mRNA_F-serratus_M_contig111.1051.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig111.1051.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI) HSP 1 Score: 271 bits (694), Expect = 5.820e-77 Identity = 202/476 (42.44%), Postives = 262/476 (55.04%), Query Frame = 1
Query: 64 RFRQLLGTGNWQS----VARVLESLKDEQCELNLRTWRSLMAVLAENGRGAEALMYLHDMKEAGVVADGVTLKHAATACAGGGDVDSALKILRTMNERRLRSVGAYNSVLLAIVNGKMRRQAGSGGRRESNYVEDEDRNERREHGDGVVRPRRGALSTDECDRAVALVDDMREAGAPPTVLTYNVLIAALARSRKPSREVLGLMAQMRLEGLAPDQYTFVGVLMALDS-KYRGFERSVALLEDAKKCLKGAALTPVYAAVMKNCGAEARWEKAAELLEEMRAVGVPRDQFTYCXXXXXXXXXXXXXXXXXXXXXXRREEGGGVEPNLVAYNTCIGACAFFGRP--ASPSSSPPSPFQKLPKGGETPGNRRRESPRGKLTEEQAEMVRAGDAALRLMDEMGEVGISPDVVTYGALMSALGPRGVSGADKVLDLFDALGKDDGITPNTVVYVCVIRAWGDKGDWRRAEEILEQMQHVH 1470
RF+ +LG + V RV++ L+DE E NLRT+R +A LA+ GRG EALMYL +M+ AGV AD L H ATACA G +D+AL ++R M + YN+++LAIVNG+ S R S++ RR ALS EC+ AV L+ +M+ GA PTV TYN+LIAALARSR+P EVL L+ QMR +G+ PD YT+VGV+ + K R+V LEDAK L+G L+ VY+AV+ + WE A+ L++EM A VPRD++TYC XXXXXXXXXXXXX AFFGRP A ++ S F + P + R RG L+ QAE AGD AL LM+EM G+ PD++TYG+LMSAL PRG++GAD RA+GDKGDW RAE++L MQ H
Sbjct: 2 RFKAMLGMRRPNAAKVDVTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESAGVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSR--SSF-------------------RRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAV--LEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLR-------PTSTRENKGRG-LSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXX-RAYGDKGDWERAEQMLVGMQKEH 442
BLAST of mRNA_F-serratus_M_contig111.1051.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE) HSP 1 Score: 265 bits (677), Expect = 2.600e-74 Identity = 194/476 (40.76%), Postives = 249/476 (52.31%), Query Frame = 1
Query: 55 GEARFRQLLGTGNWQS----VARVLESLKDEQCELNLRTWRSLMAVLAENGRGAEALMYLHDMKEAGVVADGVTLKHAATACAGGGDVDSALKILRTMNERRLRSVGAYNSVLLAIVNGKMRRQAGSGGRRESNYVEDEDRNERREHGDGVVRPRRGALSTDECDRAVALVDDMREAGAPPTVLTYNVLIAALARSRKPSREVLGLMAQMRLEGLAPDQYTFVGVLMALDSKYRGFERSVALLEDAKKCLKGAALTPVYAAVMKNCGAEARWEKAAELLEEMRAVGVPRDQFTYCXXXXXXXXXXXXXXXXXXXXXXRREEGGGVEPNLVAYNTCIGACAFFGRPASPSSSPPSPFQKLPKGGETPGNRRRESPRGKLTEEQAEMVRAGDAALRLMDEMGEVGISPDVVTYGALMSALGPRGVSGADKVLDLFDALGKDDGITPNTVVYVCVIRAWGDKGDWRRAEEILEQMQHVH 1470
GE RF+ +LG + V RV++ L+DE E NLRT+R +A LA+ GRG EALMYL +M+ GV AD L H ATACA G +D+AL ++R M + YN+++LAIVNG+ S SN+ RR ALS EC+ AV L+ +M+ GA PTV TYN+LIAAL RSR+P EVL L+ QMR +G+ PD YT+VGV+ + + A+LEDAK L+G L+ VY+AV+ + WE A+ L++EM A VPRD++TYC XXXXXXXXXXXXX AFFGRP N RE+ AE AGD AL LMDEM G+ PD++TYG+LMSAL PRG +GA RA+GDKGDW+RAE++L MQ H
Sbjct: 81 GEMRFKAMLGMRRPNAAKVDVTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESVGVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSS---RSNF-------------------RRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMR-AVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXAFFGRPNKA------------------WNNNRETSSFMRPTSTAEASDAGDFALGLMDEMKREGVEPDIITYGSLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXX-RAYGDKGDWKRAEQMLVGMQKDH 511 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig111.1051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig111.1051.1 >prot_F-serratus_M_contig111.1051.1 ID=prot_F-serratus_M_contig111.1051.1|Name=mRNA_F-serratus_M_contig111.1051.1|organism=Fucus serratus male|type=polypeptide|length=569bp ARGKVQNDVRLHDRRYVEGEARFRQLLGTGNWQSVARVLESLKDEQCELNback to top mRNA from alignment at F-serratus_M_contig111:762164..783303- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig111.1051.1 ID=mRNA_F-serratus_M_contig111.1051.1|Name=mRNA_F-serratus_M_contig111.1051.1|organism=Fucus serratus male|type=mRNA|length=21140bp|location=Sequence derived from alignment at F-serratus_M_contig111:762164..783303- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig111:762164..783303- >mRNA_F-serratus_M_contig111.1051.1 ID=mRNA_F-serratus_M_contig111.1051.1|Name=mRNA_F-serratus_M_contig111.1051.1|organism=Fucus serratus male|type=CDS|length=3414bp|location=Sequence derived from alignment at F-serratus_M_contig111:762164..783303- (Fucus serratus male)back to top |