mRNA_F-serratus_M_contig966.20978.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE) HSP 1 Score: 202 bits (513), Expect = 4.220e-60 Identity = 120/128 (93.75%), Postives = 124/128 (96.88%), Query Frame = 1 Query: 13 FGGSRGGGRXXXXXXXXXXXXXXXXXXXXXYDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 396 GGSRGGGRXXXXXXXXXXXXXXXXXX YDDGPPDEIVELGEF+HPCEDEMVYKLTNSMVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNASSFK+GDK+FIGTQKLLPVSRFTGEG Sbjct: 1 MGGSRGGGRXXXXXXXXXXXXXXXXXX---YDDGPPDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK) HSP 1 Score: 171 bits (433), Expect = 5.960e-49 Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEGGGG 405 YD+GPP+ +VELG+F+HPCE EMVYKLTN MVPYFNAGAYL+NKTKIGKVDEI GPVN +MFTVKPDTGV A+SFK GDKV+IGT KLLP+SRFTG G G Sbjct: 13 YDEGPPEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXG 113
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA) HSP 1 Score: 169 bits (428), Expect = 5.470e-48 Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTG 390 YD+GPP E+VELG F+H CE EMVYKLTNSMVPYFNAGAYL+NKTKIGKVDEILGP+NG FTVKPD GVNA+SFK GDKVFIG KLLP+SRFTG Sbjct: 33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.190e-45 Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 396 Y++GPPDE+VELG F+HPCE EMVYKL ++MVPYFNAGA+L +KTK+GKVDEI GP+N +MFTVKPD GV+A+SFK+ DKVF+ T+KLLP+SRFTGEG Sbjct: 39 YEEGPPDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV) HSP 1 Score: 155 bits (393), Expect = 8.000e-42 Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 396 YD+GPP +VELG FIH CEDEMVYK TN VPYFNAG YL+NKTKIGKVDEILG +N VMFTVKPD GV+A SFK+GDKV+I KLLP+SRFT +G Sbjct: 39 YDEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA) HSP 1 Score: 150 bits (378), Expect = 3.530e-40 Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG---GGG 405 +++GPP +VELG F+H CEDEMVYK T+ VPYFNAG YL+NKTKIGK+DEILG +N VMFTVKPD+GV A SFKSGDKV+I KLLP+SRFT +G GGG Sbjct: 40 FEEGPPATVVELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGG 143
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA) HSP 1 Score: 150 bits (379), Expect = 4.750e-40 Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG---GGG 405 +++GPP +VELG F+H CEDEMVYK T+ VPYFNAGA+L+NKTKIGKVDEILG +N VMFTVKPD GV A SFK+GDKV+I KLLP+SRFT +G GGG Sbjct: 38 FEEGPPATVVELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQGKSSGGG 141
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA) HSP 1 Score: 149 bits (376), Expect = 3.860e-39 Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 Query: 109 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 387 +GPP +VELG F+H CE+EMVYK TN VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SFK+GDKVFI KLLP+SRFT Sbjct: 49 EGPPAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFT 141
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A1V9ZDJ8_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDJ8_9STRA) HSP 1 Score: 152 bits (384), Expect = 4.750e-39 Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 1 Query: 103 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 396 +++GPP +VELG F+H CEDEMVYK TN VPYFNAG YL+NKTKIGKVDEILG +N VMFTVKPD GV+A SFK+GDKV+I KLLP+SRFT +G Sbjct: 35 FEEGPPATVVELGVFLHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 132
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: K3WS95_GLOUD (H/ACA ribonucleoprotein complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS95_GLOUD) HSP 1 Score: 148 bits (373), Expect = 8.430e-39 Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 Query: 109 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 387 +GPP +VELG F+H CE+EMVYK TN VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SFK+GDKVFI KLLP+SRFT Sbjct: 45 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSAASFKAGDKVFISPDKLLPLSRFT 137 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig966.20978.1 >prot_F-serratus_M_contig966.20978.1 ID=prot_F-serratus_M_contig966.20978.1|Name=mRNA_F-serratus_M_contig966.20978.1|organism=Fucus serratus male|type=polypeptide|length=185bp MGGRFGARGGRGGRGGRGGYDDGPPDEIVELGEFIHPCEDEMVYKLTNSMback to top mRNA from alignment at F-serratus_M_contig966:51486..53938+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig966.20978.1 ID=mRNA_F-serratus_M_contig966.20978.1|Name=mRNA_F-serratus_M_contig966.20978.1|organism=Fucus serratus male|type=mRNA|length=2453bp|location=Sequence derived from alignment at F-serratus_M_contig966:51486..53938+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig966:51486..53938+ >mRNA_F-serratus_M_contig966.20978.1 ID=mRNA_F-serratus_M_contig966.20978.1|Name=mRNA_F-serratus_M_contig966.20978.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig966:51486..53938+ (Fucus serratus male)back to top |