prot_F-serratus_M_contig1020.287.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1020.287.1
Unique Nameprot_F-serratus_M_contig1020.287.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length285
Homology
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BLAST of mRNA_F-serratus_M_contig1020.287.1 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.640e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0 
Query:  243 SPIMWVIPNRTVHKIYSNLHPTDISQQVACVCQDWRQLAQDVP 285
            SPI+WVIP   V  + +NLHPTD++Q VACVCQDWRQLAQDVP
Sbjct:   10 SPILWVIPRGAVQNMMTNLHPTDLTQ-VACVCQDWRQLAQDVP 51
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7I7_9PHAE6.640e-1272.09F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 45..78
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 244..283

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:294748..317234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.287.1mRNA_F-serratus_M_contig1020.287.1Fucus serratus malemRNAF-serratus_M_contig1020 294748..317234 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1020.287.1 ID=prot_F-serratus_M_contig1020.287.1|Name=mRNA_F-serratus_M_contig1020.287.1|organism=Fucus serratus male|type=polypeptide|length=285bp
LALSSPPSGDSVGGRDARLGCRFNGERYTTRHYDIKTIMQAAKQLSELPK
EVMWRVLGFVDESHRGHCAAVDRRWSSVGKRRGNSSMGRGLRSRGSIPNE
LLVGLVLQFLDEPDNVDNGDRLRHIARVWAAYLAQWRVAAAAAAAATTAA
AGAAAAAAAAATTAAAAITAAPAGSGEPLGGIGLASYDEIPPILSISLGF
GFGPETEPGPLDSTGRLPNELLESMLDYLDEDMTINCASVARSPIMWVIP
NRTVHKIYSNLHPTDISQQVACVCQDWRQLAQDVP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf