prot_F-serratus_M_contig111.1051.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig111.1051.1
Unique Nameprot_F-serratus_M_contig111.1051.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length569
Homology
BLAST of mRNA_F-serratus_M_contig111.1051.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 5.820e-77
Identity = 202/476 (42.44%), Postives = 262/476 (55.04%), Query Frame = 0
Query:   22 RFRQLLGTGNWQS----VARVLESLKDEQCELNLRTWRSLMAVLAENGRGAEALMYLHDMKEAGVVADGVTLKHAATACAGGGDVDSALKILRTMNERRLRSVGAYNSVLLAIVNGKMRRQAGSGGRRESNYVEDEDRNERREHGDGVVRPRRGALSTDECDRAVALVDDMREAGAPPTVLTYNVLIAALARSRKPSREVLGLMAQMRLEGLAPDQYTFVGVLMALDS-KYRGFERSVALLEDAKKCLKGAALTPVYAAVMKNCGAEARWEKAAELLEEMRAVGVPRDQFTYCXXXXXXXXXXXXXXXXXXXXXXRREEGGGVEPNLVAYNTCIGACAFFGRP--ASPSSSPPSPFQKLPKGGETPGNRRRESPRGKLTEEQAEMVRAGDAALRLMDEMGEVGISPDVVTYGALMSALGPRGVSGADKVLDLFDALGKDDGITPNTVVYVCVIRAWGDKGDWRRAEEILEQMQHVH 490
            RF+ +LG     +    V RV++ L+DE  E NLRT+R  +A LA+ GRG EALMYL +M+ AGV AD   L H ATACA G  +D+AL ++R M  +       YN+++LAIVNG+      S  R  S++                   RR ALS  EC+ AV L+ +M+  GA PTV TYN+LIAALARSR+P  EVL L+ QMR +G+ PD YT+VGV+  +   K     R+V  LEDAK  L+G  L+ VY+AV+     +  WE A+ L++EM A  VPRD++TYC         XXXXXXXXXXXXX                      AFFGRP  A  ++   S F +       P + R    RG L+  QAE   AGD AL LM+EM   G+ PD++TYG+LMSAL PRG++GAD                          RA+GDKGDW RAE++L  MQ  H
Sbjct:    2 RFKAMLGMRRPNAAKVDVTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESAGVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSR--SSF-------------------RRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAV--LEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLR-------PTSTRENKGRG-LSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXX-RAYGDKGDWERAEQMLVGMQKEH 442          
BLAST of mRNA_F-serratus_M_contig111.1051.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 2.600e-74
Identity = 194/476 (40.76%), Postives = 249/476 (52.31%), Query Frame = 0
Query:   19 GEARFRQLLGTGNWQS----VARVLESLKDEQCELNLRTWRSLMAVLAENGRGAEALMYLHDMKEAGVVADGVTLKHAATACAGGGDVDSALKILRTMNERRLRSVGAYNSVLLAIVNGKMRRQAGSGGRRESNYVEDEDRNERREHGDGVVRPRRGALSTDECDRAVALVDDMREAGAPPTVLTYNVLIAALARSRKPSREVLGLMAQMRLEGLAPDQYTFVGVLMALDSKYRGFERSVALLEDAKKCLKGAALTPVYAAVMKNCGAEARWEKAAELLEEMRAVGVPRDQFTYCXXXXXXXXXXXXXXXXXXXXXXRREEGGGVEPNLVAYNTCIGACAFFGRPASPSSSPPSPFQKLPKGGETPGNRRRESPRGKLTEEQAEMVRAGDAALRLMDEMGEVGISPDVVTYGALMSALGPRGVSGADKVLDLFDALGKDDGITPNTVVYVCVIRAWGDKGDWRRAEEILEQMQHVH 490
            GE RF+ +LG     +    V RV++ L+DE  E NLRT+R  +A LA+ GRG EALMYL +M+  GV AD   L H ATACA G  +D+AL ++R M  +       YN+++LAIVNG+      S     SN+                   RR ALS  EC+ AV L+ +M+  GA PTV TYN+LIAAL RSR+P  EVL L+ QMR +G+ PD YT+VGV+  +    +      A+LEDAK  L+G  L+ VY+AV+     +  WE A+ L++EM A  VPRD++TYC         XXXXXXXXXXXXX                      AFFGRP                      N  RE+         AE   AGD AL LMDEM   G+ PD++TYG+LMSAL PRG +GA                           RA+GDKGDW+RAE++L  MQ  H
Sbjct:   81 GEMRFKAMLGMRRPNAAKVDVTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESVGVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSS---RSNF-------------------RRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMR-AVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXAFFGRPNKA------------------WNNNRETSSFMRPTSTAEASDAGDFALGLMDEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXX-RAYGDKGDWKRAEQMLVGMQKDH 511          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig111.1051.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI5.820e-7742.44PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE2.600e-7440.76PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 458..508
e-value: 2.6E-8
score: 33.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 533..559
e-value: 0.052
score: 13.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 401..433
e-value: 2.8E-4
score: 20.9
coord: 179..206
e-value: 0.0038
score: 17.3
coord: 292..353
e-value: 1.1E-7
score: 31.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 199..232
e-value: 2.9E-4
score: 18.8
coord: 461..495
e-value: 6.0E-4
score: 17.8
coord: 497..525
e-value: 5.8E-4
score: 17.9
coord: 53..85
e-value: 3.0E-5
score: 21.9
coord: 272..304
e-value: 2.4E-4
score: 19.1
coord: 306..334
e-value: 7.6E-6
score: 23.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 50..84
score: 9.657
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 530..564
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 269..303
score: 8.396
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..489
score: 8.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 304..334
score: 9.821
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 495..529
score: 9.756
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 85..119
score: 7.333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..458
score: 7.399
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 196..231
score: 10.183
IPR005158Bacterial transcriptional activator domainPFAMPF03704BTADcoord: 9..79
e-value: 1.6E-5
score: 25.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 401..569
e-value: 7.2E-40
score: 139.2
coord: 23..171
e-value: 1.6E-17
score: 65.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 172..249
e-value: 1.6E-11
score: 45.9
coord: 250..360
e-value: 1.7E-19
score: 71.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 478..559
coord: 100..350
coord: 274..495
coord: 27..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig111contigF-serratus_M_contig111:762165..783303 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig111.1051.1mRNA_F-serratus_M_contig111.1051.1Fucus serratus malemRNAF-serratus_M_contig111 762164..783303 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig111.1051.1 ID=prot_F-serratus_M_contig111.1051.1|Name=mRNA_F-serratus_M_contig111.1051.1|organism=Fucus serratus male|type=polypeptide|length=569bp
ARGKVQNDVRLHDRRYVEGEARFRQLLGTGNWQSVARVLESLKDEQCELN
LRTWRSLMAVLAENGRGAEALMYLHDMKEAGVVADGVTLKHAATACAGGG
DVDSALKILRTMNERRLRSVGAYNSVLLAIVNGKMRRQAGSGGRRESNYV
EDEDRNERREHGDGVVRPRRGALSTDECDRAVALVDDMREAGAPPTVLTY
NVLIAALARSRKPSREVLGLMAQMRLEGLAPDQYTFVGVLMALDSKYRGF
ERSVALLEDAKKCLKGAALTPVYAAVMKNCGAEARWEKAAELLEEMRAVG
VPRDQFTYCCVLNACKEAGKWEKALEFLGDMRREEGGGVEPNLVAYNTCI
GACAFFGRPASPSSSPPSPFQKLPKGGETPGNRRRESPRGKLTEEQAEMV
RAGDAALRLMDEMGEVGISPDVVTYGALMSALGPRGVSGADKVLDLFDAL
GKDDGITPNTVVYVCVIRAWGDKGDWRRAEEILEQMQHVHGLAPNRYCFS
AVIKALANGGQWERALQRLDEMRGLAMAPDHIVYASAIGACEKFGRWEEA
LKTLTKMVDDKTPRKALTW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR005158BTAD
IPR011990TPR-like_helical_dom_sf