prot_F-serratus_M_contig1219.1705.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1219.1705.1
Unique Nameprot_F-serratus_M_contig1219.1705.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length313
Homology
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 5.580e-71
Identity = 122/230 (53.04%), Postives = 167/230 (72.61%), Query Frame = 0
Query:   19 RVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSV-------GTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENLACQIPVPQ 240
            R DL +G HT+V+ D+ETTG   KEDRVIQLAAKV+ S     +F+  VDP    +  ++RE+TGITP+ILAAN ARPF +VWP+FA+WL+ V       G   GG+V  AHNA+FDHKFL EE++R GFSR  + + +G+V IVD+L  L++ S+WR+  +D  +  RP++F LG +F++L+G E MP AH A+GDV GLER+LSAPGI++ WR +AS + +CQIPVP+
Sbjct:  736 RADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYE-MPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPR 964          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 5.350e-70
Identity = 122/230 (53.04%), Postives = 167/230 (72.61%), Query Frame = 0
Query:   19 RVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSV-------GTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENLACQIPVPQ 240
            R DL +G HT+V+ D+ETTG   KEDRVIQLAAKV+ S     +F+  +DP    +  ++RE+TGITP+ILAAN ARPF +VWP+FA+WL+ V       G   GG+V  AHNA+FDHKFL EE++R GFSR  + + +G+V IVD+L  L++ S+WR+  +D  +  RP++F LG +F++L+G E MP AH A+GDV GLER+LSAPGI++ WR +AS + ACQIPVP+
Sbjct: 1135 RADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYE-MPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVPR 1363          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 5.140e-37
Identity = 90/227 (39.65%), Postives = 129/227 (56.83%), Query Frame = 0
Query:   20 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKV--VRSGGLAET--FSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVG----------TSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENL 232
            +DL   EH  V+ D+ETTGF    DRV+Q+AA V  V  GG  +   F+   DP  KY+S KI+ LTGITPQ+L +  A  F + W QF +WL +            TS   IVL AHNA FDH FL+ E  RAG     ++  GI + VD++A+++D+ +WR++  D      P +  L ++++YL GR+ +  AH A+ DV  L  V++   +  RWR +AS  L
Sbjct: 1196 LDLTSEEHMFVVLDVETTGFSFAYDRVLQIAAAVLSVDGGGALQHGHFNMYCDP-AKYISAKIQGLTGITPQLLRSKGAVKFPQAWQQFQAWLNAAAAQHKATNGNATSGTSIVLIAHNANFDHGFLVAETERAGLGSDAISSAGITAFVDSVALVKDRDLWRQAGMDP-----PPTNKLTDVYEYLEGRK-VSDAHNAMADVIALATVVNGSVLRDRWREMASMGL 1415          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A4D9CQG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQG2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 9.040e-35
Identity = 93/241 (38.59%), Postives = 131/241 (54.36%), Query Frame = 0
Query:   20 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVR----------------------SGGLAET---FSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGG--IVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENL 232
            +DL   + T +IFD ETTG   + +R+IQLAAKV+                       SGG  E    F+  VDP G ++  KI E+TGI+ + L    AR F +VWP F  W+ +V   RGG  +VL AHNA FDHK LM ++ R+        E   IV ++DTLAV R   +W R   D  L  +P +F  G L++YL  R+++  AH+A GDV GLE +L  P ++++WR   S ++
Sbjct: 1032 IDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSDWGGGEDDEQANQLAAAGLASGGEPEDGLLFNGYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAV---RGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLL-RDDLQNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHV 1266          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: W7TB29_9STRA (Atp-dependent dna helicase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB29_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.070e-34
Identity = 93/241 (38.59%), Postives = 131/241 (54.36%), Query Frame = 0
Query:   20 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRS----------------------GGLAET---FSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGG--IVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENL 232
            +DL   + T +IFD ETTG   + +R+IQLAAKV+                        GG  E    F+A VDP G ++  KI E+TGI+ + L    AR F +VWP F  W+ +V   RGG  +VL AHNA FDHK LM ++ R+        E   IV ++DTLAV R   +W R   D  L  +P +F  G L++YL  R+++  AH+A GDV GLE +L  P ++++WR   S ++
Sbjct:  614 IDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAV---RGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLL-RDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHV 848          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 3.880e-17
Identity = 60/172 (34.88%), Postives = 81/172 (47.09%), Query Frame = 0
Query:   20 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALV-DPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARA----------------GFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADT 174
            V L+     IV+ D+ETTG      RV+QLAAKV+ S      F+  +  PE    +   RE+TGIT ++L    A PF++ W  F  WL  V       VL AHNA FD +FL  EI R                    R  LA   + ++V T  +L+D+S+W    A T
Sbjct:   33 VSLLQENVVIVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLAEV-------VLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARENVAAVVCTWKLLKDRSLWAPRAAAT 197          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A1M6JC93_9FIRM (DNA polymerase III PolC-type n=1 Tax=Tepidibacter formicigenes DSM 15518 TaxID=1123349 RepID=A0A1M6JC93_9FIRM)

HSP 1 Score: 80.1 bits (196), Expect = 6.860e-13
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 0
Query:   26 EHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERV 214
            E   V+FD+ETTGF  K DR+ ++ A  +++  + + FS LV+PE K + YK++ELTGIT  ++   N     K+ P+F  ++        G VL AHNA FD  F+ E   R     +          +DT+A+ ++            LLP  + + L  + K L+    +   H A+ D      +
Sbjct:  415 EQNFVVFDIETTGFSAKNDRITEIGAVKIKNFEIVDRFSVLVNPE-KSIPYKVQELTGITNDMV--KNEPTIEKIMPEFLEFIK-------GSVLVAHNADFDIGFIKENCNRLSLEFNN-------RFIDTIALAKE------------LLPNLKRYKLNIVAKELN--VSLENHHRAVDDAEATSEI 572          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A316SBV9_CLOSP (3'-5' exonuclease n=1 Tax=Clostridium sp. TaxID=1506 RepID=A0A316SBV9_CLOSP)

HSP 1 Score: 76.3 bits (186), Expect = 1.260e-12
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 0
Query:   30 VIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDP---EGK--YLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNA-RFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERV 214
            V+FDLET+GF +K+DR+I++ A  V++G + + FS L  P    GK  ++S +I E+TGI  Q L        N     F+ WL+ + ++   IV  AHN  +FD  FL E   RAG      A+     I+DTL V++          D  +LP  +   L   F   +       AH A+ D   L  +
Sbjct:   43 VVFDLETSGFSRKDDRIIEIGAVYVKNGVVVDRFSQLCSPGYKNGKKVFISARITEVTGIRNQDLLDKPEE--NVAVNDFSKWLSDLHSN--SIVAIAHNGIKFDIPFLKEACKRAG------AKFNFSYIIDTLEVVKSIGY-----VDKGILPNSKQETLANYFGIEYD------AHRAVNDCEALAEI 212          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A6N3FUY9_9FIRM (DNA polymerase III PolC-type n=10 Tax=root TaxID=1 RepID=A0A6N3FUY9_9FIRM)

HSP 1 Score: 78.6 bits (192), Expect = 2.230e-12
Identity = 60/192 (31.25%), Postives = 95/192 (49.48%), Query Frame = 0
Query:    1 MEGAIGENHRPIDPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYL 192
            +EG + E++ PI  +A  +    D   T V+FDLETTGF  K D++ ++ A  V++  + + F+ L++PE K +SYK++ELTGIT  ++   +     ++ P+F  ++       G  VL AHNA FD  F+ ++           +       VDTL + R             LLP  + F L  L K L
Sbjct:  394 VEGYLVEDNAPIIREANDK----DLSQTFVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDRFNELINPE-KDISYKVQELTGITNDLI--KDKPTIEEILPKFMEFV-------GDSVLVAHNAEFDIGFINQKCKEMNIEFKNKS-------VDTLMLARI------------LLPHLKRFKLNNLTKEL 552          
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A0B3VIF6_9FIRM (DNA polymerase III PolC-type n=9 Tax=Bacteria TaxID=2 RepID=A0A0B3VIF6_9FIRM)

HSP 1 Score: 78.2 bits (191), Expect = 3.000e-12
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 0
Query:    1 MEGAIGENHRPIDPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYL 192
            +EG + E++ P+   A  +    D   T VIFDLETTGF  K D++ ++ A  V +  + + FS L++PE K +SYK++ELTGIT  ++   +     +V P+F  ++       G  VL AHNA FD  F+ ++           +       VDTL + R             LLP  + F L  + K L
Sbjct:  393 VEGYLVEDNLPVIQKANDK----DLSQTFVIFDLETTGFSNKNDKITEIGAVKVENFKVVDRFSQLINPE-KDISYKVQELTGITNDLI--KDKPTIEEVLPKFVEFI-------GDSVLVAHNADFDMGFMQQKCREQNIEFKNTS-------VDTLTLART------------LLPYMKRFRLNLIAKEL 551          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN7_ECTSI5.580e-7153.04ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A6H5JXY9_9PHAE5.350e-7053.04ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A836CEI0_9STRA5.140e-3739.65ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
A0A4D9CQG2_9STRA9.040e-3538.59Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TB29_9STRA1.070e-3438.59Atp-dependent dna helicase (Fragment) n=1 Tax=Nann... [more]
A0A7S3UQS9_HETAK3.880e-1734.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1M6JC93_9FIRM6.860e-1329.63DNA polymerase III PolC-type n=1 Tax=Tepidibacter ... [more]
A0A316SBV9_CLOSP1.260e-1232.463'-5' exonuclease n=1 Tax=Clostridium sp. TaxID=15... [more]
A0A6N3FUY9_9FIRM2.230e-1231.25DNA polymerase III PolC-type n=10 Tax=root TaxID=1... [more]
A0A0B3VIF6_9FIRM3.000e-1231.77DNA polymerase III PolC-type n=9 Tax=Bacteria TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 28..224
e-value: 6.6E-12
score: 55.6
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 30..209
e-value: 1.5E-16
score: 61.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 25..222
e-value: 1.7E-37
score: 131.1
NoneNo IPR availablePANTHERPTHR13058THREE PRIME REPAIR EXONUCLEASE 1, 2coord: 28..217
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 26..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1219contigF-serratus_M_contig1219:235484..238527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1219.1705.1mRNA_F-serratus_M_contig1219.1705.1Fucus serratus malemRNAF-serratus_M_contig1219 235073..238850 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1219.1705.1 ID=prot_F-serratus_M_contig1219.1705.1|Name=mRNA_F-serratus_M_contig1219.1705.1|organism=Fucus serratus male|type=polypeptide|length=313bp
MEGAIGENHRPIDPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLA
AKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKV
WPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELG
IVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPG
AHTALGDVRGLERVLSAPGISQRWRLIASENLACQIPVPQCGPAGLDAQK
RDAPSSVVASAAPAKRTSAKDPRKGKDGKAESAQVERSRMRAREWAKEQQ
AKKKAQAAQKKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf