prot_F-serratus_M_contig966.20978.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig966.20978.1
Unique Name	prot_F-serratus_M_contig966.20978.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	185

Homology

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 6.800e-63
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 117
            YDDGPPDEIVELGEF+HPCEDEMVYKLTNSMVPYFNAGAYLDNKTK+GKVDEILGPVNGVMFTVKPDTGVNASSFK+GDK+FIGTQKLLPVSRFTGEG
Sbjct:   28 YDDGPPDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 171 bits (433), Expect = 5.650e-52
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEGGGG 120
            YD+GPP+ +VELG+F+HPCE EMVYKLTN MVPYFNAGAYL+NKTKIGKVDEI GPVN +MFTVKPDTGV A+SFK GDKV+IGT KLLP+SRFTG G  G
Sbjct:   13 YDEGPPEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXG 113

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.380e-51
Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTG 115
            YD+GPP E+VELG F+H CE EMVYKLTNSMVPYFNAGAYL+NKTKIGKVDEILGP+NG  FTVKPD GVNA+SFK GDKVFIG  KLLP+SRFTG
Sbjct:   33 YDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.300e-48
Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 117
            Y++GPPDE+VELG F+HPCE EMVYKL ++MVPYFNAGA+L +KTK+GKVDEI GP+N +MFTVKPD GV+A+SFK+ DKVF+ T+KLLP+SRFTGEG
Sbjct:   39 YEEGPPDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV)

HSP 1 Score: 155 bits (393), Expect = 1.060e-44
Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 117
            YD+GPP  +VELG FIH CEDEMVYK TN  VPYFNAG YL+NKTKIGKVDEILG +N VMFTVKPD GV+A SFK+GDKV+I   KLLP+SRFT +G
Sbjct:   39 YDEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.390e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG---GGG 120
            +++GPP  +VELG F+H CEDEMVYK T+  VPYFNAG YL+NKTKIGK+DEILG +N VMFTVKPD+GV A SFKSGDKV+I   KLLP+SRFT +G   GGG
Sbjct:   40 FEEGPPATVVELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGG 143

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 7.180e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG---GGG 120
            +++GPP  +VELG F+H CEDEMVYK T+  VPYFNAGA+L+NKTKIGKVDEILG +N VMFTVKPD GV A SFK+GDKV+I   KLLP+SRFT +G   GGG
Sbjct:   38 FEEGPPATVVELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQGKSSGGG 141

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A5D6Y826_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y826_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.990e-42
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SFK+GDKVFI   KLLP+SRFT
Sbjct:   49 EGPPAHVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSATSFKAGDKVFISPDKLLPLSRFT 141

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: A0A1V9ZDJ8_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDJ8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 6.780e-42
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 0

Query:   20 YDDGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFTGEG 117
            +++GPP  +VELG F+H CEDEMVYK TN  VPYFNAG YL+NKTKIGKVDEILG +N VMFTVKPD GV+A SFK+GDKV+I   KLLP+SRFT +G
Sbjct:   35 FEEGPPATVVELGVFLHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 132

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BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Match: K3WS95_GLOUD (H/ACA ribonucleoprotein complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS95_GLOUD)

HSP 1 Score: 148 bits (373), Expect = 1.350e-41
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 0

Query:   22 DGPPDEIVELGEFIHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKVFIGTQKLLPVSRFT 114
            +GPP  +VELG F+H CE+EMVYK TN  VPYFNAGA+L+NKT+IGKVDEILG +N VMFTVKPDTGV+A+SFK+GDKVFI   KLLP+SRFT
Sbjct:   45 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGNINEVMFTVKPDTGVSAASFKAGDKVFISPDKLLPLSRFT 137

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig966.20978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KV55_9PHAE	6.800e-63	95.92	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec...	[more]
A0A7S3USE8_HETAK	5.650e-52	79.21	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A835YSJ1_9STRA	5.380e-51	82.29	H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr...	[more]
A0A7S2UZ93_9STRA	1.300e-48	73.47	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
T0QNK0_SAPDV	1.060e-44	74.49	H/ACA ribonucleoprotein complex subunit n=2 Tax=Sa...	[more]
A0A6A4XZY0_9STRA	5.390e-43	69.23	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A024U6J9_9STRA	7.180e-43	69.23	H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap...	[more]
A0A5D6Y826_9STRA	5.990e-42	74.19	H/ACA ribonucleoprotein complex subunit n=1 Tax=Py...	[more]
A0A1V9ZDJ8_9STRA	6.780e-42	71.43	H/ACA ribonucleoprotein complex subunit n=1 Tax=Th...	[more]
K3WS95_GLOUD	1.350e-41	74.19	H/ACA ribonucleoprotein complex subunit n=1 Tax=Gl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 15..114 e-value: 3.0E-32 score: 111.5
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 24..114 e-value: 2.8E-36 score: 125.2
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 3..183
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 3..183
None	No IPR available	PRODOM	PD020235		coord: 30..113 e-value: 1.0E-25 score: 287.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 29..102

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig966	contig	F-serratus_M_contig966:51531..52584 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig966.20978.1	mRNA_F-serratus_M_contig966.20978.1	Fucus serratus male	mRNA	F-serratus_M_contig966 51486..53938 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig966.20978.1 ID=prot_F-serratus_M_contig966.20978.1|Name=mRNA_F-serratus_M_contig966.20978.1|organism=Fucus serratus male|type=polypeptide|length=185bp
MGGRFGARGGRGGRGGRGGYDDGPPDEIVELGEFIHPCEDEMVYKLTNSM
VPYFNAGAYLDNKTKIGKVDEILGPVNGVMFTVKPDTGVNASSFKSGDKV
FIGTQKLLPVSRFTGEGGGGGGRSGGRGGGRGGGRGGGRGGGRGGRAGGR
GGFASPRGRGGMRGGRGGFSSSRGRGGSRGRGRF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR009000	Transl_B-barrel_sf