVYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKD-----CSPSVAPIVKGDKLELSQCPKNNLEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKDFMLIYRRTD-SLEVIGYSDSDFAGCIDTRKSTSGYVFMLACGAVSWSSRKQTLTATS 311          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A2P4YNZ8_9STRA (Retrovirus-related pol Polyprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNZ8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.910e-45
Identity = 93/243 (38.27%), Postives = 143/243 (58.85%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRK------VVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAKIPAASGVPT--LSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            +K +GF+     PCV+ +       +V ++VDD+L  +++K  +    A + +KF++KD+G A + +G  I  + + + L + Q  Y E +I +F ++  AK    S  P+  L+KADEPQN ++K +MK  PYR  VG+LM+ A  TRPDIA AV  ++R+ ENP   H  A +K+ +YL  TKD  ITY G+  G  + AY+D+D+    D RRSVSG +LM+    + W S  Q+  A S
Sbjct:    5 LKTMGFKAGDAGPCVYTRGEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTEPIINKFGLE-NAKPSLTSLDPSVHLTKADEPQNADDKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPDHRHWDAGIKVVRYLMKTKDAAITYDGR-MGTELTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQKTVALS 245          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A5D3DI92_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DI92_CUCME)

HSP 1 Score: 165 bits (417), Expect = 4.610e-45
Identity = 95/243 (39.09%), Postives = 144/243 (59.26%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            +K+ GF+Q   +PCV++K+       +V++VDDIL    D   +    A L  +F++KD+G+ +Y +G  I ++RK + L L Q  Y++ M+ R+ ++   K  +P   GV  LSK   P+ P+E E+M+   Y  AVG+LM+    TRPDI  AV +V+R+  NPG  H  AV  I +YL  T+D+ + YGG+   L +  YTDSDF    D+R+S SG+V  L +GA+ WHS  Q   A+S
Sbjct:   79 IKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLATQFQMKDLGETQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKDLLPFRHGV-HLSKEQCPKTPQEIEDMRRILYASAVGSLMYDMLYTRPDICYAVGIVSRYLFNPGLDHWTAVKIILKYLRRTRDYMLVYGGKD--LILTGYTDSDFQTDKDSRKSTSGSVFTLNRGAVVWHSIKQGCIADS 318          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 168 bits (426), Expect = 2.150e-44
Identity = 99/243 (40.74%), Postives = 143/243 (58.85%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            +K+ GF Q   +PCV++KV       ++++VDDIL    D   M      L   F +KD+G+A Y +G  + ++RK R L L Q  Y++ ++ RF ++   K   P   GV  LSK   P+  EE+E+M+  PY  AVG+LM+    TRPDI  AV +V+R+  NPGP H  AV  I +YL  TK + + +G +   L ++ YTDSDF + +D R+S+SG V  L KGAISW S  Q+ TA+S
Sbjct:  482 IKSFGFSQNIDEPCVYKKVSGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGV-HLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADS 721          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 164 bits (414), Expect = 5.050e-44
Identity = 92/243 (37.86%), Postives = 144/243 (59.26%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            ++   F + + +PCV++K+       +V++VDDIL    D  +M      L ++F +KD+G+A Y +G  I ++R  R L L Q +Y+++++KR++++K  +  +P   GV +LS+ + P+  EE+E M   PY  AVGA+M+T T TRPD+A A+ V +R+  NPG  H K V  I +YL  TKD  + YG     L ++ YTD+ F +  D  +S+SG V  L  GAISW S  Q   A+S
Sbjct:  260 IEKFNFVKCEEEPCVYKKISGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADS 499          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A438BZI3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZI3_VITVI)

HSP 1 Score: 164 bits (416), Expect = 1.440e-43
Identity = 94/239 (39.33%), Postives = 137/239 (57.32%), Query Frame = 0
Query:    5 GFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            GF++  VD C++ +V       +V++VDDIL  + D   +      L   F +KD+G+A Y +G  I ++R    LKL Q  Y+E ++KRF++   K  K P   G    SKA  PQN +E+EEMK  PY   VG+LM+    TRPDIA  V ++ R+  NPG  H KA  K+ +YL  TKD  +TY      L +  + D+DF  C+D ++S +G + M+A GA+SW S  Q +TA+S
Sbjct:  293 GFKENTVDRCIYLRVSGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKFTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSL-LDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASS 529          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO)

HSP 1 Score: 166 bits (421), Expect = 1.530e-43
Identity = 97/243 (39.92%), Postives = 139/243 (57.20%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            + +  FE+  +D C+++KV       +V++VDDIL    DK  +      L + F +KDMG+A Y +G  I + R    L L Q  Y+  +++RF++K    +  P   G   L+ +  P+N  E+E MK  PY  AVG+LM+    TRPDIA AV V+ R+  NPG  H KA  K+ +YL  TKD+ + Y    C L +  Y+DSDF  C+D+RRS SG + MLA GA+SW S  Q +TA S
Sbjct: 1213 ISSFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKG-DKLALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATS 1453          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO)

HSP 1 Score: 166 bits (421), Expect = 1.590e-43
Identity = 97/243 (39.92%), Postives = 139/243 (57.20%), Query Frame = 0
Query:    1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            + +  FE+  +D C+++KV       +V++VDDIL    DK  +      L + F +KDMG+A Y +G  I + R    L L Q  Y+  +++RF++K    +  P   G   L+ +  P+N  E+E MK  PY  AVG+LM+    TRPDIA AV V+ R+  NPG  H KA  K+ +YL  TKD+ + Y    C L +  Y+DSDF  C+D+RRS SG + MLA GA+SW S  Q +TA S
Sbjct: 1987 ISSFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKG-DKLALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATS 2227          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 162 bits (411), Expect = 1.900e-43
Identity = 93/241 (38.59%), Postives = 139/241 (57.68%), Query Frame = 0
Query:    3 AIGFEQAKVDPCVFRK------VVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            + GF++  VD C++ K      +++V++VDDIL  + D   +      L  KF +KD+G+A + +G  I ++R    L L Q  Y++ ++ RF +   A    P A G    S    P+N  EK++M+ FPY  AVG+LM+    TRPDIA  V ++ R+  NPG  H K   ++ +YL  TKD+ +TY  +   L + AY+DSDF  CLD+RRS SG + MLA GA+SW S  Q + A+S
Sbjct:  176 SFGFKENTVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKG-DKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASS 414          
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A445FSL3_GLYSO (Peroxidase n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FSL3_GLYSO)

HSP 1 Score: 166 bits (420), Expect = 1.910e-43
Identity = 97/241 (40.25%), Postives = 138/241 (57.26%), Query Frame = 0
Query:    3 AIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 235
            +  FE+  +D C+++KV       +V++VDDIL    DK  +      L + F +KDMG+A Y +G  I + R    L L Q  Y+  +++RFD+K    +  P   G   L+ +  P+N  E+E+MK  PY  AVG+LM+    TRPDI  AV V+ R+  NPG  H KA  K+ +YL  TKD+ + Y    C L +  Y+DSDF  C+D+RRS SG + MLA GA+SW S  Q +TA S
Sbjct:   60 SFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFHIKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFDMKDCSPSVAPIVKG-DKLALSQCPKNDFEREKMKNIPYASAVGSLMYAQVCTRPDIVFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYKQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLAGGAVSWRSAKQTLTATS 298          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151QLV5_CAJCA7.050e-4640.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P4YNZ8_9STRA3.910e-4538.27Retrovirus-related pol Polyprotein (Fragment) n=1 ... [more]
A0A5D3DI92_CUCME4.610e-4539.09Gag/pol protein n=2 Tax=Cucumis melo var. makuwa T... [more]
A0A2N9IUC8_FAGSY2.150e-4440.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A2K3MAN7_TRIPR5.050e-4437.86Retrotransposon protein putative Ty1-copia subclas... [more]
A0A438BZI3_VITVI1.440e-4339.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FBE9_GLYSO1.530e-4339.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FAJ6_GLYSO1.590e-4339.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HUL4_VITVI1.900e-4338.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FSL3_GLYSO1.910e-4340.25Peroxidase n=1 Tax=Glycine soja TaxID=3848 RepID=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 18..93
e-value: 4.6E-13
score: 49.4
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 123..234
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 123..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig916contigF-serratus_M_contig916:227094..227798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig916.20568.1mRNA_F-serratus_M_contig916.20568.1Fucus serratus malemRNAF-serratus_M_contig916 227094..227798 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig916.20568.1 ID=prot_F-serratus_M_contig916.20568.1|Name=mRNA_F-serratus_M_contig916.20568.1|organism=Fucus serratus male|type=polypeptide|length=235bp
MKAIGFEQAKVDPCVFRKVVVVVHVDDILAHAKDKATMDRFAAELGQKFK
LKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAKIPAA
SGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRV
VARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDF
GACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like