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Homology
BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE) HSP 1 Score: 242 bits (617), Expect = 5.820e-79 Identity = 130/177 (73.45%), Postives = 145/177 (81.92%), Query Frame = 1
Query: 1 MVRFIV-ASAVFALLLGFSTVDASKE----NIYFTVYERQSDDGPRHSPLFNLPVG-GEEGQFPSKMVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDFKLK 513
MVRFIV AS FALLLGF+TV+AS+ ++ FTV+ERQSDDGPRHSPLF LPV E+ ++PSKMVLFNNDLYGSE LI+E D ++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFDA VLPS LAVTGGTG+Y G +SAGPAE+FPSLQFDFKLK
Sbjct: 1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAED-GVLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLK 176
BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI) HSP 1 Score: 177 bits (448), Expect = 3.830e-54 Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 181 MVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDFKLK 513
MVLFNNDLYGSE LI+ED ++++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFD VLPS LAVTGGTG+Y QG +SAGPAE+FPSLQFDFKLK
Sbjct: 1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVED-GVLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLK 110
BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Match: A0A6N6VM22_9HYPH (Allene-oxide cyclase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VM22_9HYPH) HSP 1 Score: 52.4 bits (124), Expect = 2.970e-5 Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 154 GEEGQFPSKMVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDF 504
G +G ++ F N+++ ++ + + VG + G+CV TVA + + EC +T G +T GPF DA S+LA+TGG+G+YA +G+ L A A+ ++DF
Sbjct: 52 GAKGDSNGDVLTFANEVF-------DKSNKEKVGTDNGYCVRTVAGKAW--ECIWTLSLAKGQITVEGPF-LDAGD-----SMLAITGGSGEYAHARGDMLLHARNAQ---GSEYDF 150
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 3 |
Model size | 577 |
Cds size | 522 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932723.4849548-UTR-F-serratus_M_contig955:117666..117721 | 1622932723.4849548-UTR-F-serratus_M_contig955:117666..117721 | Fucus serratus male | UTR | F-serratus_M_contig955 117667..117721 - |
1690964441.3694928-UTR-F-serratus_M_contig955:117666..117721 | 1690964441.3694928-UTR-F-serratus_M_contig955:117666..117721 | Fucus serratus male | UTR | F-serratus_M_contig955 117667..117721 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932723.5000224-CDS-F-serratus_M_contig955:117721..117793 | 1622932723.5000224-CDS-F-serratus_M_contig955:117721..117793 | Fucus serratus male | CDS | F-serratus_M_contig955 117722..117793 - |
1690964441.381443-CDS-F-serratus_M_contig955:117721..117793 | 1690964441.381443-CDS-F-serratus_M_contig955:117721..117793 | Fucus serratus male | CDS | F-serratus_M_contig955 117722..117793 - |
1622932723.5143232-CDS-F-serratus_M_contig955:118787..118973 | 1622932723.5143232-CDS-F-serratus_M_contig955:118787..118973 | Fucus serratus male | CDS | F-serratus_M_contig955 118788..118973 - |
1690964441.3971305-CDS-F-serratus_M_contig955:118787..118973 | 1690964441.3971305-CDS-F-serratus_M_contig955:118787..118973 | Fucus serratus male | CDS | F-serratus_M_contig955 118788..118973 - |
1622932723.5327947-CDS-F-serratus_M_contig955:119421..119685 | 1622932723.5327947-CDS-F-serratus_M_contig955:119421..119685 | Fucus serratus male | CDS | F-serratus_M_contig955 119422..119685 - |
1690964441.4087484-CDS-F-serratus_M_contig955:119421..119685 | 1690964441.4087484-CDS-F-serratus_M_contig955:119421..119685 | Fucus serratus male | CDS | F-serratus_M_contig955 119422..119685 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig955.20897.1 >prot_F-serratus_M_contig955.20897.1 ID=prot_F-serratus_M_contig955.20897.1|Name=mRNA_F-serratus_M_contig955.20897.1|organism=Fucus serratus male|type=polypeptide|length=174bp
MVRFIVASAVFALLLGFSTVDASKENIYFTVYERQSDDGPRHSPLFNLPV GGEEGQFPSKMVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGF IAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGE AALSAGPAEDFPSLQFDFKLKGL* back to topmRNA from alignment at F-serratus_M_contig955:117667..119685- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig955.20897.1 ID=mRNA_F-serratus_M_contig955.20897.1|Name=mRNA_F-serratus_M_contig955.20897.1|organism=Fucus serratus male|type=mRNA|length=2019bp|location=Sequence derived from alignment at F-serratus_M_contig955:117667..119685- (Fucus serratus male) ATGGTGCGGTTCATTGTTGCATCGGCGGTATTCGCTCTTCTTCTGGGCTT
TTCGACGGTGGATGCCTCAAAGGAGAATATATATTTTACTGTCTACGAGA
GGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTTAATCTCCCTGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGACGATATTG
TCGGGTACAACCAGGTGCGCCAGTAGAACCTGAAGCTAGAGGATCGTGTA
CAATATGAAAAAAGAATCAGAAAAGAAAATTAGAGCAAATATTTCGTTGG
TAGGCAGCGCTCCTAGACCTTGGTTCGTTACGGTCTCTTATACTACACTG
TATCCTTCCTGACCTTGACCGGTATCATTCATCACGAGACGACAAATGAG
CTCTCTCATGAAAAACGCGATTGTTTCGTCACGGAAAACGTTCCTCGGAA
GACTCAAGCGTAAGTAGTGTAGGCTATAAACGAAATGACGTGAAGCTTGT
CAGAAATTGAACTGTCAAATAAAGTCGAAAACAATTATGAACACACCAGA
CAAGGGCCATGAAACATGAAAATACAAGTACTGGAAAGTAGGTCAATACT
CAATTAACACCATTTGTTTTTTCATCTCTTAAAACTCTGAGGCCACGTTA
TTTACGTGGCAGGGTCACTGTGTCGAGACTGTGGCTTCGGAAGGTTTTAT
CGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGCTCGCTCACGGCGA
ACGGCCCGTTCAACTTCGATGCCAGTTCTAGGAGCGTTCTTCCCTCTGTA
CTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCCACCCAGGGAGAGGT
GGATAACCAGGGTTACACCCTCACGTTGATTGATCGTTGTTAAAAGTTTA
TATCAAAAACATTGCTGAGCAAATCGTTGTTTACAAGAAAAGGAGTTTCC
TTTCGTCTGACATGGCCCACGGCTCAACCTCCTCTATCCTAATCCGAAAC
ATAAACAGACTGCCTTCGTCACCCCCTCTAAGTGGCTTCTGTCGATGTCT
ATGTTGATATCTTGATAGGAATACTCTTACGCAGTTTGGTCGGAGGTTTC
CGACCGATGAAAACCTACTATAGCCAGTAAATCCGGCAATCAATGGTCAT
TGGAACACTCGTGTGTTGCACTCCAACGTCTGGCGTTTACCGCTGTCGAC
GCACGTCAGTTCGAGAACTTGTGCGTTACTCGACAATATCTGGTGGACGG
CACATATAACGACCCTGTAGATATGAACCGACGTCTGCATGACCCTCGAA
ATATGTCGGTGCCGTACCCGAGATACCACCGTGAGGTCGATAGTACCTCT
GGGTAATACGAAGGGGGCCATAACTTTGGAGGCAAAGCTTATGAATATAT
ATCTAGGGTACCGTGTGGCACTCAAGAGATCCACGAGATTTGATCGTGAC
ACTTGCTCTTGGTGTCCCAAAACACCAATGCTCGATAATACGATTAAAGG
TTCATGACCCCAGGTAGGACCGGCTTGGGCAGACAGGAACAACATTACCT
GCGAGTCGCCGCAAATCAGTGTTTGTAAAGCACTAGTCGGTTTTGACGTT
TCTTGGCTGGAAATCGAACCCAGGGGTCTTCCGAGCGCTTAACGTAGCTT
ATCTCAGATATCCGCTCTTGAAATAGTAGATTTCTCTGGGGTGAAAGTTG
TGTGTAGTAATTAGAATATACCTCGTACGTTTTCCTTTTGGTTTAGTATA
TTATTTTGGCTCTTTACCTTTTACAACTCCTGTAAATCCAGCCTGTAACA
GTTCACAACACGGCCTAACCTACTGTCCCTTCCTGCTGACAGGCTGCTCT
GTCTGCCGGACCTGCCGAAGACTTCCCATCCTTGCAGTTCGACTTCAAGC
TCAAGGGGCTTTGAAGGAAATAGGTGGCTGTGGTCGTGGTGCGGGCCCAT
CAATCAAGTACGATCAGGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig955:117667..119685- >mRNA_F-serratus_M_contig955.20897.1 ID=mRNA_F-serratus_M_contig955.20897.1|Name=mRNA_F-serratus_M_contig955.20897.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig955:117667..119685- (Fucus serratus male) ATGGTGCGGTTCATTGTTGCATCGGCGGTATTCGCTCTTCTTCTGGGCTT TTCGACGGTGGATGCCTCAAAGGAGAATATATATTTTACTGTCTACGAGA GGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTTAATCTCCCTGTG GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA CCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGACGATATTG TCGGGTACAACCAGATGGTGCGGTTCATTGTTGCATCGGCGGTATTCGCT CTTCTTCTGGGCTTTTCGACGGTGGATGCCTCAAAGGAGAATATATATTT TACTGTCTACGAGAGGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCT TTAATCTCCCTGTGGGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTG CTCTTCAACAACGACCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGA TCACGACGATATTGTCGGGTACAACCAGGGTCACTGTGTCGAGACTGTGG CTTCGGAAGGTTTTATCGCCGAATGCTTCTTCACGTACGTGTTCGACGAC GGCTCGCTCACGGCGAACGGCCCGTTCAACTTCGATGCCAGTTCTAGGAG CGTTCTTCCCTCTGTACTAGCCGTCACTGGGGGCACCGGGGATTACGCTG CCACCCAGGGAGAGGGTCACTGTGTCGAGACTGTGGCTTCGGAAGGTTTT ATCGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGCTCGCTCACGGC GAACGGCCCGTTCAACTTCGATGCCAGTTCTAGGAGCGTTCTTCCCTCTG TACTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCCACCCAGGGAGAG GCTGCTCTGTCTGCCGGACCTGCCGAAGACTTCCCATCCTTGCAGTTCGA CTTCAAGCTCAAGGGGCTTTGAGCTGCTCTGTCTGCCGGACCTGCCGAAG ACTTCCCATCCTTGCAGTTCGACTTCAAGCTCAAGGGGCTTTGA back to top
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