mRNA_F-serratus_M_contig736.18591.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI) HSP 1 Score: 297 bits (761), Expect = 1.020e-95 Identity = 154/211 (72.99%), Postives = 171/211 (81.04%), Query Frame = 2
Query: 143 MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 775
MKT FA ALAM T AFV A +A + SS SMEFAGGL GADGPEPNSKNFDP G S+ARPEN+LFFRE+EIKHGRIAMLAI GLI PEF+R+PG+I+Q+VSVLDAHN MVEKGPMWQLLFWISL EIIL PTVIDMDKKDREPGDF+LDP LCK PEK E+YK++ELK+GRLAM AVSGALTQMA+ GHG+PFL
Sbjct: 1 MKTAFA--ALAMCGTTSAFVTPNAVKALAPSTRASSSL-------SMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQDVSVLDAHNVMVEKGPMWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGYPFL 202
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA) HSP 1 Score: 265 bits (677), Expect = 4.890e-83 Identity = 124/177 (70.06%), Postives = 150/177 (84.75%), Query Frame = 2
Query: 254 KAAVRATP--SMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 778
+ AVR++ SMEFAGGLLGADGPEP +KNFDPLGL++ P+ +LF+RE+E+KHGRIAMLA++G++VP F+RLPGDI+Q VSV++AHNAMVEKGPM QLLFW+SL EII P +M KDREPGDFSLDP G CKDPEK +RY++SELKNGRLAM A SG +TQ LTGHGFP+LY
Sbjct: 31 RTAVRSSSALSMEFAGGLLGADGPEPTTKNFDPLGLAEKNPDAVLFYREAELKHGRIAMLAVLGMVVPNFVRLPGDIYQGVSVVEAHNAMVEKGPMVQLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHGFPYLY 207
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA) HSP 1 Score: 248 bits (633), Expect = 1.710e-76 Identity = 129/212 (60.85%), Postives = 162/212 (76.42%), Query Frame = 2
Query: 143 MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 778
MK V A S LA+A+ AFVA P++ A S+K+A+ SMEFAGGL+GADGPEP +KNFDPLGL A ++LF+RE+E+KH R+AMLA++G++VP F+RLPGDIFQ V+V+DAHN MVEKGPM +LFW+SL E++ P +M +KDREPGDF LDP G CKDPEK +RY++SELKNGRLAM A SG +TQ LTGH FP+LY
Sbjct: 1 MKAVAACS-LALAAGASAFVA-PSSFAGSQLARVTSAKSAL----SMEFAGGLIGADGPEPTTKNFDPLGL--AEKGDVLFYREAELKHCRLAMLAVVGMVVPNFVRLPGDIFQGVNVVDAHNLMVEKGPMVMVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHDFPYLY 204
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7R9U7U0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U0_9STRA) HSP 1 Score: 236 bits (603), Expect = 4.120e-72 Identity = 114/166 (68.67%), Postives = 135/166 (81.33%), Query Frame = 2
Query: 281 MEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 778
M+FAGGL+G DGPEP SKNFDPLGL++ PE I +FRE+EIKHGRI MLA +G+IVPEF RLPGDIFQ V+V+DAHN MV KGPM+ LLFWISL EII PT+ +D+ REPGDF+ DP L K+P+K +RY ++ELKNGRLAM A SG +TQ ALT HGFPFLY
Sbjct: 33 MDFAGGLIGGDGPEPFSKNFDPLGLAEKSPELIPYFREAEIKHGRICMLATLGMIVPEFARLPGDIFQKVNVVDAHNEMVSKGPMYMLLFWISLWEIISLPTIKQLDE-GREPGDFAFDPLSLGKNPDKMKRYALAELKNGRLAMLAFSGMITQAALTNHGFPFLY 197
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7S1XSJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSJ2_9STRA) HSP 1 Score: 217 bits (552), Expect = 1.500e-63 Identity = 103/165 (62.42%), Postives = 127/165 (76.97%), Query Frame = 2
Query: 284 EFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 778
EFAGGLLG DGPEPNS+ FDPLGL+ P I +FRE+EIKHGRI MLA +G+IVPEF+RLPGDIFQ V + AH+AMV KGPM+ LL WI + E++ PT+ +D+ R PGDF+ DP L K+PEK +RY ++ELKNGRLAM SG +TQ ALT +GFP+LY
Sbjct: 104 EFAGGLLGGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPYLY 267
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC) HSP 1 Score: 204 bits (520), Expect = 1.290e-59 Identity = 109/202 (53.96%), Postives = 144/202 (71.29%), Query Frame = 2
Query: 167 ALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPF 772
AL + S + AFV P+A A+L + ++ +RA +++ ++G DGPEP S+NFDPLGL++ P+ + FFRE+EIKHGRIAMLA++G++VP F LPG + +SVL AH+ VE G M QLLFW+SL EI+ TV+DMD+KDREPGDFS+DPFG + PE+A + ELKNGRLAM A SG +TQ ALTG FPF
Sbjct: 13 ALCLLSSSLAFV--PSAPAALRSRQQQPKRSVMRAQATLDD---MVGGDGPEPFSRNFDPLGLAEQFPQYLTFFREAEIKHGRIAMLAVLGMVVPSFWTLPGR--EGISVLAAHDKFVENGVMGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRLAMLAFSGMITQAALTGKNFPF 207
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7S1U797_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U797_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.560e-59 Identity = 96/158 (60.76%), Postives = 120/158 (75.95%), Query Frame = 2
Query: 305 GADGPEPNSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSVLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFLY 778
G DGPEPNS+ FDPLGL+ P I +FRE+EIKHGRI MLA +G+IVPEF+RLPGDIFQ V + AH+AMV KGPM+ LL WI + E++ PT+ +D+ R PGDF+ DP L K+PEK +RY ++ELKNGRLAM SG +TQ ALT +GFP+LY
Sbjct: 31 GGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPYLY 187
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A6U3XI59_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XI59_9STRA) HSP 1 Score: 171 bits (433), Expect = 6.280e-47 Identity = 100/218 (45.87%), Postives = 139/218 (63.76%), Query Frame = 2
Query: 143 MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAGGLLGADGPEP---NSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSV---LDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCK-DPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 775
MKT FAT LA+A+ AF +P N++S T EFA GL+G +GPEP SKNFDP G S+ PE + +FRE+E+KHGR AMLA +G++VPEF+R+PG F +V LDAH+A+++ M Q+L +IS E + + +M++ DR+PGD+ DP GL DPEK + ++ ELKNGRLAM A+ G + ++TGHGFP+L
Sbjct: 1 MKTAFAT--LALAASASAFAPAPV--------NTKS-------TQLSEFANGLVGGEGPEPMFSGSKNFDPAGFSERAPEWMNWFREAELKHGRQAMLATVGIVVPEFVRIPGPQFSFEAVPNVLDAHDALIDSS-MKQILLFISFAEAMSMAALSNMNEYDRQPGDWGFDPIGLYPTDPEKRKAIQLKELKNGRLAMVAIGGMVAGASITGHGFPYL 200
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7R9WPE2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPE2_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.480e-46 Identity = 89/187 (47.59%), Postives = 127/187 (67.91%), Query Frame = 2
Query: 251 SKAAVRATPSM-EFAGGLLGADGPEP-------NSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVSV---LDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLCKDPEKA-ERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 775
S++A +A S+ EFA GL+G +GPEP +S N+DP G ++ PE + +FRE+E+KHGR AMLA +G++VPEF+R+PG+ F S+ +DAH+A+ + M Q+ WIS +E P + +M+ DR+PGD+S DP G + E A ER K+ ELKNGRLAM A+ G +TQ +TGHGFP+L
Sbjct: 21 SQSAPKAVTSLNEFANGLVGGEGPEPIPFSSQGSSVNWDPCGFTERAPEWVPWFREAELKHGRAAMLATVGIVVPEFVRIPGEQFSFESIPNIIDAHDALPDS--MIQIFAWISFIEACTFPALANMNNYDRQPGDYSFDPLGFFPEDEAAQERIKLVELKNGRLAMIAIGGMVTQATMTGHGFPYL 205
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Match: A0A7S1BXH5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXH5_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.570e-44 Identity = 86/175 (49.14%), Postives = 117/175 (66.86%), Query Frame = 2
Query: 278 SMEFAGGLLGADGPEP-----NSKNFDPLGLSKARPENILFFRESEIKHGRIAMLAIIGLIVPEFIRLPGDIFQNVS---VLDAHNAMVEKGPMWQLLFWISLVEIILTPTVIDMDKKDREPGDFSLDPFGLC-KDPEKAERYKISELKNGRLAMFAVSGALTQMALTGHGFPFL 775
S F G +G +GPEP S N+DP G ++ PE + +FRE+E+KHGR AMLA +G IVP+F+R+PG+ F S V+DAH+A+ + M Q+ WIS++E + P + +MD DREPGDFS DP G+ DP K YK++ELKNGRLAM A+ G +T A+TG GFP+L
Sbjct: 66 SSAFCRGYVGGEGPEPMLMGGTSINWDPAGFTQRAPEWVPWFREAELKHGRAAMLATVGFIVPQFMRIPGEQFSFESIPNVIDAHDALPDS--MGQIFLWISVIEAMTFPALANMDGYDREPGDFSFDPLGIYPSDPVKQNEYKLAELKNGRLAMIAIGGMVTGAAITGTGFPYL 238 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig736.18591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig736.18591.1 >prot_F-serratus_M_contig736.18591.1 ID=prot_F-serratus_M_contig736.18591.1|Name=mRNA_F-serratus_M_contig736.18591.1|organism=Fucus serratus male|type=polypeptide|length=213bp MKTVFATSALAMASYTDAFVASPAARASLSHGNSRSSKAAVRATPSMEFAback to top mRNA from alignment at F-serratus_M_contig736:111142..116009+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig736.18591.1 ID=mRNA_F-serratus_M_contig736.18591.1|Name=mRNA_F-serratus_M_contig736.18591.1|organism=Fucus serratus male|type=mRNA|length=4868bp|location=Sequence derived from alignment at F-serratus_M_contig736:111142..116009+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig736:111142..116009+ >mRNA_F-serratus_M_contig736.18591.1 ID=mRNA_F-serratus_M_contig736.18591.1|Name=mRNA_F-serratus_M_contig736.18591.1|organism=Fucus serratus male|type=CDS|length=1278bp|location=Sequence derived from alignment at F-serratus_M_contig736:111142..116009+ (Fucus serratus male)back to top |