mRNA_F-serratus_M_contig95.20859.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.020e-25 Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDETDAE 221 +N+DTLMNAFTTIF ILSG++W+ VM+DARRATGWVSV YFVSLII+GMMI+M LFLAILLSNF +D+ DAE Sbjct: 675 SNFDTLMNAFTTIFEILSGENWNTVMYDARRATGWVSVFYFVSLIIMGMMIVMNLFLAILLSNFTNKDDVDAE 747
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.050e-23 Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIF------VILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDETDAE 221 +N+DTLMNAFTTIF ILSG++W+ VM+DARRATGWVSV YFVSLII+GMMI+M LFLAILLSNF +D+ DAE Sbjct: 171 SNFDTLMNAFTTIFEASRCSTILSGENWNTVMYDARRATGWVSVFYFVSLIIMGMMIVMNLFLAILLSNFTNKDDVDAE 249
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 5.160e-21 Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGG--EDETDAE 221 +N+DTL++AFTT+F +LSG++W+A M+ ARRA GWVSV YFVSLII+GMMI+M+LFLAILLS+F +DE DAE Sbjct: 407 SNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVFYFVSLIIVGMMIVMSLFLAILLSHFATPEQDEADAE 481
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.310e-20 Identity = 46/72 (63.89%), Postives = 64/72 (88.89%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDETDA 218 +N+DTL++AFTT+F +LSG++W+A M+ ARRA GWVSVIYFVSLI++GMMI+M+LFLAILLS+F ++ +A Sbjct: 793 SNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVIYFVSLIVVGMMIVMSLFLAILLSHFATPEQDEA 864
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7S1GBX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBX1_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 8.360e-16 Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDE 209 A++D L+ AF TIF +L+G++W+ VM+D RATGW SV+YFVSL++LG I++ LFLAILL NF G +E Sbjct: 473 AHFDDLLWAFVTIFQVLTGENWNVVMYDGWRATGWTSVLYFVSLVVLGNFIVLNLFLAILLGNFEGMEE 541
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7R9YD26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD26_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.930e-15 Identity = 40/77 (51.95%), Postives = 60/77 (77.92%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGE-DETDAEEES 230 AN+D+ +N+ T+F++L+ + W+ VM+DA RATGW +VIYFV+LI+LG++ ++ LFLAILLS F D+ D E+ES Sbjct: 231 ANFDSFLNSMATVFIVLTAEMWNTVMYDAWRATGWPAVIYFVALIVLGLVFVLNLFLAILLSAFESRLDDEDKEDES 307
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: J9FXK4_9SPIT (Voltage-gated Ion Channel (VIC) Superfamily n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9FXK4_9SPIT) HSP 1 Score: 80.5 bits (197), Expect = 8.130e-15 Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 3 Query: 6 NYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDE 209 N+DT +NAFTTIF++L GD W+ +M++ R+TG S+++FV+L+I G MI+M LFLAILL NFG EDE Sbjct: 766 NFDTFLNAFTTIFIVLIGDGWNNIMYNYARSTGGPSMVFFVTLVIFGKMILMNLFLAILLRNFG-EDE 832
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7S2QWF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWF6_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.030e-14 Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 3 Query: 6 NYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFG 197 N+D AF TIF ILSG++W+AVM+D RAT ++V+YF SLI+ GM I+MTLFLAILL+NFG Sbjct: 720 NFDDFHFAFVTIFQILSGENWNAVMYDGWRATSGLAVVYFFSLIVFGMFIVMTLFLAILLNNFG 783
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP) HSP 1 Score: 79.0 bits (193), Expect = 2.750e-14 Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNF--GGEDETDAEEE 227 AN+DT++ + T+F IL+G++W+ VM D R++GW SV+YFVSL++LG I++ LFLAILL NF ++E DAE E Sbjct: 530 ANFDTMLWSVVTVFQILTGENWNVVMLDGWRSSGWSSVLYFVSLVVLGNFIVLNLFLAILLGNFDESNDEERDAERE 606
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7S2PB29_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB29_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.130e-12 Identity = 33/64 (51.56%), Postives = 53/64 (82.81%), Query Frame = 3 Query: 3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNF 194 +N+D+L+ + TT+F IL+G++W++VM+D RRAT +V+YF+SL++ G+ I+M LFLAIL+ NF Sbjct: 646 SNFDSLVWSMTTVFQILTGENWNSVMYDGRRATSGAAVLYFLSLVVFGVFIVMNLFLAILIGNF 709 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig95.20859.1 >prot_F-serratus_M_contig95.20859.1 ID=prot_F-serratus_M_contig95.20859.1|Name=mRNA_F-serratus_M_contig95.20859.1|organism=Fucus serratus male|type=polypeptide|length=139bp MNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFback to top mRNA from alignment at F-serratus_M_contig95:743060..743740- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig95.20859.1 ID=mRNA_F-serratus_M_contig95.20859.1|Name=mRNA_F-serratus_M_contig95.20859.1|organism=Fucus serratus male|type=mRNA|length=681bp|location=Sequence derived from alignment at F-serratus_M_contig95:743060..743740- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig95:743060..743740- >mRNA_F-serratus_M_contig95.20859.1 ID=mRNA_F-serratus_M_contig95.20859.1|Name=mRNA_F-serratus_M_contig95.20859.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig95:743060..743740- (Fucus serratus male)back to top |