prot_F-serratus_M_contig62.17010.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig62.17010.1
Unique Nameprot_F-serratus_M_contig62.17010.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length214
Homology
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438BMD3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BMD3_VITVI)

HSP 1 Score: 155 bits (391), Expect = 8.900e-43
Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = 0
Query:    8 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAE 209
            L   F +KD+G+A Y +G  I R+R     K  Q  Y+E ++KRF++   K  K P   G    SKA  PQN +E+E+MK  PY   VG+LM+    TRPDIA  V  + R+  NPG  H KA  K+ +YL  TKD  +TY        +  + D+DF  C+D ++S +G + M+A GA+SW S  Q +TA+ T EA+YVA  E
Sbjct:    2 LSTHFDMKDLGEASYVLGIKILRDRANGVFKLSQRAYIEKILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYVACYE 203          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A2P4YNZ8_9STRA (Retrovirus-related pol Polyprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNZ8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 9.500e-43
Identity = 86/211 (40.76%), Postives = 132/211 (62.56%), Query Frame = 0
Query:    6 AELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGVPT--LSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKDV 214
            A + +KF++KD+G A + +G  I  + + + L   Q  Y E ++ +F ++  AK    S  P+  L+KADEPQN ++K  MK  PYR  VG+LM+ A  TRPDIA AV  ++R+ ENP   H  A +K+ +YL++TKD  ITY  +  G  + AY+D+D+    D RRSVSG +LM+    + W ST Q+  A  ++EA+Y+AL++ +K+V
Sbjct:   53 AGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTEPIINKFGLE-NAKPSLTSLDPSVHLTKADEPQNADDKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPDHRHWDAGIKVVRYLMKTKDAAITYDGR-MGTELTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCIKEV 261          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 162 bits (410), Expect = 1.590e-42
Identity = 87/208 (41.83%), Postives = 130/208 (62.50%), Query Frame = 0
Query:    8 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKD 213
            L ++F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR++++  K   +P  +GV TLS+ D P+ PEE+E M   PY  AVGA+M+T T TRPD+A A+   +R+  NPG  H K V  I +YL RTKD  + YGE      ++ YTD+ F +  D  +S+SG V  L  GA+SW S+ Q   A  T+EA+Y+A +E  K+
Sbjct:  527 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESELK--LKGYTDASFASDKDDSKSISGYVFTLNGGAVSWKSSKQATVADSTTEAEYIAASEAAKE 731          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438HF44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HF44_VITVI)

HSP 1 Score: 152 bits (385), Expect = 5.300e-42
Identity = 82/196 (41.84%), Postives = 115/196 (58.67%), Query Frame = 0
Query:   12 FKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYV 205
            F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRF++   K  K P   G    SKA  PQN +E+E+MK  PY   VG+LM+    TRPDIA  V  + R+  NPG  H KA  K+ +YL  TKD  +TY        +  + D+DF  C+D ++S +G + M+A GA+SW S  Q +TA+ T EA+YV
Sbjct:   76 FDMKDLGEAFYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYV 269          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438KM46_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KM46_VITVI)

HSP 1 Score: 152 bits (385), Expect = 6.990e-42
Identity = 83/200 (41.50%), Postives = 116/200 (58.00%), Query Frame = 0
Query:    8 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYV 205
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRF++   K  K P   G    SKA  PQN +E+E+MK  PY   VG+LM+    TRPDIA  V  + R+  NPG  H KA  K+ +YL  TKD  +TY   G    +  + D+DF  C+D ++S +G + M+A GA+SW S  Q +T + T EA+YV
Sbjct:    2 LSTHFDMKDLGEASYVLGITILRDRANGVLKLSQKAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTGLLDVV-GFCDADFVDCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTTSSTMEAEYV 199          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 160 bits (406), Expect = 7.350e-42
Identity = 86/208 (41.35%), Postives = 129/208 (62.02%), Query Frame = 0
Query:    8 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKD 213
            L ++F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR++++  K   +P  +GV TLS+ D P+ PEE+E M   PY  AVGA+M+T T TRPD+A A+   +R+  NPG  H K V  I +YL RTKD  + YGE      ++ YTD+ F +  D  +S+SG V  L  G +SW S+ Q   A  T+EA+Y+A +E  K+
Sbjct:  921 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESELK--LKGYTDASFASDKDDSKSISGYVFTLNGGTVSWKSSKQATVADSTTEAEYIAASEAAKE 1125          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A5BJG5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Vitis vinifera TaxID=29760 RepID=A5BJG5_VITVI)

HSP 1 Score: 153 bits (386), Expect = 1.610e-41
Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = 0
Query:    8 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAE 209
            L   F +KD G+A Y +G  I R+R    LK  Q +Y+E ++KRF++   K  K P   G    SKA  PQN +E+E+MK  PY   VG+LM+    T PDIA  V  + R+  NPG  H KA  K+ +YL  TKD  +TY        +  + D+DF  C+D ++S +G + M+A GA+SW S  Q +TA+ T EA+YVA  E
Sbjct:   52 LSTHFDMKDFGEASYVLGIKILRDRANGVLKLSQRVYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTCPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYVACYE 253          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.410e-41
Identity = 86/214 (40.19%), Postives = 126/214 (58.88%), Query Frame = 0
Query:    2 DRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQG-CGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKDV 214
            D+F  +L    ++K++GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G+  LS+ D      + E++  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++RT D GIT+      G  ME + D+D+ +    RRSVSG ++M   G ISW S  Q+     T+EA+YV+LA+V+K+V
Sbjct:   36 DQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEV 242          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: Q153Y5_SOLME (Polyprotein (Fragment) n=1 Tax=Solanum melongena TaxID=4111 RepID=Q153Y5_SOLME)

HSP 1 Score: 152 bits (384), Expect = 3.640e-41
Identity = 81/216 (37.50%), Postives = 132/216 (61.11%), Query Frame = 0
Query:    1 MDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGVPTLSKADE--PQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGE-QGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKD 213
            +DR  A+L ++F++KD+G+A+  +G  I+R+R+  +L   Q  Y++ +++RF +  ++K  +    P L  + +  P+  EE+E M   PY  AVG+LM+    TR DI+ AV  V+R+  +PG  H +AV  I +Y+  T D G+ + + +  G C+  Y DSD+   LD RRS +G +  LAKG +SW ST+Q   A  T+EA+Y+A+ E VK+
Sbjct:  100 IDRLKAQLSKEFEMKDLGEAKKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSSQLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITEAVKE 315          
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438D1W2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D1W2_VITVI)

HSP 1 Score: 152 bits (385), Expect = 1.320e-40
Identity = 83/204 (40.69%), Postives = 116/204 (56.86%), Query Frame = 0
Query:    8 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAE 209
            L   F +KD+G+A Y +G  I R+R    LK  Q  Y+E ++KRF++   K  K P   G    SKA  PQN +E+E+MK  PY   VG+LM+    TRPDIA  V  + R+  NPG  H KA  K+ +YL  TKD  +TY        +  + D+DF  C+D ++S +G + M+A G +SW S  Q +T + T EA+YVA  E
Sbjct:    2 LSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNNDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGVVSWKSVKQTLTTSSTMEAEYVACYE 203          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438BMD3_VITVI8.900e-4341.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P4YNZ8_9STRA9.500e-4340.76Retrovirus-related pol Polyprotein (Fragment) n=1 ... [more]
A0A438K5H3_VITVI1.590e-4241.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HF44_VITVI5.300e-4241.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KM46_VITVI6.990e-4241.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JH99_VITVI7.350e-4241.35Retrovirus-related Pol polyprotein from transposon... [more]
A5BJG5_VITVI1.610e-4141.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE3.410e-4140.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q153Y5_SOLME3.640e-4137.50Polyprotein (Fragment) n=1 Tax=Solanum melongena T... [more]
A0A438D1W2_VITVI1.320e-4040.69Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 88..212
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 88..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:15927..16568 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17010.1mRNA_F-serratus_M_contig62.17010.1Fucus serratus malemRNAF-serratus_M_contig62 15365..16568 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig62.17010.1 ID=prot_F-serratus_M_contig62.17010.1|Name=mRNA_F-serratus_M_contig62.17010.1|organism=Fucus serratus male|type=polypeptide|length=214bp
MDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVK
RFDVKKEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTA
TMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQG
CGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTS
EAKYVALAEVVKDV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like