mRNA_F-serratus_M_contig1219.1705.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1219.1705.1
Unique NamemRNA_F-serratus_M_contig1219.1705.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 7.840e-68
Identity = 122/230 (53.04%), Postives = 167/230 (72.61%), Query Frame = 1 
Query:  466 RVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSV-------GTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENLACQIPVPQ 1131
            R DL +G HT+V+ D+ETTG   KEDRVIQLAAKV+ S     +F+  VDP    +  ++RE+TGITP+ILAAN ARPF +VWP+FA+WL+ V       G   GG+V  AHNA+FDHKFL EE++R GFSR  + + +G+V IVD+L  L++ S+WR+  +D  +  RP++F LG +F++L+G E MP AH A+GDV GLER+LSAPGI++ WR +AS + +CQIPVP+
Sbjct:  736 RADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYE-MPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPR 964
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 7.750e-67
Identity = 122/230 (53.04%), Postives = 167/230 (72.61%), Query Frame = 1 
Query:  466 RVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSV-------GTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENLACQIPVPQ 1131
            R DL +G HT+V+ D+ETTG   KEDRVIQLAAKV+ S     +F+  +DP    +  ++RE+TGITP+ILAAN ARPF +VWP+FA+WL+ V       G   GG+V  AHNA+FDHKFL EE++R GFSR  + + +G+V IVD+L  L++ S+WR+  +D  +  RP++F LG +F++L+G E MP AH A+GDV GLER+LSAPGI++ WR +AS + ACQIPVP+
Sbjct: 1135 RADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYE-MPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVPR 1363
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.310e-35
Identity = 94/250 (37.60%), Postives = 136/250 (54.40%), Query Frame = 1 
Query:  400 RVAAMEGAIGENHRPIDPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKV--VRSGGLAET--FSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVG----------TSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENL 1107
            R+ A   A     +  D  +   +DL   EH  V+ D+ETTGF    DRV+Q+AA V  V  GG  +   F+   DP  KY+S KI+ LTGITPQ+L +  A  F + W QF +WL +            TS   IVL AHNA FDH FL+ E  RAG     ++  GI + VD++A+++D+ +WR++  D      P +  L ++++YL GR+ +  AH A+ DV  L  V++   +  RWR +AS  L
Sbjct: 1173 RLKAAPSASARGSKAADTPSLPPLDLTSEEHMFVVLDVETTGFSFAYDRVLQIAAAVLSVDGGGALQHGHFNMYCDP-AKYISAKIQGLTGITPQLLRSKGAVKFPQAWQQFQAWLNAAAAQHKATNGNATSGTSIVLIAHNANFDHGFLVAETERAGLGSDAISSAGITAFVDSVALVKDRDLWRQAGMDP-----PPTNKLTDVYEYLEGRK-VSDAHNAMADVIALATVVNGSVLRDRWREMASMGL 1415
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: W7TB29_9STRA (Atp-dependent dna helicase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB29_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.420e-32
Identity = 93/241 (38.59%), Postives = 131/241 (54.36%), Query Frame = 1 
Query:  469 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRS----------------------GGLAET---FSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGG--IVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENL 1107
            +DL   + T +IFD ETTG   + +R+IQLAAKV+                        GG  E    F+A VDP G ++  KI E+TGI+ + L    AR F +VWP F  W+ +V   RGG  +VL AHNA FDHK LM ++ R+        E   IV ++DTLAV R   +W R   D  L  +P +F  G L++YL  R+++  AH+A GDV GLE +L  P ++++WR   S ++
Sbjct:  614 IDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAV---RGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLL-RDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHV 848
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A4D9CQG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQG2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.420e-32
Identity = 93/241 (38.59%), Postives = 131/241 (54.36%), Query Frame = 1 
Query:  469 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVR----------------------SGGLAET---FSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGG--IVLAAHNARFDHKFLMEEIARAGFSRSTLAE-LGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERVLSAPGISQRWRLIASENL 1107
            +DL   + T +IFD ETTG   + +R+IQLAAKV+                       SGG  E    F+  VDP G ++  KI E+TGI+ + L    AR F +VWP F  W+ +V   RGG  +VL AHNA FDHK LM ++ R+        E   IV ++DTLAV R   +W R   D  L  +P +F  G L++YL  R+++  AH+A GDV GLE +L  P ++++WR   S ++
Sbjct: 1032 IDLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSDWGGGEDDEQANQLAAAGLASGGEPEDGLLFNGYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAV---RGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLL-RDDLQNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAHV 1266
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 2.510e-16
Identity = 60/172 (34.88%), Postives = 81/172 (47.09%), Query Frame = 1 
Query:  469 VDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALV-DPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARA----------------GFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADT 933
            V L+     IV+ D+ETTG      RV+QLAAKV+ S      F+  +  PE    +   RE+TGIT ++L    A PF++ W  F  WL  V       VL AHNA FD +FL  EI R                    R  LA   + ++V T  +L+D+S+W    A T
Sbjct:   33 VSLLQENVVIVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLAEV-------VLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARENVAAVVCTWKLLKDRSLWAPRAAAT 197
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A316SBV9_CLOSP (3'-5' exonuclease n=1 Tax=Clostridium sp. TaxID=1506 RepID=A0A316SBV9_CLOSP)

HSP 1 Score: 76.3 bits (186), Expect = 4.950e-12
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 1 
Query:  499 VIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDP---EGK--YLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNA-RFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERV 1053
            V+FDLET+GF +K+DR+I++ A  V++G + + FS L  P    GK  ++S +I E+TGI  Q L        N     F+ WL+ + ++   IV  AHN  +FD  FL E   RAG      A+     I+DTL V++          D  +LP  +   L   F   +       AH A+ D   L  +
Sbjct:   43 VVFDLETSGFSRKDDRIIEIGAVYVKNGVVVDRFSQLCSPGYKNGKKVFISARITEVTGIRNQDLLDKPEE--NVAVNDFSKWLSDLHSN--SIVAIAHNGIKFDIPFLKEACKRAG------AKFNFSYIIDTLEVVKSIGY-----VDKGILPNSKQETLANYFGIEYD------AHRAVNDCEALAEI 212
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A1M6JC93_9FIRM (DNA polymerase III PolC-type n=1 Tax=Tepidibacter formicigenes DSM 15518 TaxID=1123349 RepID=A0A1M6JC93_9FIRM)

HSP 1 Score: 80.1 bits (196), Expect = 6.520e-12
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:  487 EHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPGAHTALGDVRGLERV 1053
            E   V+FD+ETTGF  K DR+ ++ A  +++  + + FS LV+PE K + YK++ELTGIT  ++   N     K+ P+F  ++        G VL AHNA FD  F+ E   R     +          +DT+A+ ++            LLP  + + L  + K L+    +   H A+ D      +
Sbjct:  415 EQNFVVFDIETTGFSAKNDRITEIGAVKIKNFEIVDRFSVLVNPE-KSIPYKVQELTGITNDMV--KNEPTIEKIMPEFLEFIK-------GSVLVAHNADFDIGFIKENCNRLSLEFNN-------RFIDTIALAKE------------LLPNLKRYKLNIVAKELN--VSLENHHRAVDDAEATSEI 572
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: T0DW25_PAES9 (Exonuclease, DNA polymerase III, epsilon subunit family domain protein n=1 Tax=Paeniclostridium sordellii (strain ATCC 9714 / DSM 2141 / JCM 3814 / LMG 15708 / NCIMB 10717 / 211) TaxID=1292036 RepID=T0DW25_PAES9)

HSP 1 Score: 77.0 bits (188), Expect = 1.350e-11
Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  412 MEGAIGENHRPI--DPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLR 897
            +EG + E+  PI  DP+  G       + T V+FD+ETTGF    D++ ++ A  + S  + + FS LV+PE   +SYKI+ELTGIT  +++  +     ++ P+F   L  VG S    VL AHNA FD  F+ ++    G      +       VDTL + R
Sbjct:   92 VEGYLAEDEVPIVKDPNKKGL------DQTFVVFDIETTGFSNTNDKITEIGAVKIESFKVVDRFSELVNPEVD-ISYKIQELTGITNDLVS--DKPTIEEILPKF---LEFVGDS----VLVAHNAEFDMGFISQKSREQGLEFKNKS-------VDTLTLAR 232
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BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Match: A0A6N3FUY9_9FIRM (DNA polymerase III PolC-type n=10 Tax=root TaxID=1 RepID=A0A6N3FUY9_9FIRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.500e-11
Identity = 60/192 (31.25%), Postives = 95/192 (49.48%), Query Frame = 1 
Query:  412 MEGAIGENHRPIDPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLAAKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKVWPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELGIVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYL 987
            +EG + E++ PI  +A  +    D   T V+FDLETTGF  K D++ ++ A  V++  + + F+ L++PE K +SYK++ELTGIT  ++   +     ++ P+F  ++       G  VL AHNA FD  F+ ++           +       VDTL + R             LLP  + F L  L K L
Sbjct:  394 VEGYLVEDNAPIIREANDK----DLSQTFVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDRFNELINPE-KDISYKVQELTGITNDLI--KDKPTIEEILPKFMEFV-------GDSVLVAHNAEFDIGFINQKCKEMNIEFKNKS-------VDTLMLARI------------LLPHLKRFKLNNLTKEL 552
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1219.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN7_ECTSI7.840e-6853.04ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A6H5JXY9_9PHAE7.750e-6753.04ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A836CEI0_9STRA1.310e-3537.60ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
W7TB29_9STRA1.420e-3238.59Atp-dependent dna helicase (Fragment) n=1 Tax=Nann... [more]
A0A4D9CQG2_9STRA1.420e-3238.59Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3UQS9_HETAK2.510e-1634.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A316SBV9_CLOSP4.950e-1232.463'-5' exonuclease n=1 Tax=Clostridium sp. TaxID=15... [more]
A0A1M6JC93_9FIRM6.520e-1229.63DNA polymerase III PolC-type n=1 Tax=Tepidibacter ... [more]
T0DW25_PAES91.350e-1134.76Exonuclease, DNA polymerase III, epsilon subunit f... [more]
A0A6N3FUY9_9FIRM1.500e-1131.25DNA polymerase III PolC-type n=10 Tax=root TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1219contigF-serratus_M_contig1219:235073..238850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.4
Seed ortholog evalue4.3e-63
Seed eggNOG ortholog2880.D7FPN7
Preferred nameTREX2
KEGG rclassRC02795
KEGG koko:K02335,ko:K03655,ko:K10790,ko:K10791,ko:K10900,ko:K10905
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,ko03460,ko04623,map00230,map00240,map01100,map03030,map03410,map03420,map03440,map03460,map04623
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0000266,GO:0000287,GO:0000738,GO:0001817,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010033,GO:0010501,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0019439,GO:0030554,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032404,GO:0032405,GO:0032407,GO:0032479,GO:0032552,GO:0032554,GO:0032558,GO:0033554,GO:0033955,GO:0034097,GO:0034641,GO:0034645,GO:0034655,GO:0035456,GO:0035458,GO:0036094,GO:0042175,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0048285,GO:0050789,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098827,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
EggNOG free text desc.exodeoxyribonuclease III activity
EggNOG OGsCOG0847@1,KOG0344@1,KOG0344@2759,KOG4793@2759
EC2.7.7.7,3.1.11.2,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons6
Model size1673
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1219.1705.1prot_F-serratus_M_contig1219.1705.1Fucus serratus malepolypeptideF-serratus_M_contig1219 235484..238527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.0136929-UTR-F-serratus_M_contig1219:235072..2354831622929138.0136929-UTR-F-serratus_M_contig1219:235072..235483Fucus serratus maleUTRF-serratus_M_contig1219 235073..235483 +
1690962720.6828134-UTR-F-serratus_M_contig1219:235072..2354831690962720.6828134-UTR-F-serratus_M_contig1219:235072..235483Fucus serratus maleUTRF-serratus_M_contig1219 235073..235483 +
1622929138.1182597-UTR-F-serratus_M_contig1219:238527..2388501622929138.1182597-UTR-F-serratus_M_contig1219:238527..238850Fucus serratus maleUTRF-serratus_M_contig1219 238528..238850 +
1690962720.760208-UTR-F-serratus_M_contig1219:238527..2388501690962720.760208-UTR-F-serratus_M_contig1219:238527..238850Fucus serratus maleUTRF-serratus_M_contig1219 238528..238850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.0269012-CDS-F-serratus_M_contig1219:235483..2356391622929138.0269012-CDS-F-serratus_M_contig1219:235483..235639Fucus serratus maleCDSF-serratus_M_contig1219 235484..235639 +
1690962720.6966026-CDS-F-serratus_M_contig1219:235483..2356391690962720.6966026-CDS-F-serratus_M_contig1219:235483..235639Fucus serratus maleCDSF-serratus_M_contig1219 235484..235639 +
1622929138.0452013-CDS-F-serratus_M_contig1219:235959..2360411622929138.0452013-CDS-F-serratus_M_contig1219:235959..236041Fucus serratus maleCDSF-serratus_M_contig1219 235960..236041 +
1690962720.705667-CDS-F-serratus_M_contig1219:235959..2360411690962720.705667-CDS-F-serratus_M_contig1219:235959..236041Fucus serratus maleCDSF-serratus_M_contig1219 235960..236041 +
1622929138.0632138-CDS-F-serratus_M_contig1219:236522..2367121622929138.0632138-CDS-F-serratus_M_contig1219:236522..236712Fucus serratus maleCDSF-serratus_M_contig1219 236523..236712 +
1690962720.7183516-CDS-F-serratus_M_contig1219:236522..2367121690962720.7183516-CDS-F-serratus_M_contig1219:236522..236712Fucus serratus maleCDSF-serratus_M_contig1219 236523..236712 +
1622929138.0786703-CDS-F-serratus_M_contig1219:237032..2371631622929138.0786703-CDS-F-serratus_M_contig1219:237032..237163Fucus serratus maleCDSF-serratus_M_contig1219 237033..237163 +
1690962720.73098-CDS-F-serratus_M_contig1219:237032..2371631690962720.73098-CDS-F-serratus_M_contig1219:237032..237163Fucus serratus maleCDSF-serratus_M_contig1219 237033..237163 +
1622929138.0955658-CDS-F-serratus_M_contig1219:237700..2378091622929138.0955658-CDS-F-serratus_M_contig1219:237700..237809Fucus serratus maleCDSF-serratus_M_contig1219 237701..237809 +
1690962720.739492-CDS-F-serratus_M_contig1219:237700..2378091690962720.739492-CDS-F-serratus_M_contig1219:237700..237809Fucus serratus maleCDSF-serratus_M_contig1219 237701..237809 +
1622929138.1078653-CDS-F-serratus_M_contig1219:238256..2385271622929138.1078653-CDS-F-serratus_M_contig1219:238256..238527Fucus serratus maleCDSF-serratus_M_contig1219 238257..238527 +
1690962720.7510264-CDS-F-serratus_M_contig1219:238256..2385271690962720.7510264-CDS-F-serratus_M_contig1219:238256..238527Fucus serratus maleCDSF-serratus_M_contig1219 238257..238527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1219.1705.1

>prot_F-serratus_M_contig1219.1705.1 ID=prot_F-serratus_M_contig1219.1705.1|Name=mRNA_F-serratus_M_contig1219.1705.1|organism=Fucus serratus male|type=polypeptide|length=313bp
MEGAIGENHRPIDPDAAGRVDLVDGEHTIVIFDLETTGFHQKEDRVIQLA
AKVVRSGGLAETFSALVDPEGKYLSYKIRELTGITPQILAANNARPFNKV
WPQFASWLTSVGTSRGGIVLAAHNARFDHKFLMEEIARAGFSRSTLAELG
IVSIVDTLAVLRDKSMWRRSDADTDLLPRPRSFNLGELFKYLHGREEMPG
AHTALGDVRGLERVLSAPGISQRWRLIASENLACQIPVPQCGPAGLDAQK
RDAPSSVVASAAPAKRTSAKDPRKGKDGKAESAQVERSRMRAREWAKEQQ
AKKKAQAAQKKA*
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mRNA from alignment at F-serratus_M_contig1219:235073..238850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1219.1705.1 ID=mRNA_F-serratus_M_contig1219.1705.1|Name=mRNA_F-serratus_M_contig1219.1705.1|organism=Fucus serratus male|type=mRNA|length=3778bp|location=Sequence derived from alignment at F-serratus_M_contig1219:235073..238850+ (Fucus serratus male)
GTTGATTCTTGTCTTACAATTATGATCATAACCGTTGCACAAGGGACGGA
CGCATTCGTGCTGACTACTTTCGTCTTTTGATGCGCCCGCTAACCGGTGT
AGACGCTCACACCGTTTTCTCGTCGCGTGGTGGGAATCCTGCCCTTGTCG
CCTTCGCATCGGAAAACAAGTGACTGAGACGATCAGGTTCGCGAAAGGCT
CTGGAGCGCAGGGGCTTCTACCGCTGGAACGCTTGCCCGGGACGGCAGCG
GTTTCGTGGAGGGAAAGTAGACTTTTCATCATCTCGCGCACCACCCAGCG
GGCGGGGAAATATTTTCACGCAGAGGCAGCTGGCGGGGCAAATCTTCTTC
TGGGCGCGCACGCATTGGTGCCGAACATAACGCTTGCACTACTACGACGA
GGGTGGCGGCAATGGAGGGAGCCATTGGAGAAAACCATCGTCCGATAGAC
CCGGATGCCGCCGGGAGGGTAGACTTGGTGGACGGGGAACACACCATCGT
CATCTTCGACCTCGAAACTACAGGTTTTCATCAGAAGGAAGATCGGGTGA
TCCAACTCGCTGCAAAGGTGGGTGGGGTTTTGCTTCACACCAGCTCATGG
TCTCCGAGTCTAGCGACACAAGAGCGGACGGTTATTTACCTCTTCCTGAT
TCCGTCTCACGCCGCCCACAAATTTCTCCGCAGTAACCTCATTGGATTGA
TGATATCCGCTTCCTTCAACGCGAAGATAGCCCTAGTGCTCTTTCAGTTG
AAGCTATGAAGCTATGCGTCTTGGTCCCGGCTGACAGTCGTGTGGGCACC
CGTTGCTGGCGGAACCGCGTGCATGACTTGCGGCATTTGAGTAGCGCCAC
ACCTTACCATCTGTTTCGAAAATATCTGTGTTGACAGGTTGTGAGAAGCG
GTGGCCTTGCTGAGACTTTCTCTGCTCTTGTTGATCCGGAGGGAAAGTAC
CTGTCGTACAAGATCCGAGGTACGTCCGGAGCACAGTCCTGAGAGCGCGT
ACGCCCACTTCAGCGGAAGGGAGGGGATTTCACATCCATCCATCCGTCAT
GAATACTGCTTCGCCTGTGGCGATGGCGTTTCACCCATTTTATACGCTTG
TTGTTTCCCCGGGGTCGTTTTGTCTTGTTCCCCTGCTTGCCTGGCTTTAT
CACTGGCTTTATTAGCTCGCTCTCTTGTCTTTCTTTGTTAGCTCGCTCTC
TTGTCTTTCTTTGTTGGCTCGCTCTCTTGTCTTTCTTTGTTAGCTCGCTC
TCTTGTCCACTTTCGCAGTGTTTCGTCGTTACTTCCATGTTTGGTTTCAT
GAAGAGTTAGTTCATTGGGGTGCCAGCACCTCTTCTTGACGACAGGGTCG
AGTCGAGTCGAGGGACTGCGAAAGTTTGCACGCTCCGTCGAGCTCGCCTT
CGACTGATGATATTTGCTGGCGAACTTTCGACTGTTGTTTGTCTTGCCAG
AACTGACAGGTATAACTCCGCAAATCCTGGCGGCCAACAACGCGCGACCG
TTCAACAAAGTGTGGCCACAATTTGCATCATGGCTTACATCAGTTGGGAC
GAGCCGCGGGGGTATCGTATTGGCTGCGCACAACGCACGCTTCGACCACA
AATTCCTGATGGAGGAGATAGCTCGGGCGGGCTTCAGCCGGTGGGTCGCG
CTCGACGGGCGACAGCTAGAGTGCTGAGAGTGCTGAGAGCGCTATGTTTT
ATGTTTGGCGGTCGTAGAGAGGGTGAGATCAGATCAGATCCGAGTCGGTC
AACGAGCGGAGGGAGAGAATGCGCGTGTGTCGATTACCGTACTCATGAAG
CGAAAAAGGCAAACATCTTGCTGCGAAATAAATCTTACCAGTACTATTCG
ACTTCGGTTCACGAGGCAGAGCTATTAATAAGTACAACGTGCCGTGACCA
ATAAAACTTGTATTTTGATTTTCCTTCTCAATGTCTCGTCATCGGCCCTT
CTCCCTTCAGCTCCACACTGGCAGAGCTCGGCATCGTGTCGATTGTTGAC
ACGCTCGCTGTGCTCCGAGACAAATCGATGTGGCGCCGGAGTGATGCCGA
CACAGATCTGCTACCACGGCCGCGTAGCTTCAATCTCGGAGGTTAGTATT
AATAAGTGTGAGCGATGGTTCGGGGACGATATCACGCTCTCACGCTTTTG
AAATAATCCCTCTCCCTCCCCCGTGCACAGAAGCGCGACTTGCTTGTCGT
GGGCGAAGCCGAAGGAGGGGTTCAACGATTGGGGAGGGCGGGGATACGAC
GGTTTTGTCCCCTGGCAGGTCACCAAATGAGCCCCTTCCGGGGGTGAGAC
TACATGACCCCCTACATGGTCGGCAAGCTTGCCCCGAATTCATCGCATTT
GATCAGGGGGTTGGTCAAATATGTCTCCTGTAGGGGCTATTTTCGTGCCT
TTCCTTCCCAAAACGGGGACAAATATGTTATATCCCCGCCCCCCCCCCAA
TCGTTGAACTGGTCCGAGGTGAGCACATGTTCTTTCGCGTGTTTTAGTGG
CGTGCGTATTGAAACGAACGTCCGCGTCCGCGTTGGCAACCCTAATCCCG
TACATCCCGCACCTATTTTTCTTGTGTGATGTGAGACACCGCTTCCTCCC
CCTTAATTGCCTGCCTTTCATCGTCCAGAGCTATTCAAATACTTGCACGG
GCGCGAAGAAATGCCCGGGGCACATACTGCTCTTGGTGATGTACGGGGCT
TGGAACGTGTTCTATCTGCGCCGGGCATAAGCCAGAGGTGAGAGGAATGA
ATAATTATGCACACTCACGTACGGTGAATTGTGAATTGCGTCGCTCCTTG
GAGAGGGAAAAACTCGAGCAGCGTGTGAAGGGTGCAGGTGACTAAACGGC
CTGCATTCGGGCGCTTTTCCTTTGGAAGTAAGAGCGTGTACCTTAGCCTT
AGTCAAGCATTTCGTTGTTGCTTGTCGAAAAAAGGAGGCCAAGTTCAATC
AATGGCGAGAAATGTTAAAAAAACGCGACCGCCTCAGAACAAGGGGTCGT
TTATTCCCTACCCCGTCGAGTATATGCTTTGGTTCTTTGGTTCCATTTTC
CTTTGTCGCCCGTTTTCCCAAGCAAACAACATCCTACACTGGTACTGGAG
GGTATGATAACACAGAGAGCGTCACACACTCTTCACACCATACCCCCCCC
CTGCCCTTCTGCGTCGTAATCGTCGTCGACAAAGATGGCGGCTTATAGCA
AGCGAAAACCTCGCGTGCCAGATACCGGTACCGCAATGTGGACCGGCGGG
ATTGGACGCCCAGAAACGCGATGCACCCAGCTCGGTCGTTGCTTCTGCCG
CCCCTGCGAAGAGAACATCGGCGAAGGACCCGCGTAAGGGGAAGGACGGC
AAAGCCGAATCGGCCCAAGTGGAACGCTCTAGAATGCGAGCGAGGGAGTG
GGCAAAGGAGCAGCAGGCGAAGAAGAAGGCACAAGCCGCTCAGAAGAAAG
CCTGACTATTAGTCAACGCTGTCGAAACGAAAATAAGGGAAAACCTCGGG
GTGGTGGACCCACTATTAAGGCTCTGGATCACAAGCGTAGCGTTCTCGAC
ACAATCGACGCATGGAGTTGGCCGACCCATGAAGCAACGATAAAGTATAA
AACTGTAAAGTTCTCCGCTGTGAATGTGTCAGTCAACGTTCGGGTATTCA
TTCAATGGGGGTTTCAGAGATTGGCGGCTACTGCCCTCCGATGGCCGGAG
AGATTGTGTCTTGTTGTCGTGTTTTTTTCCCGCGAAGATTCCTGCGATGA
TAATGAAAGTACCGCCATCATAATTGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1219:235073..238850+

>mRNA_F-serratus_M_contig1219.1705.1 ID=mRNA_F-serratus_M_contig1219.1705.1|Name=mRNA_F-serratus_M_contig1219.1705.1|organism=Fucus serratus male|type=CDS|length=1878bp|location=Sequence derived from alignment at F-serratus_M_contig1219:235073..238850+ (Fucus serratus male)
ATGGAGGGAGCCATTGGAGAAAACCATCGTCCGATAGACCCGGATGCCGC
CGGGAGGGTAGACTTGGTGGACGGGGAACACACCATCGTCATCTTCGACC
TCGAAACTACAGGTTTTCATCAGAAGGAAGATCGGGTGATCCAACTCGCT
GCAAAGATGGAGGGAGCCATTGGAGAAAACCATCGTCCGATAGACCCGGA
TGCCGCCGGGAGGGTAGACTTGGTGGACGGGGAACACACCATCGTCATCT
TCGACCTCGAAACTACAGGTTTTCATCAGAAGGAAGATCGGGTGATCCAA
CTCGCTGCAAAGGTTGTGAGAAGCGGTGGCCTTGCTGAGACTTTCTCTGC
TCTTGTTGATCCGGAGGGAAAGTACCTGTCGTACAAGATCCGAGGTTGTG
AGAAGCGGTGGCCTTGCTGAGACTTTCTCTGCTCTTGTTGATCCGGAGGG
AAAGTACCTGTCGTACAAGATCCGAGAACTGACAGGTATAACTCCGCAAA
TCCTGGCGGCCAACAACGCGCGACCGTTCAACAAAGTGTGGCCACAATTT
GCATCATGGCTTACATCAGTTGGGACGAGCCGCGGGGGTATCGTATTGGC
TGCGCACAACGCACGCTTCGACCACAAATTCCTGATGGAGGAGATAGCTC
GGGCGGGCTTCAGCCGAACTGACAGGTATAACTCCGCAAATCCTGGCGGC
CAACAACGCGCGACCGTTCAACAAAGTGTGGCCACAATTTGCATCATGGC
TTACATCAGTTGGGACGAGCCGCGGGGGTATCGTATTGGCTGCGCACAAC
GCACGCTTCGACCACAAATTCCTGATGGAGGAGATAGCTCGGGCGGGCTT
CAGCCGCTCCACACTGGCAGAGCTCGGCATCGTGTCGATTGTTGACACGC
TCGCTGTGCTCCGAGACAAATCGATGTGGCGCCGGAGTGATGCCGACACA
GATCTGCTACCACGGCCGCGTAGCTTCAATCTCGGAGCTCCACACTGGCA
GAGCTCGGCATCGTGTCGATTGTTGACACGCTCGCTGTGCTCCGAGACAA
ATCGATGTGGCGCCGGAGTGATGCCGACACAGATCTGCTACCACGGCCGC
GTAGCTTCAATCTCGGAGAGCTATTCAAATACTTGCACGGGCGCGAAGAA
ATGCCCGGGGCACATACTGCTCTTGGTGATGTACGGGGCTTGGAACGTGT
TCTATCTGCGCCGGGCATAAGCCAGAGAGCTATTCAAATACTTGCACGGG
CGCGAAGAAATGCCCGGGGCACATACTGCTCTTGGTGATGTACGGGGCTT
GGAACGTGTTCTATCTGCGCCGGGCATAAGCCAGAGATGGCGGCTTATAG
CAAGCGAAAACCTCGCGTGCCAGATACCGGTACCGCAATGTGGACCGGCG
GGATTGGACGCCCAGAAACGCGATGCACCCAGCTCGGTCGTTGCTTCTGC
CGCCCCTGCGAAGAGAACATCGGCGAAGGACCCGCGTAAGGGGAAGGACG
GCAAAGCCGAATCGGCCCAAGTGGAACGCTCTAGAATGCGAGCGAGGGAG
TGGGCAAAGGAGCAGCAGGCGAAGAAGAAGGCACAAGCCGCTCAGAAGAA
AGCCTGAATGGCGGCTTATAGCAAGCGAAAACCTCGCGTGCCAGATACCG
GTACCGCAATGTGGACCGGCGGGATTGGACGCCCAGAAACGCGATGCACC
CAGCTCGGTCGTTGCTTCTGCCGCCCCTGCGAAGAGAACATCGGCGAAGG
ACCCGCGTAAGGGGAAGGACGGCAAAGCCGAATCGGCCCAAGTGGAACGC
TCTAGAATGCGAGCGAGGGAGTGGGCAAAGGAGCAGCAGGCGAAGAAGAA
GGCACAAGCCGCTCAGAAGAAAGCCTGA
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