mRNA_F-serratus_M_contig62.17016.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17016.1
Unique NamemRNA_F-serratus_M_contig62.17016.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.400e-26
Identity = 69/126 (54.76%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:  100 PETPPPLKGVNRRASLVN------DNYEEPPDEIVQELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVRRSIGPIATGTNIILMVSFVSALILSFPFIRFVARLFAYLVTTRASSLLYRGNR 459
            P+TPPPL+ + RR SLVN      D+ +EP   I  ELMIGEI+++ + EE+ LVR+A+V+I+LS+  AV+VR   G +    NI  +V FVS L+LSFP IRF ARLFA+++TTRAS LLYRGNR
Sbjct:  292 PDTPPPLRRMQRRGSLVNREVPPEDDLKEP---IEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVREFAGELDKDVNIREVVFFVSLLLLSFPVIRFTARLFAFVITTRASGLLYRGNR 414
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BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.590e-18
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 1 
Query:   55 GHVPGILSGMGGLVG---PETPPPLKGVNRRASLVN--DNYEEPPDEIVQ-ELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVRRSIGPIATGTNIILMVSFVSALILSFPFIRFVARLFAYLVTTRASSLLYRGN 456
            GHV   +S    L G   P TPP L    +R +LV+  +  EE  D   + +LMIGEI+++ + +E++L RKAL++I+ S+ +A + R   G +    NI+ +V F S + LS+P IRF  RLFAY +TTRAS+LLYRGN
Sbjct:  243 GHVSDRVSLPNALDGVRIPATPPQLDATEQRPNLVHVRETKEERIDTRSETDLMIGEIQSIQIADEIVLARKALMLILGSLVVATLFREFAGRLDKDVNIVNVVGFASTIFLSYPMIRFTIRLFAYFLTTRASALLYRGN 382
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BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.260e-9
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  100 PETPPPLKGVNRRASLVNDNY---EEPPDEIVQELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVRRSIG 312
            P+TPPPL+ + RR SLVN      +EP + I  ELMIGEI+++ + EE+ LVR+A+V+I+LS+  AV+VR   G
Sbjct:  291 PDTPPPLRRMQRRGSLVNREVPQEDEPKEPIEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVRAFAG 364
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDS1_9PHAE5.400e-2654.76EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JBC1_9PHAE8.590e-1843.57EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FX37_ECTSI8.260e-950.00Small Conductance Mechanosensitive Ion channel n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:407792..409376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons3
Model size463
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17016.1prot_F-serratus_M_contig62.17016.1Fucus serratus malepolypeptideF-serratus_M_contig62 407792..409376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931920.0185826-CDS-F-serratus_M_contig62:407791..4080041622931920.0185826-CDS-F-serratus_M_contig62:407791..408004Fucus serratus maleCDSF-serratus_M_contig62 407792..408004 +
1690964057.978818-CDS-F-serratus_M_contig62:407791..4080041690964057.978818-CDS-F-serratus_M_contig62:407791..408004Fucus serratus maleCDSF-serratus_M_contig62 407792..408004 +
1622931920.0462012-CDS-F-serratus_M_contig62:408396..4085001622931920.0462012-CDS-F-serratus_M_contig62:408396..408500Fucus serratus maleCDSF-serratus_M_contig62 408397..408500 +
1690964057.990798-CDS-F-serratus_M_contig62:408396..4085001690964057.990798-CDS-F-serratus_M_contig62:408396..408500Fucus serratus maleCDSF-serratus_M_contig62 408397..408500 +
1622931920.076677-CDS-F-serratus_M_contig62:409231..4093761622931920.076677-CDS-F-serratus_M_contig62:409231..409376Fucus serratus maleCDSF-serratus_M_contig62 409232..409376 +
1690964058.000616-CDS-F-serratus_M_contig62:409231..4093761690964058.000616-CDS-F-serratus_M_contig62:409231..409376Fucus serratus maleCDSF-serratus_M_contig62 409232..409376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17016.1

>prot_F-serratus_M_contig62.17016.1 ID=prot_F-serratus_M_contig62.17016.1|Name=mRNA_F-serratus_M_contig62.17016.1|organism=Fucus serratus male|type=polypeptide|length=154bp
APGGHTSGGQSSARHASGGHVPGILSGMGGLVGPETPPPLKGVNRRASLV
NDNYEEPPDEIVQELMIGEIKNVSMKEELILVRKALVIIVLSVTIAVVVR
RSIGPIATGTNIILMVSFVSALILSFPFIRFVARLFAYLVTTRASSLLYR
GNR*
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mRNA from alignment at F-serratus_M_contig62:407792..409376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17016.1 ID=mRNA_F-serratus_M_contig62.17016.1|Name=mRNA_F-serratus_M_contig62.17016.1|organism=Fucus serratus male|type=mRNA|length=1585bp|location=Sequence derived from alignment at F-serratus_M_contig62:407792..409376+ (Fucus serratus male)
GCACCTGGAGGGCACACGTCTGGGGGGCAATCGTCTGCGAGGCACGCATC
GGGGGGGCACGTGCCTGGGATCCTGTCGGGAATGGGGGGATTGGTTGGCC
CGGAGACGCCGCCGCCGCTGAAGGGCGTCAACCGTCGCGCTAGCCTGGTG
AACGATAATTATGAAGAGCCGCCGGACGAAATCGTGCAGGAGCTCATGAT
CGGCGAGATCAAGGTACTTCAAGCGTAAAGGTCGTCAAAACTCCTGTCTC
GTTTTCTGTGAATCGTTTCCGCTTGACCGCGTCGTAAAGGTTCGGCGTTT
CGAGTCTTCTTATGGTTTTGTCATCCCGATGAATCCAAGAGAGTAAAGAG
TTGGCGATCTCCCCCTCTCTCGTCTTTCCGGGGGGCtGGCTGGCTGGCTG
GCTGGCTGTCATCGGTGATCGGTGCTGCTGTGTTGTACTTTATATTGATC
TGCGCTGCACTTTAAACGTACTAAGCCGCTGTGTATCATGACCTCGTTTT
ACAGCAAGCACAAAGGCCGTGACTCTGCCGCGGTGGTTACTTCCGAGACT
GCAGCACCTTCCATTCCCTCACTACCCCTCACCCCACCGCTCGTTTTCGC
TTCAGAATGTGTCCATGAAAGAAGAGTTGATACTGGTGAGGAAGGCGTTG
GTGATCATCGTGCTTAGCGTCACGATCGCGGTGGTGGTGCGCCGATCTAT
TGGGCCGATGTGAGCACGTTTCCGCTGCTGTTGTTGCTGCTGCTGCTGCT
ACTGTGGCGTTGAGGGGGAGATGGAGGAGCGTTTATTTTCTCGCTTGATA
TGGCTATGCTGTTATTTTTGGTCTAATTTGGTTACTTCATTGGTCGAAGA
CTTTTTTTTCCATGCGCAACCTTTCATTGCTTCGTCGCTTTTGCCGAAAC
GGTATTCTGTTCGAAAACAAGCGATCGTTCGTCTGTCTCCTGCCACCTGG
ATATAATGCGACGCTCACCCGTCCATAAGCCTCTCATTCCAACTCACGCC
ACCCCAGAACCGTAGTCAGCTCGTCGGATGTCTGGAGGCGTGTGCTCTGG
CGGTATGCTCTCGCGTTTTTCTCCTCCCCACGCGCTCTGGCTGACAAGGC
CGGGAATTTTAGCTTTATGCCTAGCCGATTGACATTATTGAATGTACAGA
CGTCCCTCCATCAATTTTGTATCGGAAGACACCGTAAATCAACCCCCGAA
ACACTATAATTACTTTGATAAGAGCGGACTTTGGGGGGGGGGGGGGGTCG
GAAGTATCCCCCCTCCCCTTCCCCCGTTCGTGCGCCCCCGTCGAGTACCG
TGTTACGTGCTGCCCTTGAAACCACCCCGTTTAGCTGGTATCGTCAGTAT
TCTGAATGCGATTTCGCGGCCTTTTGTGTGTATCTTCCGCCGGTCGCCTC
CACGCGCCTGTCTTATCTTTCTCTCGGTCTGGTTGAACAGAGCCACGGGC
ACAAACATCATTCTCATGGTGTCTTTCGTGTCAGCCTTGATTCTTTCCTT
CCCGTTCATCCGCTTCGTGGCGCGACTGTTTGCCTACTTGGTGACGACCC
GCGCTTCCAGCCTTCTTTACCGTGGGAACCGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:407792..409376+

>mRNA_F-serratus_M_contig62.17016.1 ID=mRNA_F-serratus_M_contig62.17016.1|Name=mRNA_F-serratus_M_contig62.17016.1|organism=Fucus serratus male|type=CDS|length=924bp|location=Sequence derived from alignment at F-serratus_M_contig62:407792..409376+ (Fucus serratus male)
GCACCTGGAGGGCACACGTCTGGGGGGCAATCGTCTGCGAGGCACGCATC
GGGGGGGCACGTGCCTGGGATCCTGTCGGGAATGGGGGGATTGGTTGGCC
CGGAGACGCCGCCGCCGCTGAAGGGCGTCAACCGTCGCGCTAGCCTGGTG
AACGATAATTATGAAGAGCCGCCGGACGAAATCGTGCAGGAGCTCATGAT
CGGCGAGATCAAGGCACCTGGAGGGCACACGTCTGGGGGGCAATCGTCTG
CGAGGCACGCATCGGGGGGGCACGTGCCTGGGATCCTGTCGGGAATGGGG
GGATTGGTTGGCCCGGAGACGCCGCCGCCGCTGAAGGGCGTCAACCGTCG
CGCTAGCCTGGTGAACGATAATTATGAAGAGCCGCCGGACGAAATCGTGC
AGGAGCTCATGATCGGCGAGATCAAGAATGTGTCCATGAAAGAAGAGTTG
ATACTGGTGAGGAAGGCGTTGGTGATCATCGTGCTTAGCGTCACGATCGC
GGTGGTGGTGCGCCGATCTATTGGGCCGATAATGTGTCCATGAAAGAAGA
GTTGATACTGGTGAGGAAGGCGTTGGTGATCATCGTGCTTAGCGTCACGA
TCGCGGTGGTGGTGCGCCGATCTATTGGGCCGATAGCCACGGGCACAAAC
ATCATTCTCATGGTGTCTTTCGTGTCAGCCTTGATTCTTTCCTTCCCGTT
CATCCGCTTCGTGGCGCGACTGTTTGCCTACTTGGTGACGACCCGCGCTT
CCAGCCTTCTTTACCGTGGGAACCGGTAAAGCCACGGGCACAAACATCAT
TCTCATGGTGTCTTTCGTGTCAGCCTTGATTCTTTCCTTCCCGTTCATCC
GCTTCGTGGCGCGACTGTTTGCCTACTTGGTGACGACCCGCGCTTCCAGC
CTTCTTTACCGTGGGAACCGGTAA
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