mRNA_F-serratus_M_contig1013.218.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1013.218.1
Unique NamemRNA_F-serratus_M_contig1013.218.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.120e-36
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:   58 DPRSMAQLLFGVVEPSPKECYRAFRLLEG-EGALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLREGAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV 399
            DPR MA+LLFGV +PSP++CY AFRLLEG +G L FKRRRDG YECRSREAV++A R++  ++A +AKK  F A LQ GL EG G RKTPL + D  E++++ML GL+ LA QSV
Sbjct:  220 DPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGGGYRKTPLVVGDFDEEQQEMLSGLEILAAQSV 334
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BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.630e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 1 
Query:   58 DPRSMAQLLFGVVEPSPKECYRAFRLLEG-EGALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLREGAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV 399
            DPR MA+LLFGV +PSP++CY AFRLLEG +G L FKRRRDG YECRSREAV++A R++  ++A +AKK  F A LQ GL EG G RKTPL ++D  E++++ML GL+ LA QSV
Sbjct:  122 DPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGGGYRKTPLVVEDFDEEQQEMLSGLEILAAQSV 236
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU3_9PHAE2.120e-3661.74RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLK7_ECTSI4.630e-3661.74COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:125038..127242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue7e-31
Seed eggNOG ortholog2880.D8LLK7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-04_005440.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size403
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.218.1prot_F-serratus_M_contig1013.218.1Fucus serratus malepolypeptideF-serratus_M_contig1013 125038..127240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.6403542-CDS-F-serratus_M_contig1013:125037..1252371622928811.6403542-CDS-F-serratus_M_contig1013:125037..125237Fucus serratus maleCDSF-serratus_M_contig1013 125038..125237 +
1690962583.1077547-CDS-F-serratus_M_contig1013:125037..1252371690962583.1077547-CDS-F-serratus_M_contig1013:125037..125237Fucus serratus maleCDSF-serratus_M_contig1013 125038..125237 +
1622928811.6540074-CDS-F-serratus_M_contig1013:126097..1262751622928811.6540074-CDS-F-serratus_M_contig1013:126097..126275Fucus serratus maleCDSF-serratus_M_contig1013 126098..126275 +
1690962583.1204655-CDS-F-serratus_M_contig1013:126097..1262751690962583.1204655-CDS-F-serratus_M_contig1013:126097..126275Fucus serratus maleCDSF-serratus_M_contig1013 126098..126275 +
1622928811.6748142-CDS-F-serratus_M_contig1013:127219..1272401622928811.6748142-CDS-F-serratus_M_contig1013:127219..127240Fucus serratus maleCDSF-serratus_M_contig1013 127220..127240 +
1690962583.128015-CDS-F-serratus_M_contig1013:127219..1272401690962583.128015-CDS-F-serratus_M_contig1013:127219..127240Fucus serratus maleCDSF-serratus_M_contig1013 127220..127240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1013.218.1

>prot_F-serratus_M_contig1013.218.1 ID=prot_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=polypeptide|length=133bp
GDADGGGGLGGGGEKASVSDPRSMAQLLFGVVEPSPKECYRAFRLLEGEG
ALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLRE
GAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV
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mRNA from alignment at F-serratus_M_contig1013:125038..127242+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1013.218.1 ID=mRNA_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=mRNA|length=2205bp|location=Sequence derived from alignment at F-serratus_M_contig1013:125038..127242+ (Fucus serratus male)
GGGGATGCTGATGGTGGCGGCGGTCTTGGTGGCGGCGGTGAGAAGGCCAG
CGTGAGCGACCCTCGAAGCATGGCACAGCTGCTATTTGGGGTGGTAGAGC
CAAGTCCCAAGGAGTGCTACAGGGCGTTTAGGCTGCTGGAGGGGGAGGGT
GCGCTGCGTTTCAAGCGCCGGCGAGATGGTCGCTATGAGTGTCGGTCGAG
GTGCGTGAGGCCCTCCGCCGTTGAGTTGATACACATGCAGATTTTGACGG
TGGTCTTAGTTAACAGTACGGTATCTCTCGGAGTATAAGTATGTACCAGG
TATGGTCTTTACTTAGAGCAGAGCATGAATCAACCGGGTAAGGTTGCCAA
TCCCGCTATTAATATTTAATAGTGGTCAGCTGAACAGAGAAAAATGATGT
TTCCCTGTCCCCGTTCGCGCCCGAGAATTTGATGTCGCGAGACGGGTTCG
GCCGTCTCGTCCCGCATCGGCCTGCTCATTTTCCACACTCAGTTGAACTA
CTGAGTCACGTGACTGAGTAGTTTAATAGTTTAGCCCTATTCTCTGTAGT
ACCAATGATTTCCATGGGGGTTGTGTGCTGTTGCTAAGATTCCCTACGCA
ATTATGTTTTGAAGATTGACGATATTTTCGGGTATGAAGGGCGTTCTCCT
GAGCGTGACTGGCGTAGTACTCCTTTTGCAACACGTACCTGTGTTAGGGC
ATAGTTATGTGTGATCAACCTTGCTGGGTATCGAATGGGAAGTCACGCCT
TGCGTAGTTATGAATCGAGAACTGTGTCAACGCGAGACGCAGCTGTAATA
ACAGTACAGTATTACCTAGCGGACGAAGAACTTTGAAGAAAGAACGGCAG
CTTCCTCTTTTGTCAGCCGTAGCACTCTATCCCCGCAAGCGCAACAGGCC
TTACGAAGGATTAGATATTTCCCGCTTCGCTCTTTTGGTTGGGAATTATC
GGCGAAAAGGCAGGCCTCCACACTAGTAGCGATCCCTGAAGTTTTCACAG
ACTGTTTGACGGCGTTCTGACGAAATCGCCGGGGGTGCGACGCGTCATTT
TCCTCGTTAGGGAGGCGGTGGATTTAGCGCTTCGAAAGATCGAGCTGGAC
AACGCGGCGAGGGCGAAGAAGGAGAAGTTCGCCGCTGGTCTTCAGGTGGG
CCTCCGCGAGGGAGCCGGGAGACGGAAGACGCCTCTTTCTTTGGATGATC
TCGCAGAGGACGAGCGGAAAATGCTAGAGGGGCTTAAGGTACGTCCGCGC
TCTCGTGGTGAATGCGATGACATGGAGCTGTGCGAAAGGGTTTCACAAAT
AAGTATTTAGCACTGAATTACGAGTAATTTTGTTGTTCTTGTGAATCACG
TTCAGCTCAAATCGATCCTTTGAACGACCCCCAAAGAGCCCCGCCTACCC
GGGCACGCTGAAGTGTTCCAGCATCGATGCCAAAAAGCTTTGGACGGAGG
TTGGGCGCAACAAAACGCTAAAGTATTCAAAACCCAAGTTGGCCTACCTA
GAGAGCACACCCAACTACAGTACCGCCCTGTTAATGCCAACACCTTGGCC
TCAAGAGTGGCTTCACTTTCGCTTCATTCTCACAAGCCATTCCCCCTGTA
CCTCTGGCCGGTGTACGCCTAGAATGTCCACCCCCCGCGTTCTGTCGCAG
CCTTCTCGCCGCAAAAAAACGTTGGCATTTTTCTTCTGTTTTTTCCACGT
ACGTGCGCACGACTCGAGAGAGGAGTTTTATCTCCCCTCCTATCAATAGT
ACGTACCAGGTACTCTTTTTCTTGGATCGAAACGGTTGGTTTTGACGACT
GAAGTTGATTACAGTACGAAGTAAACTTTATTTTCCATATTTCAGGAAGT
GGCGTTCTCCCCCCCCCCCCTCCCCATCCAAGTTTTCACTGTTAGAAAGT
GTAGCTTTTCGCCTGTCTTTTTTTGTGGAAATGGCTGAACTACCCTAAAC
ACACATACCTCCCTACAGGCAGTATTTTGTGGTTTTGCACGGTTGCTCCC
ATTTTGTTTTTGTTGTATTTTGGACGAACCAAGAGCGGGGTTGGGGTATA
CTCTGTATTACGGATCGGTCCACACGACGACAATATGAACAGCCATAGTA
ACGACAGCAATAACAATAACAATCATAGTAACGACGATGAGTCTGCTCGT
CCTGCTCTCGTGACGAGTACCCCCTCCCCCAGACGCTGGCCGTGCAGTCC
GTGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1013:125038..127242+

>mRNA_F-serratus_M_contig1013.218.1 ID=mRNA_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1013:125038..127242+ (Fucus serratus male)
GGGGATGCTGATGGTGGCGGCGGTCTTGGTGGCGGCGGTGAGAAGGCCAG
CGTGAGCGACCCTCGAAGCATGGCACAGCTGCTATTTGGGGTGGTAGAGC
CAAGTCCCAAGGAGTGCTACAGGGCGTTTAGGCTGCTGGAGGGGGAGGGT
GCGCTGCGTTTCAAGCGCCGGCGAGATGGTCGCTATGAGTGTCGGTCGAG
GGGGATGCTGATGGTGGCGGCGGTCTTGGTGGCGGCGGTGAGAAGGCCAG
CGTGAGCGACCCTCGAAGCATGGCACAGCTGCTATTTGGGGTGGTAGAGC
CAAGTCCCAAGGAGTGCTACAGGGCGTTTAGGCTGCTGGAGGGGGAGGGT
GCGCTGCGTTTCAAGCGCCGGCGAGATGGTCGCTATGAGTGTCGGTCGAG
GGAGGCGGTGGATTTAGCGCTTCGAAAGATCGAGCTGGACAACGCGGCGA
GGGCGAAGAAGGAGAAGTTCGCCGCTGGTCTTCAGGTGGGCCTCCGCGAG
GGAGCCGGGAGACGGAAGACGCCTCTTTCTTTGGATGATCTCGCAGAGGA
CGAGCGGAAAATGCTAGAGGGGCTTAAGGGAGGCGGTGGATTTAGCGCTT
CGAAAGATCGAGCTGGACAACGCGGCGAGGGCGAAGAAGGAGAAGTTCGC
CGCTGGTCTTCAGGTGGGCCTCCGCGAGGGAGCCGGGAGACGGAAGACGC
CTCTTTCTTTGGATGATCTCGCAGAGGACGAGCGGAAAATGCTAGAGGGG
CTTAAGACGCTGGCCGTGCAGTCCGTGACGCTGGCCGTGCAGTCCGTG
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