mRNA_F-serratus_M_contig990.21214.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig990.21214.1
Unique NamemRNA_F-serratus_M_contig990.21214.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig990.21214.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.430e-79
Identity = 129/178 (72.47%), Postives = 145/178 (81.46%), Query Frame = 1 
Query:    1 MVRFIV-ASAVFSLLLGSSTVDASKKK----IYFTVYERQSDDGPRHSPLFNLPVG-GEEGQFPSKMVLFNNDLYGSESGLINEDHGDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDFKLKR 516
            MVRFIV AS  F+LLLG +TV+AS+ K    + FTV+ERQSDDGPRHSPLF LPV   E+ ++PSKMVLFNNDLYGSE  LI+E    ++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFDA  G VLPS LAVTGGTG+Y    G   +SAGPAE+FPSLQFDFKLK+
Sbjct:    1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAEDG-VLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLKK 177
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BLAST of mRNA_F-serratus_M_contig990.21214.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 8.440e-56
Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:  181 MVLFNNDLYGSESGLINEDHGDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDFKLKR 516
            MVLFNNDLYGSE  LI+ED  +++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFD   G VLPS LAVTGGTG+Y   QG   +SAGPAE+FPSLQFDFKLKR
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDG-VLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLKR 111
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BLAST of mRNA_F-serratus_M_contig990.21214.1 vs. uniprot
Match: A0A6N6VM22_9HYPH (Allene-oxide cyclase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VM22_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 1.120e-5
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  154 GEEGQFPSKMVLFNNDLYGSESGLINEDHGDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDF 504
            G +G     ++ F N+++       ++ + + VG + G+CV TVA + +  EC +T     G +T  GPF  DA       S+LA+TGG+G+YA  +G+  L A  A+     ++DF
Sbjct:   52 GAKGDSNGDVLTFANEVF-------DKSNKEKVGTDNGYCVRTVAGKAW--ECIWTLSLAKGQITVEGPF-LDAGD-----SMLAITGGSGEYAHARGDMLLHARNAQ---GSEYDF 150
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BLAST of mRNA_F-serratus_M_contig990.21214.1 vs. uniprot
Match: F1ZAY6_9SPHN (Allene-oxide cyclase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 TaxID=983920 RepID=F1ZAY6_9SPHN)

HSP 1 Score: 51.6 bits (122), Expect = 3.650e-5
Identity = 43/153 (28.10%), Postives = 69/153 (45.10%), Query Frame = 1 
Query:    1 MVRFIVASAVFSLLLGSSTVDASKKKIYFTVYERQSDDGPRHSPLFNLPVGGEEGQFPSKMVLFNNDLYGSESGLINEDHGDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAAL 459
            M+R ++ S   +L + +    AS  ++   + ER   D      + +L  GG        +  F N +Y + + +        +G++QG+CV  V   G   EC +T   + G ++ +GP    A S       LAVTGGTG YAA  GE  +
Sbjct:    1 MLRALILSPALALAVAAPAHAASPVEMKIDLVERAETD------VVSLH-GGSAADNVGDLATFTNPIYDAANQVK-------LGHDQGYCVRLVV--GKTMECHWTLFLEKGQISVDGPVYDGADS------TLAVTGGTGLYAAVHGEVKI 131
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE1.430e-7972.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI8.440e-5679.46Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
A0A6N6VM22_9HYPH1.120e-531.62Allene-oxide cyclase n=1 Tax=Parvibaculum sediment... [more]
F1ZAY6_9SPHN3.650e-528.10Allene-oxide cyclase n=1 Tax=Novosphingobium nitro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig990contigF-serratus_M_contig990:315859..317840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size522
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig990.21214.1prot_F-serratus_M_contig990.21214.1Fucus serratus malepolypeptideF-serratus_M_contig990 315859..317840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932787.9447515-CDS-F-serratus_M_contig990:315858..3159301622932787.9447515-CDS-F-serratus_M_contig990:315858..315930Fucus serratus maleCDSF-serratus_M_contig990 315859..315930 -
1690964475.7285242-CDS-F-serratus_M_contig990:315858..3159301690964475.7285242-CDS-F-serratus_M_contig990:315858..315930Fucus serratus maleCDSF-serratus_M_contig990 315859..315930 -
1622932787.9630861-CDS-F-serratus_M_contig990:316929..3171151622932787.9630861-CDS-F-serratus_M_contig990:316929..317115Fucus serratus maleCDSF-serratus_M_contig990 316930..317115 -
1690964475.7386312-CDS-F-serratus_M_contig990:316929..3171151690964475.7386312-CDS-F-serratus_M_contig990:316929..317115Fucus serratus maleCDSF-serratus_M_contig990 316930..317115 -
1622932787.9814014-CDS-F-serratus_M_contig990:317576..3178401622932787.9814014-CDS-F-serratus_M_contig990:317576..317840Fucus serratus maleCDSF-serratus_M_contig990 317577..317840 -
1690964475.755007-CDS-F-serratus_M_contig990:317576..3178401690964475.755007-CDS-F-serratus_M_contig990:317576..317840Fucus serratus maleCDSF-serratus_M_contig990 317577..317840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig990.21214.1

>prot_F-serratus_M_contig990.21214.1 ID=prot_F-serratus_M_contig990.21214.1|Name=mRNA_F-serratus_M_contig990.21214.1|organism=Fucus serratus male|type=polypeptide|length=174bp
MVRFIVASAVFSLLLGSSTVDASKKKIYFTVYERQSDDGPRHSPLFNLPV
GGEEGQFPSKMVLFNNDLYGSESGLINEDHGDIVGYNQGHCVETVASEGF
IAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGE
AALSAGPAEDFPSLQFDFKLKRL*
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mRNA from alignment at F-serratus_M_contig990:315859..317840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig990.21214.1 ID=mRNA_F-serratus_M_contig990.21214.1|Name=mRNA_F-serratus_M_contig990.21214.1|organism=Fucus serratus male|type=mRNA|length=1982bp|location=Sequence derived from alignment at F-serratus_M_contig990:315859..317840- (Fucus serratus male)
ATGGTGCGGTTCATTGTTGCATCTGCGGTATTCTCTCTTCTTCTGGGCTC
TTCGACGGTGGATGCCTCAAAGAAAAAAATATATTTTACTGTCTACGAGA
GGCAGAGCGATGACGGTCCTCGCCACAGTCCGCTCTTTAATCTCCCTGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGGCGACATTG
TCGGGTACAACCAGGTGCGCCAGTAGAACCTGAAGCTAGAGGATTGTGTA
CAATATGAAAAAAGAAACAGAAAATAAAATTAAAGCAAACATTTCGTTGG
TAGGCAGCGCTCCTAGCCCTTGCGGTTCACGACGGTCTCGTATACTACAC
TGCATCCTTCCTGACCTTGACCGGTATCATTCATCACGAGACGATATATG
AGCCCTCTCGTGAAAAACGCGATTGCTTCGTCACGGAAAACGTTCCTCGG
AAGACTCAAGCGTAAGTAGTGTAGTAGGCTATAAACGAAATGACATGAAG
CTTGTCAGAAATCGATCTGTCAAATAAAATCGAAAAAAATTATGAACACA
CTATGAATAGACAAGGGCCATCAAACATGAAAATGCAAGTACTGGAAAGT
AGGTCAATACTCAATGAACGCCATTTTTTTTGCATCTCTTAAAACGCTGA
GGCTACGACATTACTTACGTGGCAGGGTCACTGTGTCGAGACTGTGGCTT
CGGAAGGTTTTATCGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGC
TCGCTCACGGCGAACGGCCCGTTCAACTTCGATGCCAGTTCTGGGAGCGT
TCTTCCCTCTGTACTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCTA
CCCAGGGAGAGGTGGATAACCAGGGTTACACCCTCACGTTGGTTGATCGT
TGTTGAAAGTTATATCAAAAACATTGCTGAGCAAATCGTTGTTTACAAGA
AAATGAGTTTCCTTTCGTCTGACATGGCCCACGGCTCAACCTCCTCTATC
CTAACCCGAAACGTAAACAGACTGCCTTCGTCACCCCCTCTAAGTGACTT
CTTCTGTCGATGTCTATGCTGATATCTTGAGAGGAATATTCTTACGCAGT
TTGGTCGGAGGTTTCCGACCGATAAAAACCTATTATAGCCAGTAAATCCG
GCAATCAATGGTCATTGGGACACTCGTGCGTCGCATTCCAACGTCTGGAG
TTTACCGCTGTCGACGCACGTCAGTTCGAGAACTTGCGCGTTACTCGACA
AAATCTGGCGGACGGCACATATAACGACCCTGTAGATATGAATCAACGAC
TGCATGACACTCGAAATATGTCGGTGCCGTGCCCGAGATTCCACCGTGAG
GTCGATAGTACCTCTGGGTAATACGAGGGGGGCGATAATTTTGGAGGCAA
AGCTTATGAATAGATATCTAGGGTACCGTGTGGCACTCAAGAAATTCACG
AGATTTGATCGTGAGACTTGCTCCTGGTGTCCCAAAACACCCATGCTCGA
TAACACGATTAAAGGTCCATGACCCCAGGTAGGACCGGCTTGGGTAGATA
GGAACAACTTTACCTGCGAGTCGCCGCCGCAAATCAGTGTTTGTAAAGCA
CCAGCCGGTTTTGACGTTTTTTGGCTGGAAATCGAACCCAGGGGTCTTCC
GAGCGCTTAACGTAGCTTATCTCAGATATCCGCTCTTGAAATAGTAGATT
TCTCTGGGGTGAAAGGTGTGTGTAGTAATTAGAATATACCTCGTACGTTT
TCCTTTCGGTTTAGTATATTATTTTGGCTCTTCACCTTTTACAACTCCTG
TAAATCCAGCCTGTAACAGTTCACAACACGGCCTAACCTACTGTCCCTTC
CTGCTGACAGGCTGCTCTGTCTGCCGGACCTGCCGAAGACTTCCCATCCT
TGCAGTTCGACTTCAAGCTCAAGAGGCTTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig990:315859..317840-

>mRNA_F-serratus_M_contig990.21214.1 ID=mRNA_F-serratus_M_contig990.21214.1|Name=mRNA_F-serratus_M_contig990.21214.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig990:315859..317840- (Fucus serratus male)
ATGGTGCGGTTCATTGTTGCATCTGCGGTATTCTCTCTTCTTCTGGGCTC
TTCGACGGTGGATGCCTCAAAGAAAAAAATATATTTTACTGTCTACGAGA
GGCAGAGCGATGACGGTCCTCGCCACAGTCCGCTCTTTAATCTCCCTGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGGCGACATTG
TCGGGTACAACCAGATGGTGCGGTTCATTGTTGCATCTGCGGTATTCTCT
CTTCTTCTGGGCTCTTCGACGGTGGATGCCTCAAAGAAAAAAATATATTT
TACTGTCTACGAGAGGCAGAGCGATGACGGTCCTCGCCACAGTCCGCTCT
TTAATCTCCCTGTGGGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTG
CTCTTCAACAACGACCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGA
TCACGGCGACATTGTCGGGTACAACCAGGGTCACTGTGTCGAGACTGTGG
CTTCGGAAGGTTTTATCGCCGAATGCTTCTTCACGTACGTGTTCGACGAC
GGCTCGCTCACGGCGAACGGCCCGTTCAACTTCGATGCCAGTTCTGGGAG
CGTTCTTCCCTCTGTACTAGCCGTCACTGGGGGCACCGGGGATTACGCTG
CTACCCAGGGAGAGGGTCACTGTGTCGAGACTGTGGCTTCGGAAGGTTTT
ATCGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGCTCGCTCACGGC
GAACGGCCCGTTCAACTTCGATGCCAGTTCTGGGAGCGTTCTTCCCTCTG
TACTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCTACCCAGGGAGAG
GCTGCTCTGTCTGCCGGACCTGCCGAAGACTTCCCATCCTTGCAGTTCGA
CTTCAAGCTCAAGAGGCTTTGAGCTGCTCTGTCTGCCGGACCTGCCGAAG
ACTTCCCATCCTTGCAGTTCGACTTCAAGCTCAAGAGGCTTTGA
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