prot_F-serratus_M_contig915.20561.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig915.20561.1
Unique Name	prot_F-serratus_M_contig915.20561.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	262

Homology

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: D7G5Q8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q8_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 1.070e-142
Identity = 199/255 (78.04%), Postives = 222/255 (87.06%), Query Frame = 0

Query:    7 IMSTRVDATAEPTSGGKSRAVPFLPRPKALDGSMVGDVGFDPLGLATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGWADDEMRLREIKHGRLAMAAFAFHYAGVLLDKKGVVVGHQLWGEVCVINLKWGANPLPPPICYPRPEAALDTTLSWEIMWRVLTGFFKEPYY 261
            +MS+R+    + T   +S A+PFLPRP+ALDG+M+GDVGFDPLG A  DNLDRYREAELKHGRLAMVALAGWPVA++ L LLT L+PP TVCTGNGCAID+ +SGSALPLEAIG VSFVYWGSALALAVAAEL ++ +R  +   R GPD YR+GDLGLDPF  ADDEMRLREIKHGRLAMAAFAFHYAGVLL+KKGVVVGHQLWG VCV NLKWG + LPPPICYPRPEAALDTTLSWEIM+RVL+GFFKEPYY
Sbjct:    1 MMSSRLPVIPD-TDAPRSVALPFLPRPEALDGTMIGDVGFDPLGFAAEDNLDRYREAELKHGRLAMVALAGWPVATLFLGLLTKLIPPATVCTGNGCAIDQTWSGSALPLEAIGNVSFVYWGSALALAVAAELVAI-RRKQSSVGRVGPDEYRAGDLGLDPFNLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGMSSLPPPICYPRPEAALDTTLSWEIMYRVLSGFFKEPYY 253

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: A0A835ZHI1_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI1_9STRA)

HSP 1 Score: 311 bits (796), Expect = 4.630e-104
Identity = 154/240 (64.17%), Postives = 175/240 (72.92%), Query Frame = 0

Query:   22 GKSRAVPFLPRPKALDGSMVGDVGFDPLGLATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGWADDEMRLREIKHGRLAMAAFAFHYAGVLLDKKGVVVGHQLWGEVCVINLKWGANPLPPPICYPRPEAALDTTLSWEIMWRVLTGFFKEPYY 261
            GKSRA+PFL  P      M GD GFDPLG AT DN+DR RE ELKHGRLAMVAL GWPVA ++L LL   VPP TVCTG+GC +D   S  ALPL+AIGR   VYW SALALA+ AE+ +L +R +      GPD    GDLG+DPF  A D+MRL+E+KHGRLAMAAFA HYAGVL   KGVV  HQ+W +VCV N +      P PICYPRPEAALDT LSWEIM+RVLTG+FKEPYY
Sbjct:   10 GKSRALPFLQAPFFAGSDMTGDAGFDPLGFATEDNIDRMRECELKHGRLAMVALGGWPVAELVLGLLQRAVPPATVCTGSGCTVDSSLSAYALPLQAIGRFGAVYWASALALAIVAEVAALKRRQEW-----GPD-LPLGDLGVDPFKLASDDMRLKELKHGRLAMAAFAVHYAGVLAKNKGVVFAHQMWSQVCVYNFRADLG-FPAPICYPRPEAALDTVLSWEIMFRVLTGYFKEPYY 242

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: A0A0M0K4A5_9EUKA (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4A5_9EUKA)

HSP 1 Score: 199 bits (506), Expect = 3.640e-60
Identity = 124/250 (49.60%), Postives = 148/250 (59.20%), Query Frame = 0

Query:   23 KSRAVPFLPRPKALDGSMVGDVGFDPLGLATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSG--SALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGW---ADDEMRLR----EIKHGRLAMAAFAFHYAGVLLDKKGVVVGHQLWGEVCVINL-KWGANPLPPPICYPR-PEAALDTTLSWEIMWRVLTGFFKEPYY 261
            +S +VPFLPRP ALDG+M+GDVGFDPLG+AT  NL R REAEL+HGRLAMVA  GWP+A    AL   LVP  TVCTG GC +D+   G  +AL L  IG+VS  YWGS LALAV  EL          R R G           DP      ADD  R+R    E+KHGRLAM A A +++  LL           WGE CV +L +  A  L    CYP+    A D  LSWEI++R LTG+F+EPY+
Sbjct:   22 RSISVPFLPRPAALDGTMIGDVGFDPLGIATTANLARMREAELRHGRLAMVATWGWPIAEGGFALAQKLVPVSTVCTGVGCYVDKTDEGRQAALQLADIGQVSIAYWGSLLALAVHGEL----------RARQG--------CYFDPLRLYVDADDTERVRLQLAELKHGRLAMCAVATYWSTKLL-----------WGETCVYSLTRQSAQAL----CYPQYTNEAFDYVLSWEILFRTLTGYFREPYF 238

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: A0A7S0L6L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L6L5_9EUKA)

HSP 1 Score: 187 bits (476), Expect = 2.640e-55
Identity = 117/268 (43.66%), Postives = 148/268 (55.22%), Query Frame = 0

Query:   18 PTSGGKSRAVPFLPRPKALDGSMVGDVGFDPLGLATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAID--EPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFG-WA------DDEMRLREIKHGRLAMAAFAFHYAGVL--------------LDKKGVVVGHQLWGEVCVINLKWGANPLPPPICYPR-PEAALDTTLSWEIMWRVLTGFFKEPYY 261
            P +  +S A+PF+P P +LDGS+VGD GFDPLGLAT ++L R R AEL+H RLAMVA  GWP+A     +   LVP ++VCTG GC +D  E    +AL L  IG +S  YWG  LA A+A EL          R RS  +G  SG    DP   W        + + L EIKHGRLAM A A H+A  L              + K  +   HQLW + CV +L          ICYP+      D  LSWEIM+RV+TG+F+EPY+
Sbjct:   15 PNAPRQSLALPFIPAPLSLDGSLVGDAGFDPLGLATVESLPRLRAAELRHARLAMVATWGWPIAESGFWIAQKLVPVKSVCTGGGCYVDSTEGARQAALQLADIGVISVGYWGLLLAAAIAGEL----------RARS-LEG--SGQPAFDPLSLWTAADAPEQERLELAEIKHGRLAMVAIAAHWATKLGAACGSAAAAAAAGVPKGTLTFAHQLWSQTCVYSLTKQTT-----ICYPQFTNDQFDFILSWEIMFRVVTGYFREPYF 264

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: R1D3G8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3G8_EMIHU)

HSP 1 Score: 171 bits (432), Expect = 2.700e-49
Identity = 107/249 (42.97%), Postives = 138/249 (55.42%), Query Frame = 0

Query:   18 PTSGGKSR--AVPFLPRPKALDGSMVGDVGFDPLGLATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSG--SALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGWADDEMRLREIKHGRLAMAAFAFHYAGVLLDKKGVVVGHQLWGEVCVINLKWGANPLPPPICYPRPEAA-LDTTLSWEIMWRVLTGFFKEPYY 261
            PTS    R  A+P L  P      M+GD+GFDPLGLAT DNL R REAE++HGRLAMVA  GWPVA +  A+   L+P  +VC+G+GC +D   +G  +AL L  IG +S  YWG+ LA   AA  G  +   D  RLR                      + L E+KHGRLAMAA A H+A  L   +G        GE CV +       +   +C P+  AA  D  LS+EI++RVLTG+F+EPY+
Sbjct:    3 PTSPSTPRSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGALLA--AAARRGCAF---DPLRLR----------------------LELAELKHGRLAMAAVALHWATKLAGARGSAAAALAAGETCVYSAAESLRSVQG-VCMPQWTAAPFDAVLSYEILFRVLTGYFREPYF 217

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: R1CT78_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CT78_EMIHU)

HSP 1 Score: 122 bits (307), Expect = 1.480e-31
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 0

Query:   23 KSRAVPFLPRPKALDGSMVGDVGFDPLGLATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSG--SALPLEAIGRVSFVYWGSALALAVAAEL 139
            +S A+P L  P      M+GD+GFDPLGLAT DNL R REAE++HGRLAMVA  GWPVA +  A+   L+P  +VC+G+GC +D   +G  +AL L  IG +S  YWG+ LA AV  EL
Sbjct:   21 RSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGTLLAAAVTGEL 133

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: B7G4U8_PHATC (Protein fucoxanthin chlorophyll a/c protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4U8_PHATC)

HSP 1 Score: 123 bits (309), Expect = 1.910e-30
Identity = 82/201 (40.80%), Postives = 115/201 (57.21%), Query Frame = 0

Query:   13 DATAEPTSGGK-SRAVPFLPRPKALDGSMVGDVGFDPLGLA-TPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGW------ADDEMRLREIKHGRLAMAAFAFHYAGVLLDKKGVV 205
            D T  P +  K S+++PF+ RP ALDG++VGDVGFDPLG A T  +L  YREAE+KH RLAM+A AGWP++ +  A +   +    +   N  A        +L    +G+VS VYW + L  A A ++  + K    E     PD Y  G+LG+DPFG       A ++M+L+E+K+GRLAM A +       + K GVV
Sbjct:   48 DVTPPPPALPKMSQSLPFMERPAALDGTLVGDVGFDPLGFAKTKADLINYREAEVKHARLAMLAAAGWPLSELFDAKIANWMGMTPLLDANDRA-------PSLLNGGLGKVSPVYWVACLVAAAAIDVYGISKARKNE-----PD-YFPGNLGIDPFGLFPKDAAAQEDMKLKELKNGRLAMIAISAFAFQEFVSKFGVV 235

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: K0T6G6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T6G6_THAOC)

HSP 1 Score: 122 bits (307), Expect = 3.680e-30
Identity = 81/210 (38.57%), Postives = 110/210 (52.38%), Query Frame = 0

Query:    5 PPIMSTRVDATAEPTSGGKSRAVPFLPRPKALDGSMVGDVGFDPLGLA-TPDNLDRYREAELKHGRLAMVALAGWPVASII---LALLTGLVPPETVCTGNGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGWADDE-----MRLREIKHGRLAMAAFAFHYAGVLLDKKGVV 205
            P +M+      A      +S ++PFL RP ALDG+MVGDVGFDPLG A   D+L  YREAE+KHGRLAM+A AGWP++ +    +A   G+ P           +D      +L    +G++S  YW   L  A   ++          +LR   DGY+ GD GL   G+  DE     M+L E+K+GRLAM A         + K+GVV
Sbjct:   45 PAVMAVESSGAAAAALPAQSASIPFLARPAALDGTMVGDVGFDPLGFAKNKDDLANYREAEIKHGRLAMLAAAGWPLSELFDKKIAAALGMAP----------VLDASDRVPSLLNGGLGKISPAYWIGCLGAAALVDV--------LGQLRMKGDGYQPGDYGL-RLGYPADEAGRERMQLAELKNGRLAMIAIFGFAVQEFVTKQGVV 235

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: A0A7S3Q9Z2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9Z2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.110e-28
Identity = 76/183 (41.53%), Postives = 102/183 (55.74%), Query Frame = 0

Query:   23 KSRAVPFLPRPKALDGSMVGDVGFDPLGLA-TPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTG---LVPPETVCTGNGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGWADDE--------MRLREIKHGRLAMAAFAFH 193
            +S+A+PF+ RP  LDGSM GDVGFDPLGLA +P  L  +REAE+KH RLAM+A AGWP++ ++   + G   L P          A+D   +G A P  A+      YW   LA A   ++   +   D +      + Y  G+LG DP G+  D+        M+L EIKHGR AM AFAF+
Sbjct:   61 QSKAIPFMERPDLLDGSMAGDVGFDPLGLAKSPKMLRMFREAEVKHARLAMLAAAGWPLSELLDKKIAGFFNLAP----------ALDA--AGRATP-SALSHTIDSYWIGVLAFAAIVDIYGTYVALDND------EDYFPGNLGFDPMGFYPDDSDPKGQKAMQLAEIKHGRTAMMAFAFY 224

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BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Match: A0A7S3V7A3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7A3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.280e-28
Identity = 78/200 (39.00%), Postives = 100/200 (50.00%), Query Frame = 0

Query:   13 DATAEPTSGGKSRAVPFLPRPKALDGSMVGDVGFDPLGLA-TPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTGNGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAERLRSGPDGYRSGDLGLDPFGW------ADDEMRLREIKHGRLAMAAFAFHYAGVLLDKKGVV 205
            D T EP     S+++P++ RP AL G + GDVGFDPLG   T + L  YRE E+KH RLAM+A AGWP++ +    +   V    +   +  A      G       +G+VS VYW   LA+A A E   + K      LRS    Y  G+LG DP G           M+L EIKHGRLAM A         + K GVV
Sbjct:   65 DMTEEPVEPDMSQSMPYMARPLALTGELAGDVGFDPLGFVQTEEELMNYRECEIKHSRLAMLAAAGWPISELFDKKIAAAVNMPALVDASDRAPSTLNGG-------LGQVSPVYWIGVLAVAGAIEFYGISK------LRSNDPEYFPGNLGFDPLGVYPKGAVEQKNMQLAEIKHGRLAMIAIFAFAVQEFVTKAGVV 251

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig915.20561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5Q8_ECTSI	1.070e-142	78.04	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A835ZHI1_9STRA	4.630e-104	64.17	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0M0K4A5_9EUKA	3.640e-60	49.60	Protein fucoxanthin chlorophyll a c protein n=1 Ta...	[more]
A0A7S0L6L5_9EUKA	2.640e-55	43.66	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]
R1D3G8_EMIHU	2.700e-49	42.97	Uncharacterized protein n=2 Tax=Emiliania huxleyi ...	[more]
R1CT78_EMIHU	1.480e-31	52.94	Uncharacterized protein n=1 Tax=Emiliania huxleyi ...	[more]
B7G4U8_PHATC	1.910e-30	40.80	Protein fucoxanthin chlorophyll a/c protein n=2 Ta...	[more]
K0T6G6_THAOC	3.680e-30	38.57	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A7S3Q9Z2_9STRA	2.110e-28	41.53	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S3V7A3_9STRA	4.280e-28	39.00	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 33..192 e-value: 3.7E-29 score: 102.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 27..212 e-value: 5.4E-37 score: 129.3
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 24..203
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 24..203
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 70..92
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 124..143
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..69
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 93..123
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 144..261
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 23..205
None	No IPR available	TMHMM	TMhelix		coord: 124..143
None	No IPR available	TMHMM	TMhelix		coord: 70..92

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig915	contig	F-serratus_M_contig915:219136..224856 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig915.20561.1	mRNA_F-serratus_M_contig915.20561.1	Fucus serratus male	mRNA	F-serratus_M_contig915 218399..224875 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig915.20561.1 ID=prot_F-serratus_M_contig915.20561.1|Name=mRNA_F-serratus_M_contig915.20561.1|organism=Fucus serratus male|type=polypeptide|length=262bp
MNKAPPIMSTRVDATAEPTSGGKSRAVPFLPRPKALDGSMVGDVGFDPLG
LATPDNLDRYREAELKHGRLAMVALAGWPVASIILALLTGLVPPETVCTG
NGCAIDEPFSGSALPLEAIGRVSFVYWGSALALAVAAELGSLWKRSDAER
LRSGPDGYRSGDLGLDPFGWADDEMRLREIKHGRLAMAAFAFHYAGVLLD
KKGVVVGHQLWGEVCVINLKWGANPLPPPICYPRPEAALDTTLSWEIMWR
VLTGFFKEPYY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln