mRNA_F-serratus_M_contig916.20568.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A151QLV5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QLV5_CAJCA) HSP 1 Score: 167 bits (422), Expect = 7.050e-46 Identity = 100/247 (40.49%), Postives = 140/247 (56.68%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAKIPAASGVPTLSKADE------PQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+ + GFE+ +D CV++KV +V++VDDIL DK + L + F +KDMG+A Y +G I + R L L Q Y+ +++RF++K + V + K D+ P+N E+E MK PY AVG+LM+ TRPDIA AV V+ R+ NPG H KA K+ +YL TKD+ + Y L + Y+DSDF C+DTR+S SG V MLA GA+SW SR Q +TA S
Sbjct: 71 ISSFGFEENIMDQCVYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKD-----CSPSVAPIVKGDKLELSQCPKNNLEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKDFMLIYRRTD-SLEVIGYSDSDFAGCIDTRKSTSGYVFMLACGAVSWSSRKQTLTATS 311
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A2P4YNZ8_9STRA (Retrovirus-related pol Polyprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNZ8_9STRA) HSP 1 Score: 161 bits (408), Expect = 3.910e-45 Identity = 93/243 (38.27%), Postives = 143/243 (58.85%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRK------VVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAKIPAASGVPT--LSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+K +GF+ PCV+ + +V ++VDD+L +++K + A + +KF++KD+G A + +G I + + + L + Q Y E +I +F ++ AK S P+ L+KADEPQN ++K +MK PYR VG+LM+ A TRPDIA AV ++R+ ENP H A +K+ +YL TKD ITY G+ G + AY+D+D+ D RRSVSG +LM+ + W S Q+ A S
Sbjct: 5 LKTMGFKAGDAGPCVYTRGEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTEPIINKFGLE-NAKPSLTSLDPSVHLTKADEPQNADDKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPDHRHWDAGIKVVRYLMKTKDAAITYDGR-MGTELTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQKTVALS 245
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A5D3DI92_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DI92_CUCME) HSP 1 Score: 165 bits (417), Expect = 4.610e-45 Identity = 95/243 (39.09%), Postives = 144/243 (59.26%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+K+ GF+Q +PCV++K+ +V++VDDIL D + A L +F++KD+G+ +Y +G I ++RK + L L Q Y++ M+ R+ ++ K +P GV LSK P+ P+E E+M+ Y AVG+LM+ TRPDI AV +V+R+ NPG H AV I +YL T+D+ + YGG+ L + YTDSDF D+R+S SG+V L +GA+ WHS Q A+S
Sbjct: 79 IKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLATQFQMKDLGETQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKDLLPFRHGV-HLSKEQCPKTPQEIEDMRRILYASAVGSLMYDMLYTRPDICYAVGIVSRYLFNPGLDHWTAVKIILKYLRRTRDYMLVYGGKD--LILTGYTDSDFQTDKDSRKSTSGSVFTLNRGAVVWHSIKQGCIADS 318
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY) HSP 1 Score: 168 bits (426), Expect = 2.150e-44 Identity = 99/243 (40.74%), Postives = 143/243 (58.85%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+K+ GF Q +PCV++KV ++++VDDIL D M L F +KD+G+A Y +G + ++RK R L L Q Y++ ++ RF ++ K P GV LSK P+ EE+E+M+ PY AVG+LM+ TRPDI AV +V+R+ NPGP H AV I +YL TK + + +G + L ++ YTDSDF + +D R+S+SG V L KGAISW S Q+ TA+S
Sbjct: 482 IKSFGFSQNIDEPCVYKKVSGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGV-HLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADS 721
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 164 bits (414), Expect = 5.050e-44 Identity = 92/243 (37.86%), Postives = 144/243 (59.26%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
++ F + + +PCV++K+ +V++VDDIL D +M L ++F +KD+G+A Y +G I ++R R L L Q +Y+++++KR++++K + +P GV +LS+ + P+ EE+E M PY AVGA+M+T T TRPD+A A+ V +R+ NPG H K V I +YL TKD + YG L ++ YTD+ F + D +S+SG V L GAISW S Q A+S
Sbjct: 260 IEKFNFVKCEEEPCVYKKISGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADS 499
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A438BZI3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZI3_VITVI) HSP 1 Score: 164 bits (416), Expect = 1.440e-43 Identity = 94/239 (39.33%), Postives = 137/239 (57.32%), Query Frame = 1
Query: 13 GFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
GF++ VD C++ +V +V++VDDIL + D + L F +KD+G+A Y +G I ++R LKL Q Y+E ++KRF++ K K P G SKA PQN +E+EEMK PY VG+LM+ TRPDIA V ++ R+ NPG H KA K+ +YL TKD +TY L + + D+DF C+D ++S +G + M+A GA+SW S Q +TA+S
Sbjct: 293 GFKENTVDRCIYLRVSGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIEKILKRFNMHNCKFTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSL-LDVVGFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASS 529
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO) HSP 1 Score: 166 bits (421), Expect = 1.530e-43 Identity = 97/243 (39.92%), Postives = 139/243 (57.20%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+ + FE+ +D C+++KV +V++VDDIL DK + L + F +KDMG+A Y +G I + R L L Q Y+ +++RF++K + P G L+ + P+N E+E MK PY AVG+LM+ TRPDIA AV V+ R+ NPG H KA K+ +YL TKD+ + Y C L + Y+DSDF C+D+RRS SG + MLA GA+SW S Q +TA S
Sbjct: 1213 ISSFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKG-DKLALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATS 1453
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO) HSP 1 Score: 166 bits (421), Expect = 1.590e-43 Identity = 97/243 (39.92%), Postives = 139/243 (57.20%), Query Frame = 1
Query: 1 MKAIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+ + FE+ +D C+++KV +V++VDDIL DK + L + F +KDMG+A Y +G I + R L L Q Y+ +++RF++K + P G L+ + P+N E+E MK PY AVG+LM+ TRPDIA AV V+ R+ NPG H KA K+ +YL TKD+ + Y C L + Y+DSDF C+D+RRS SG + MLA GA+SW S Q +TA S
Sbjct: 1987 ISSFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKG-DKLALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATS 2227
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 162 bits (411), Expect = 1.900e-43 Identity = 93/241 (38.59%), Postives = 139/241 (57.68%), Query Frame = 1
Query: 7 AIGFEQAKVDPCVFRK------VVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVKKEAK--IPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+ GF++ VD C++ K +++V++VDDIL + D + L KF +KD+G+A + +G I ++R L L Q Y++ ++ RF + A P A G S P+N EK++M+ FPY AVG+LM+ TRPDIA V ++ R+ NPG H K ++ +YL TKD+ +TY + L + AY+DSDF CLD+RRS SG + MLA GA+SW S Q + A+S
Sbjct: 176 SFGFKENTVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKG-DKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASS 414
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Match: A0A445FSL3_GLYSO (Peroxidase n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FSL3_GLYSO) HSP 1 Score: 166 bits (420), Expect = 1.910e-43 Identity = 97/241 (40.25%), Postives = 138/241 (57.26%), Query Frame = 1
Query: 7 AIGFEQAKVDPCVFRKV------VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITQNRKTRELKLDQHLYVESMIKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRVVARFCENPGPAHKKAVMKIFQYLFHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTANS 705
+ FE+ +D C+++KV +V++VDDIL DK + L + F +KDMG+A Y +G I + R L L Q Y+ +++RFD+K + P G L+ + P+N E+E+MK PY AVG+LM+ TRPDI AV V+ R+ NPG H KA K+ +YL TKD+ + Y C L + Y+DSDF C+D+RRS SG + MLA GA+SW S Q +TA S
Sbjct: 60 SFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFHIKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFDMKDCSPSVAPIVKG-DKLALSQCPKNDFEREKMKNIPYASAVGSLMYAQVCTRPDIVFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYKQTDC-LEVIGYSDSDFAGCVDSRRSTSGYIFMLAGGAVSWRSAKQTLTATS 298 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig916.20568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig916.20568.1 >prot_F-serratus_M_contig916.20568.1 ID=prot_F-serratus_M_contig916.20568.1|Name=mRNA_F-serratus_M_contig916.20568.1|organism=Fucus serratus male|type=polypeptide|length=235bp MKAIGFEQAKVDPCVFRKVVVVVHVDDILAHAKDKATMDRFAAELGQKFKback to top mRNA from alignment at F-serratus_M_contig916:227094..227798+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig916.20568.1 ID=mRNA_F-serratus_M_contig916.20568.1|Name=mRNA_F-serratus_M_contig916.20568.1|organism=Fucus serratus male|type=mRNA|length=705bp|location=Sequence derived from alignment at F-serratus_M_contig916:227094..227798+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig916:227094..227798+ >mRNA_F-serratus_M_contig916.20568.1 ID=mRNA_F-serratus_M_contig916.20568.1|Name=mRNA_F-serratus_M_contig916.20568.1|organism=Fucus serratus male|type=CDS|length=1410bp|location=Sequence derived from alignment at F-serratus_M_contig916:227094..227798+ (Fucus serratus male)back to top |