prot_F-serratus_M_contig1013.218.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1013.218.1
Unique Nameprot_F-serratus_M_contig1013.218.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length133
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.120e-36
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 0 
Query:   20 DPRSMAQLLFGVVEPSPKECYRAFRLLEG-EGALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLREGAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV 133
            DPR MA+LLFGV +PSP++CY AFRLLEG +G L FKRRRDG YECRSREAV++A R++  ++A +AKK  F A LQ GL EG G RKTPL + D  E++++ML GL+ LA QSV
Sbjct:  220 DPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGGGYRKTPLVVGDFDEEQQEMLSGLEILAAQSV 334
[Close]
BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.630e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0 
Query:   20 DPRSMAQLLFGVVEPSPKECYRAFRLLEG-EGALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLREGAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV 133
            DPR MA+LLFGV +PSP++CY AFRLLEG +G L FKRRRDG YECRSREAV++A R++  ++A +AKK  F A LQ GL EG G RKTPL ++D  E++++ML GL+ LA QSV
Sbjct:  122 DPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGGGYRKTPLVVEDFDEEQQEMLSGLEILAAQSV 236
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU3_9PHAE2.120e-3661.74RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLK7_ECTSI4.630e-3661.74COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:125038..127240 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.218.1mRNA_F-serratus_M_contig1013.218.1Fucus serratus malemRNAF-serratus_M_contig1013 125038..127242 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1013.218.1 ID=prot_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=polypeptide|length=133bp
GDADGGGGLGGGGEKASVSDPRSMAQLLFGVVEPSPKECYRAFRLLEGEG
ALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLRE
GAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV
back to top