mRNA_F-serratus_M_contig62.17010.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438BMD3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BMD3_VITVI) HSP 1 Score: 154 bits (390), Expect = 2.430e-40 Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = 2
Query: 584 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAE 1189
L F +KD+G+A Y +G I R+R K Q Y+E ++KRF++ K K P G SKA PQN +E+E+MK PY VG+LM+ TRPDIA V + R+ NPG H KA K+ +YL TKD +TY + + D+DF C+D ++S +G + M+A GA+SW S Q +TA+ T EA+YVA E
Sbjct: 2 LSTHFDMKDLGEASYVLGIKILRDRANGVFKLSQRAYIEKILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYVACYE 203
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A2P4YNZ8_9STRA (Retrovirus-related pol Polyprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNZ8_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.580e-40 Identity = 86/211 (40.76%), Postives = 132/211 (62.56%), Query Frame = 2
Query: 578 AELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGVPT--LSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKDV 1204
A + +KF++KD+G A + +G I + + + L Q Y E ++ +F ++ AK S P+ L+KADEPQN ++K MK PYR VG+LM+ A TRPDIA AV ++R+ ENP H A +K+ +YL++TKD ITY + G + AY+D+D+ D RRSVSG +LM+ + W ST Q+ A ++EA+Y+AL++ +K+V
Sbjct: 53 AGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTEPIINKFGLE-NAKPSLTSLDPSVHLTKADEPQNADDKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPDHRHWDAGIKVVRYLMKTKDAAITYDGR-MGTELTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCIKEV 261
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI) HSP 1 Score: 162 bits (409), Expect = 5.120e-40 Identity = 87/208 (41.83%), Postives = 130/208 (62.50%), Query Frame = 2
Query: 584 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKD 1201
L ++F +KD+G+A Y +G I R+R R L Q +Y+++++KR++++ K +P +GV TLS+ D P+ PEE+E M PY AVGA+M+T T TRPD+A A+ +R+ NPG H K V I +YL RTKD + YGE ++ YTD+ F + D +S+SG V L GA+SW S+ Q A T+EA+Y+A +E K+
Sbjct: 527 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESELK--LKGYTDASFASDKDDSKSISGYVFTLNGGAVSWKSSKQATVADSTTEAEYIAASEAAKE 731
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438HF44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HF44_VITVI) HSP 1 Score: 152 bits (384), Expect = 1.380e-39 Identity = 83/202 (41.09%), Postives = 117/202 (57.92%), Query Frame = 2
Query: 578 AELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYV 1177
A + F +KD+G+A Y +G I R+R LK Q Y+E ++KRF++ K K P G SKA PQN +E+E+MK PY VG+LM+ TRPDIA V + R+ NPG H KA K+ +YL TKD +TY + + D+DF C+D ++S +G + M+A GA+SW S Q +TA+ T EA+YV
Sbjct: 70 AHVVTHFDMKDLGEAFYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYV 269
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438KM46_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KM46_VITVI) HSP 1 Score: 152 bits (384), Expect = 1.820e-39 Identity = 83/200 (41.50%), Postives = 116/200 (58.00%), Query Frame = 2
Query: 584 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYV 1177
L F +KD+G+A Y +G I R+R LK Q Y+E ++KRF++ K K P G SKA PQN +E+E+MK PY VG+LM+ TRPDIA V + R+ NPG H KA K+ +YL TKD +TY G + + D+DF C+D ++S +G + M+A GA+SW S Q +T + T EA+YV
Sbjct: 2 LSTHFDMKDLGEASYVLGITILRDRANGVLKLSQKAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTGLLDVV-GFCDADFVDCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTTSSTMEAEYV 199
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: Q153Y5_SOLME (Polyprotein (Fragment) n=1 Tax=Solanum melongena TaxID=4111 RepID=Q153Y5_SOLME) HSP 1 Score: 153 bits (387), Expect = 2.490e-39 Identity = 82/221 (37.10%), Postives = 135/221 (61.09%), Query Frame = 2
Query: 548 KTKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGVPTLSKADE--PQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGE-QGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKD 1201
K++ +DR A+L ++F++KD+G+A+ +G I+R+R+ +L Q Y++ +++RF + ++K + P L + + P+ EE+E M PY AVG+LM+ TR DI+ AV V+R+ +PG H +AV I +Y+ T D G+ + + + G C+ Y DSD+ LD RRS +G + LAKG +SW ST+Q A T+EA+Y+A+ E VK+
Sbjct: 95 KSQFEIDRLKAQLSKEFEMKDLGEAKKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSSQLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITEAVKE 315
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI) HSP 1 Score: 160 bits (405), Expect = 2.510e-39 Identity = 86/208 (41.35%), Postives = 129/208 (62.02%), Query Frame = 2
Query: 584 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKD 1201
L ++F +KD+G+A Y +G I R+R R L Q +Y+++++KR++++ K +P +GV TLS+ D P+ PEE+E M PY AVGA+M+T T TRPD+A A+ +R+ NPG H K V I +YL RTKD + YGE ++ YTD+ F + D +S+SG V L G +SW S+ Q A T+EA+Y+A +E K+
Sbjct: 921 LSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESELK--LKGYTDASFASDKDDSKSISGYVFTLNGGTVSWKSSKQATVADSTTEAEYIAASEAAKE 1125
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A5BJG5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Vitis vinifera TaxID=29760 RepID=A5BJG5_VITVI) HSP 1 Score: 152 bits (385), Expect = 4.240e-39 Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = 2
Query: 584 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAE 1189
L F +KD G+A Y +G I R+R LK Q +Y+E ++KRF++ K K P G SKA PQN +E+E+MK PY VG+LM+ T PDIA V + R+ NPG H KA K+ +YL TKD +TY + + D+DF C+D ++S +G + M+A GA+SW S Q +TA+ T EA+YVA E
Sbjct: 52 LSTHFDMKDFGEASYVLGIKILRDRANGVLKLSQRVYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTCPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYVACYE 253
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 151 bits (381), Expect = 8.680e-39 Identity = 86/214 (40.19%), Postives = 126/214 (58.88%), Query Frame = 2
Query: 566 DRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQG-CGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAEVVKDV 1204
D+F +L ++K++GD +Y GC R+ LK Q Y E + F V+ +IP G+ LS+ D + E++ +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P H +A + I Y++RT D GIT+ G ME + D+D+ + RRSVSG ++M G ISW S Q+ T+EA+YV+LA+V+K+V
Sbjct: 36 DQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEV 242
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Match: A0A438D1W2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D1W2_VITVI) HSP 1 Score: 152 bits (384), Expect = 3.440e-38 Identity = 83/204 (40.69%), Postives = 116/204 (56.86%), Query Frame = 2
Query: 584 LGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGVPTLSKADEPQNPEEKEDMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLRTKDWGITYGEQGCGPCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSTMQEVTAAGTSEAKYVALAE 1189
L F +KD+G+A Y +G I R+R LK Q Y+E ++KRF++ K K P G SKA PQN +E+E+MK PY VG+LM+ TRPDIA V + R+ NPG H KA K+ +YL TKD +TY + + D+DF C+D ++S +G + M+A G +SW S Q +T + T EA+YVA E
Sbjct: 2 LSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNNDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTYQRTSLLDVV-GFCDADFAGCIDDKKSTTGYIFMMAGGVVSWKSVKQTLTTSSTMEAEYVACYE 203 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig62.17010.1 >prot_F-serratus_M_contig62.17010.1 ID=prot_F-serratus_M_contig62.17010.1|Name=mRNA_F-serratus_M_contig62.17010.1|organism=Fucus serratus male|type=polypeptide|length=214bp MDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKback to top mRNA from alignment at F-serratus_M_contig62:15365..16568+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig62.17010.1 ID=mRNA_F-serratus_M_contig62.17010.1|Name=mRNA_F-serratus_M_contig62.17010.1|organism=Fucus serratus male|type=mRNA|length=1204bp|location=Sequence derived from alignment at F-serratus_M_contig62:15365..16568+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig62:15365..16568+ >mRNA_F-serratus_M_contig62.17010.1 ID=mRNA_F-serratus_M_contig62.17010.1|Name=mRNA_F-serratus_M_contig62.17010.1|organism=Fucus serratus male|type=CDS|length=1284bp|location=Sequence derived from alignment at F-serratus_M_contig62:15365..16568+ (Fucus serratus male)back to top |