mRNA_F-serratus_M_contig955.20897.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig955.20897.1
Unique NamemRNA_F-serratus_M_contig955.20897.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 5.820e-79
Identity = 130/177 (73.45%), Postives = 145/177 (81.92%), Query Frame = 1 
Query:    1 MVRFIV-ASAVFALLLGFSTVDASKE----NIYFTVYERQSDDGPRHSPLFNLPVG-GEEGQFPSKMVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDFKLK 513
            MVRFIV AS  FALLLGF+TV+AS+     ++ FTV+ERQSDDGPRHSPLF LPV   E+ ++PSKMVLFNNDLYGSE  LI+E  D ++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFDA    VLPS LAVTGGTG+Y    G   +SAGPAE+FPSLQFDFKLK
Sbjct:    1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAED-GVLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLK 176
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BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.830e-54
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:  181 MVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDFKLK 513
            MVLFNNDLYGSE  LI+ED ++++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFD     VLPS LAVTGGTG+Y   QG   +SAGPAE+FPSLQFDFKLK
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVED-GVLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLK 110
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BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Match: A0A6N6VM22_9HYPH (Allene-oxide cyclase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VM22_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 2.970e-5
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  154 GEEGQFPSKMVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFPSLQFDF 504
            G +G     ++ F N+++       ++ + + VG + G+CV TVA + +  EC +T     G +T  GPF  DA       S+LA+TGG+G+YA  +G+  L A  A+     ++DF
Sbjct:   52 GAKGDSNGDVLTFANEVF-------DKSNKEKVGTDNGYCVRTVAGKAW--ECIWTLSLAKGQITVEGPF-LDAGD-----SMLAITGGSGEYAHARGDMLLHARNAQ---GSEYDF 150
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig955.20897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE5.820e-7973.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI3.830e-5478.38Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
A0A6N6VM22_9HYPH2.970e-531.62Allene-oxide cyclase n=1 Tax=Parvibaculum sediment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig955contigF-serratus_M_contig955:117667..119685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size577
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig955.20897.1prot_F-serratus_M_contig955.20897.1Fucus serratus malepolypeptideF-serratus_M_contig955 117722..119685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.4849548-UTR-F-serratus_M_contig955:117666..1177211622932723.4849548-UTR-F-serratus_M_contig955:117666..117721Fucus serratus maleUTRF-serratus_M_contig955 117667..117721 -
1690964441.3694928-UTR-F-serratus_M_contig955:117666..1177211690964441.3694928-UTR-F-serratus_M_contig955:117666..117721Fucus serratus maleUTRF-serratus_M_contig955 117667..117721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.5000224-CDS-F-serratus_M_contig955:117721..1177931622932723.5000224-CDS-F-serratus_M_contig955:117721..117793Fucus serratus maleCDSF-serratus_M_contig955 117722..117793 -
1690964441.381443-CDS-F-serratus_M_contig955:117721..1177931690964441.381443-CDS-F-serratus_M_contig955:117721..117793Fucus serratus maleCDSF-serratus_M_contig955 117722..117793 -
1622932723.5143232-CDS-F-serratus_M_contig955:118787..1189731622932723.5143232-CDS-F-serratus_M_contig955:118787..118973Fucus serratus maleCDSF-serratus_M_contig955 118788..118973 -
1690964441.3971305-CDS-F-serratus_M_contig955:118787..1189731690964441.3971305-CDS-F-serratus_M_contig955:118787..118973Fucus serratus maleCDSF-serratus_M_contig955 118788..118973 -
1622932723.5327947-CDS-F-serratus_M_contig955:119421..1196851622932723.5327947-CDS-F-serratus_M_contig955:119421..119685Fucus serratus maleCDSF-serratus_M_contig955 119422..119685 -
1690964441.4087484-CDS-F-serratus_M_contig955:119421..1196851690964441.4087484-CDS-F-serratus_M_contig955:119421..119685Fucus serratus maleCDSF-serratus_M_contig955 119422..119685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig955.20897.1

>prot_F-serratus_M_contig955.20897.1 ID=prot_F-serratus_M_contig955.20897.1|Name=mRNA_F-serratus_M_contig955.20897.1|organism=Fucus serratus male|type=polypeptide|length=174bp
MVRFIVASAVFALLLGFSTVDASKENIYFTVYERQSDDGPRHSPLFNLPV
GGEEGQFPSKMVLFNNDLYGSESGLINEDHDDIVGYNQGHCVETVASEGF
IAECFFTYVFDDGSLTANGPFNFDASSRSVLPSVLAVTGGTGDYAATQGE
AALSAGPAEDFPSLQFDFKLKGL*
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mRNA from alignment at F-serratus_M_contig955:117667..119685-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig955.20897.1 ID=mRNA_F-serratus_M_contig955.20897.1|Name=mRNA_F-serratus_M_contig955.20897.1|organism=Fucus serratus male|type=mRNA|length=2019bp|location=Sequence derived from alignment at F-serratus_M_contig955:117667..119685- (Fucus serratus male)
ATGGTGCGGTTCATTGTTGCATCGGCGGTATTCGCTCTTCTTCTGGGCTT
TTCGACGGTGGATGCCTCAAAGGAGAATATATATTTTACTGTCTACGAGA
GGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTTAATCTCCCTGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGACGATATTG
TCGGGTACAACCAGGTGCGCCAGTAGAACCTGAAGCTAGAGGATCGTGTA
CAATATGAAAAAAGAATCAGAAAAGAAAATTAGAGCAAATATTTCGTTGG
TAGGCAGCGCTCCTAGACCTTGGTTCGTTACGGTCTCTTATACTACACTG
TATCCTTCCTGACCTTGACCGGTATCATTCATCACGAGACGACAAATGAG
CTCTCTCATGAAAAACGCGATTGTTTCGTCACGGAAAACGTTCCTCGGAA
GACTCAAGCGTAAGTAGTGTAGGCTATAAACGAAATGACGTGAAGCTTGT
CAGAAATTGAACTGTCAAATAAAGTCGAAAACAATTATGAACACACCAGA
CAAGGGCCATGAAACATGAAAATACAAGTACTGGAAAGTAGGTCAATACT
CAATTAACACCATTTGTTTTTTCATCTCTTAAAACTCTGAGGCCACGTTA
TTTACGTGGCAGGGTCACTGTGTCGAGACTGTGGCTTCGGAAGGTTTTAT
CGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGCTCGCTCACGGCGA
ACGGCCCGTTCAACTTCGATGCCAGTTCTAGGAGCGTTCTTCCCTCTGTA
CTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCCACCCAGGGAGAGGT
GGATAACCAGGGTTACACCCTCACGTTGATTGATCGTTGTTAAAAGTTTA
TATCAAAAACATTGCTGAGCAAATCGTTGTTTACAAGAAAAGGAGTTTCC
TTTCGTCTGACATGGCCCACGGCTCAACCTCCTCTATCCTAATCCGAAAC
ATAAACAGACTGCCTTCGTCACCCCCTCTAAGTGGCTTCTGTCGATGTCT
ATGTTGATATCTTGATAGGAATACTCTTACGCAGTTTGGTCGGAGGTTTC
CGACCGATGAAAACCTACTATAGCCAGTAAATCCGGCAATCAATGGTCAT
TGGAACACTCGTGTGTTGCACTCCAACGTCTGGCGTTTACCGCTGTCGAC
GCACGTCAGTTCGAGAACTTGTGCGTTACTCGACAATATCTGGTGGACGG
CACATATAACGACCCTGTAGATATGAACCGACGTCTGCATGACCCTCGAA
ATATGTCGGTGCCGTACCCGAGATACCACCGTGAGGTCGATAGTACCTCT
GGGTAATACGAAGGGGGCCATAACTTTGGAGGCAAAGCTTATGAATATAT
ATCTAGGGTACCGTGTGGCACTCAAGAGATCCACGAGATTTGATCGTGAC
ACTTGCTCTTGGTGTCCCAAAACACCAATGCTCGATAATACGATTAAAGG
TTCATGACCCCAGGTAGGACCGGCTTGGGCAGACAGGAACAACATTACCT
GCGAGTCGCCGCAAATCAGTGTTTGTAAAGCACTAGTCGGTTTTGACGTT
TCTTGGCTGGAAATCGAACCCAGGGGTCTTCCGAGCGCTTAACGTAGCTT
ATCTCAGATATCCGCTCTTGAAATAGTAGATTTCTCTGGGGTGAAAGTTG
TGTGTAGTAATTAGAATATACCTCGTACGTTTTCCTTTTGGTTTAGTATA
TTATTTTGGCTCTTTACCTTTTACAACTCCTGTAAATCCAGCCTGTAACA
GTTCACAACACGGCCTAACCTACTGTCCCTTCCTGCTGACAGGCTGCTCT
GTCTGCCGGACCTGCCGAAGACTTCCCATCCTTGCAGTTCGACTTCAAGC
TCAAGGGGCTTTGAAGGAAATAGGTGGCTGTGGTCGTGGTGCGGGCCCAT
CAATCAAGTACGATCAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig955:117667..119685-

>mRNA_F-serratus_M_contig955.20897.1 ID=mRNA_F-serratus_M_contig955.20897.1|Name=mRNA_F-serratus_M_contig955.20897.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig955:117667..119685- (Fucus serratus male)
ATGGTGCGGTTCATTGTTGCATCGGCGGTATTCGCTCTTCTTCTGGGCTT
TTCGACGGTGGATGCCTCAAAGGAGAATATATATTTTACTGTCTACGAGA
GGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTTAATCTCCCTGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGACGATATTG
TCGGGTACAACCAGATGGTGCGGTTCATTGTTGCATCGGCGGTATTCGCT
CTTCTTCTGGGCTTTTCGACGGTGGATGCCTCAAAGGAGAATATATATTT
TACTGTCTACGAGAGGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCT
TTAATCTCCCTGTGGGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTG
CTCTTCAACAACGACCTGTACGGTTCCGAAAGTGGTCTGATCAATGAGGA
TCACGACGATATTGTCGGGTACAACCAGGGTCACTGTGTCGAGACTGTGG
CTTCGGAAGGTTTTATCGCCGAATGCTTCTTCACGTACGTGTTCGACGAC
GGCTCGCTCACGGCGAACGGCCCGTTCAACTTCGATGCCAGTTCTAGGAG
CGTTCTTCCCTCTGTACTAGCCGTCACTGGGGGCACCGGGGATTACGCTG
CCACCCAGGGAGAGGGTCACTGTGTCGAGACTGTGGCTTCGGAAGGTTTT
ATCGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGCTCGCTCACGGC
GAACGGCCCGTTCAACTTCGATGCCAGTTCTAGGAGCGTTCTTCCCTCTG
TACTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCCACCCAGGGAGAG
GCTGCTCTGTCTGCCGGACCTGCCGAAGACTTCCCATCCTTGCAGTTCGA
CTTCAAGCTCAAGGGGCTTTGAGCTGCTCTGTCTGCCGGACCTGCCGAAG
ACTTCCCATCCTTGCAGTTCGACTTCAAGCTCAAGGGGCTTTGA
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