prot_F-serratus_M_contig62.17016.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig62.17016.1
Unique Name	prot_F-serratus_M_contig62.17016.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	154

Homology

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BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.400e-26
Identity = 69/126 (54.76%), Postives = 91/126 (72.22%), Query Frame = 0

Query:   34 PETPPPLKGVNRRASLVN------DNYEEPPDEIVQELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVRRSIGPIATGTNIILMVSFVSALILSFPFIRFVARLFAYLVTTRASSLLYRGNR 153
            P+TPPPL+ + RR SLVN      D+ +EP   I  ELMIGEI+++ + EE+ LVR+A+V+I+LS+  AV+VR   G +    NI  +V FVS L+LSFP IRF ARLFA+++TTRAS LLYRGNR
Sbjct:  292 PDTPPPLRRMQRRGSLVNREVPPEDDLKEP---IEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVREFAGELDKDVNIREVVFFVSLLLLSFPVIRFTARLFAFVITTRASGLLYRGNR 414

[Close]

BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.590e-18
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 0

Query:   19 GHVPGILSGMGGLVG---PETPPPLKGVNRRASLVN--DNYEEPPDEIVQ-ELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVRRSIGPIATGTNIILMVSFVSALILSFPFIRFVARLFAYLVTTRASSLLYRGN 152
            GHV   +S    L G   P TPP L    +R +LV+  +  EE  D   + +LMIGEI+++ + +E++L RKAL++I+ S+ +A + R   G +    NI+ +V F S + LS+P IRF  RLFAY +TTRAS+LLYRGN
Sbjct:  243 GHVSDRVSLPNALDGVRIPATPPQLDATEQRPNLVHVRETKEERIDTRSETDLMIGEIQSIQIADEIVLARKALMLILGSLVVATLFREFAGRLDKDVNIVNVVGFASTIFLSYPMIRFTIRLFAYFLTTRASALLYRGN 382

[Close]

BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.260e-9
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 0

Query:   34 PETPPPLKGVNRRASLVNDNY---EEPPDEIVQELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVRRSIG 104
            P+TPPPL+ + RR SLVN      +EP + I  ELMIGEI+++ + EE+ LVR+A+V+I+LS+  AV+VR   G
Sbjct:  291 PDTPPPLRRMQRRGSLVNREVPQEDEPKEPIEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVRAFAG 364

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JDS1_9PHAE	5.400e-26	54.76	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A6H5JBC1_9PHAE	8.590e-18	43.57	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FX37_ECTSI	8.260e-9	50.00	Small Conductance Mechanosensitive Ion channel n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 101..111
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..100
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 112..133
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 134..153
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..80
None	No IPR available	TMHMM	TMhelix		coord: 111..133
None	No IPR available	TMHMM	TMhelix		coord: 79..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig62	contig	F-serratus_M_contig62:407792..409376 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig62.17016.1	mRNA_F-serratus_M_contig62.17016.1	Fucus serratus male	mRNA	F-serratus_M_contig62 407792..409376 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig62.17016.1 ID=prot_F-serratus_M_contig62.17016.1|Name=mRNA_F-serratus_M_contig62.17016.1|organism=Fucus serratus male|type=polypeptide|length=154bp
APGGHTSGGQSSARHASGGHVPGILSGMGGLVGPETPPPLKGVNRRASLV
NDNYEEPPDEIVQELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVR
RSIGPIATGTNIILMVSFVSALILSFPFIRFVARLFAYLVTTRASSLLYR
GNR*