prot_F-serratus_M_contig736.18591.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig736.18591.1
Unique Name	prot_F-serratus_M_contig736.18591.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	213

Homology

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 7.800e-100
Identity = 154/211 (72.99%), Postives = 171/211 (81.04%), Query Frame = 0

Query:    1 MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 211
            MKT FA  ALAM   T AFV   A +A      + SS        SMEFAGGL GADGPEPNSKNFDP G S+ARPEN+LFFRE+EIKHGRIAMLAI GLI PEF+R+PG+I+Q+VSVLDAHN MVEKGPMWQLLFWISL EIIL PTVIDMDKKDREPGDF+LDP  LCK PEK E+YK++ELK+GRLAM AVSGALTQMA+ GHG+PFL
Sbjct:    1 MKTAFA--ALAMCGTTSAFVTPNAVKALAPSTRASSSL-------SMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQDVSVLDAHNVMVEKGPMWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGYPFL 202

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA)

HSP 1 Score: 265 bits (677), Expect = 2.680e-87
Identity = 124/177 (70.06%), Postives = 150/177 (84.75%), Query Frame = 0

Query:   38 KAAVRATP--SMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 212
            + AVR++   SMEFAGGLLGADGPEP +KNFDPLGL++  P+ +LF+RE+E+KHGRIAMLA++G++VP F+RLPGDI+Q VSV++AHNAMVEKGPM QLLFW+SL EII  P   +M  KDREPGDFSLDP G CKDPEK +RY++SELKNGRLAM A SG +TQ  LTGHGFP+LY
Sbjct:   31 RTAVRSSSALSMEFAGGLLGADGPEPTTKNFDPLGLAEKNPDAVLFYREAELKHGRIAMLAVLGMVVPNFVRLPGDIYQGVSVVEAHNAMVEKGPMVQLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHGFPYLY 207

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA)

HSP 1 Score: 246 bits (629), Expect = 4.800e-80
Identity = 129/212 (60.85%), Postives = 162/212 (76.42%), Query Frame = 0

Query:    1 MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 212
            MK V A S LA+A+   AFVA P++ A        S+K+A+    SMEFAGGL+GADGPEP +KNFDPLGL  A   ++LF+RE+E+KH R+AMLA++G++VP F+RLPGDIFQ V+V+DAHN MVEKGPM  +LFW+SL E++  P   +M +KDREPGDF LDP G CKDPEK +RY++SELKNGRLAM A SG +TQ  LTGH FP+LY
Sbjct:    1 MKAVAACS-LALAAGASAFVA-PSSFAGSQLARVTSAKSAL----SMEFAGGLIGADGPEPTTKNFDPLGL--AEKGDVLFYREAELKHCRLAMLAVVGMVVPNFVRLPGDIFQGVNVVDAHNLMVEKGPMVMVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHDFPYLY 204

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7R9U7U0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.390e-76
Identity = 114/166 (68.67%), Postives = 135/166 (81.33%), Query Frame = 0

Query:   47 MEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 212
            M+FAGGL+G DGPEP SKNFDPLGL++  PE I +FRE+EIKHGRI MLA +G+IVPEF RLPGDIFQ V+V+DAHN MV KGPM+ LLFWISL EII  PT+  +D+  REPGDF+ DP  L K+P+K +RY ++ELKNGRLAM A SG +TQ ALT HGFPFLY
Sbjct:   33 MDFAGGLIGGDGPEPFSKNFDPLGLAEKSPELIPYFREAEIKHGRICMLATLGMIVPEFARLPGDIFQKVNVVDAHNEMVSKGPMYMLLFWISLWEIISLPTIKQLDE-GREPGDFAFDPLSLGKNPDKMKRYALAELKNGRLAMLAFSGMITQAALTNHGFPFLY 197

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7S1XSJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSJ2_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.750e-67
Identity = 103/165 (62.42%), Postives = 127/165 (76.97%), Query Frame = 0

Query:   48 EFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 212
            EFAGGLLG DGPEPNS+ FDPLGL+   P  I +FRE+EIKHGRI MLA +G+IVPEF+RLPGDIFQ V  + AH+AMV KGPM+ LL WI + E++  PT+  +D+  R PGDF+ DP  L K+PEK +RY ++ELKNGRLAM   SG +TQ ALT +GFP+LY
Sbjct:  104 EFAGGLLGGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPYLY 267

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC)

HSP 1 Score: 204 bits (519), Expect = 2.720e-63
Identity = 109/202 (53.96%), Postives = 144/202 (71.29%), Query Frame = 0

Query:    9 ALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPF 210
            AL + S + AFV  P+A A+L     +  ++ +RA  +++    ++G DGPEP S+NFDPLGL++  P+ + FFRE+EIKHGRIAMLA++G++VP F  LPG   + +SVL AH+  VE G M QLLFW+SL EI+   TV+DMD+KDREPGDFS+DPFG  + PE+A   +  ELKNGRLAM A SG +TQ ALTG  FPF
Sbjct:   13 ALCLLSSSLAFV--PSAPAALRSRQQQPKRSVMRAQATLDD---MVGGDGPEPFSRNFDPLGLAEQFPQYLTFFREAEIKHGRIAMLAVLGMVVPSFWTLPGR--EGISVLAAHDKFVENGVMGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRLAMLAFSGMITQAALTGKNFPF 207

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7S1U797_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U797_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.950e-63
Identity = 96/158 (60.76%), Postives = 120/158 (75.95%), Query Frame = 0

Query:   55 GADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 212
            G DGPEPNS+ FDPLGL+   P  I +FRE+EIKHGRI MLA +G+IVPEF+RLPGDIFQ V  + AH+AMV KGPM+ LL WI + E++  PT+  +D+  R PGDF+ DP  L K+PEK +RY ++ELKNGRLAM   SG +TQ ALT +GFP+LY
Sbjct:   31 GGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPYLY 187

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7R9WPE2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPE2_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.310e-50
Identity = 89/187 (47.59%), Postives = 127/187 (67.91%), Query Frame = 0

Query:   37 SKAAVRATPSM-EFAGGLLGADGPEP-------NSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSV---LDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKA-ERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 211
            S++A +A  S+ EFA GL+G +GPEP       +S N+DP G ++  PE + +FRE+E+KHGR AMLA +G++VPEF+R+PG+ F   S+   +DAH+A+ +   M Q+  WIS +E    P + +M+  DR+PGD+S DP G   + E A ER K+ ELKNGRLAM A+ G +TQ  +TGHGFP+L
Sbjct:   21 SQSAPKAVTSLNEFANGLVGGEGPEPIPFSSQGSSVNWDPCGFTERAPEWVPWFREAELKHGRAAMLATVGIVVPEFVRIPGEQFSFESIPNIIDAHDALPDS--MIQIFAWISFIEACTFPALANMNNYDRQPGDYSFDPLGFFPEDEAAQERIKLVELKNGRLAMIAIGGMVTQATMTGHGFPYL 205

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A6U3XI59_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XI59_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.270e-50
Identity = 100/218 (45.87%), Postives = 139/218 (63.76%), Query Frame = 0

Query:    1 MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEP---NSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSV---LDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCK-DPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 211
            MKT FAT  LA+A+   AF  +P         N++S       T   EFA GL+G +GPEP    SKNFDP G S+  PE + +FRE+E+KHGR AMLA +G++VPEF+R+PG  F   +V   LDAH+A+++   M Q+L +IS  E +    + +M++ DR+PGD+  DP GL   DPEK +  ++ ELKNGRLAM A+ G +   ++TGHGFP+L
Sbjct:    1 MKTAFAT--LALAASASAFAPAPV--------NTKS-------TQLSEFANGLVGGEGPEPMFSGSKNFDPAGFSERAPEWMNWFREAELKHGRQAMLATVGIVVPEFVRIPGPQFSFEAVPNVLDAHDALIDSS-MKQILLFISFAEAMSMAALSNMNEYDRQPGDWGFDPIGLYPTDPEKRKAIQLKELKNGRLAMVAIGGMVAGASITGHGFPYL 200

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BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7S1BXH5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXH5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.450e-48
Identity = 86/175 (49.14%), Postives = 117/175 (66.86%), Query Frame = 0

Query:   46 SMEFAGGLLGADGPEP-----NSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVS---VLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLC-KDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 211
            S  F  G +G +GPEP      S N+DP G ++  PE + +FRE+E+KHGR AMLA +G IVP+F+R+PG+ F   S   V+DAH+A+ +   M Q+  WIS++E +  P + +MD  DREPGDFS DP G+   DP K   YK++ELKNGRLAM A+ G +T  A+TG GFP+L
Sbjct:   66 SSAFCRGYVGGEGPEPMLMGGTSINWDPAGFTQRAPEWVPWFREAELKHGRAAMLATVGFIVPQFMRIPGEQFSFESIPNVIDAHDALPDS--MGQIFLWISVIEAMTFPALANMDGYDREPGDFSFDPLGIYPSDPVKQNEYKLAELKNGRLAMIAIGGMVTGAAITGTGFPYL 238

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQJ9_ECTSI	7.800e-100	72.99	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835ZCB2_9STRA	2.680e-87	70.06	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A835Z019_9STRA	4.800e-80	60.85	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7R9U7U0_9STRA	3.390e-76	68.67	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S1XSJ2_9STRA	1.750e-67	62.42	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A0G4H306_VITBC	2.720e-63	53.96	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A7S1U797_9STRA	3.950e-63	60.76	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7R9WPE2_9STRA	5.310e-50	47.59	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]
A0A6U3XI59_9STRA	6.270e-50	45.87	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S1BXH5_9STRA	6.450e-48	49.14	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 61..201 e-value: 5.4E-34 score: 118.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 54..210 e-value: 3.7E-37 score: 129.9
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 11..205
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 151..188
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 92..110
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 111..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..91
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 189..211
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 130..150
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 212..212
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 44..208
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 11..205

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig736	contig	F-serratus_M_contig736:111284..115264 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig736.18591.1	mRNA_F-serratus_M_contig736.18591.1	Fucus serratus male	mRNA	F-serratus_M_contig736 111142..116009 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig736.18591.1 ID=prot_F-serratus_M_contig736.18591.1|Name=mRNA_F-serratus_M_contig736.18591.1|organism=Fucus serratus male|type=polypeptide|length=213bp
MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFA
GGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGL
IVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVI
DMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQ
MALTGHGFPFLY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln