mRNA_F-serratus_M_contig948.20814.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig948.20814.1
Unique NamemRNA_F-serratus_M_contig948.20814.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 99.8 bits (247), Expect = 3.470e-22
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318
            ++K   G DG+VEKYK RLVAQGF QV+G+ Y E ++P   + SIR+LLA  A  D E+   D + AFL  +++EEI++++P   +    AV RL KA+YGL QA
Sbjct: 1044 VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 6.760e-20
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 318
            +YK     DG +E+YK RLVAQGF Q++G+ Y+E +SP     S+R  LA V AK  EL   D   AFL  D++EE+++++PE F+      V +L K++YGL QA
Sbjct:  599 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 704          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 91.3 bits (225), Expect = 3.040e-19
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 318
            +YK     DG +E+YK RLVAQGF Q++G+ Y+E +SP     S+R  LA   AK  EL   D   AFL  D++EE+++++PE F+      V +L K++YGL QA
Sbjct:  130 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 235          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 91.3 bits (225), Expect = 3.230e-19
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 318
            +YK     DG +E+YK RLVAQGF Q++G+ Y+E +SP     S+R  LA   AK  EL   D   AFL  D++EE+++++PE F+      V +L K++YGL QA
Sbjct:  853 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 958          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 6.780e-19
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   22 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318
            G +GK+EKYK RLVAQGF QVKG+ Y E ++P     SIR LL+  A  D E+   D + AFL  D+DEEI+++ P       G V +L K++Y L QA
Sbjct:   49 GPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQA 147          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A2R6QXJ8_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6QXJ8_9APHY)

HSP 1 Score: 87.8 bits (216), Expect = 1.330e-18
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   22 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318
            G + ++ KYK RLVA+GF Q+KG+ Y E ++P     SIR LLA  A  D E+   D + AFL  D+++EI+++ P  F+   G V +LNK++YGL QA
Sbjct:   49 GPNREILKYKARLVARGFTQIKGIDYNETFAPVSKFTSIRSLLALTAHHDLEIHQMDVKSAFLNGDLNKEIYMQCPPGFEAKDGKVWKLNKSLYGLKQA 147          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 88.6 bits (218), Expect = 2.840e-18
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   22 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318
            G DG VE+YK RLVAQGF QV+G+ Y E ++P    ASIR +L   A  D E+   D + AFL  D+DEEI +  P+      G V RL KA+YGL QA
Sbjct:  985 GADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQGSSCPDGHVWRLRKALYGLRQA 1083          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 87.0 bits (214), Expect = 9.570e-18
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318
            +YK  +  DG ++K+K RLV QGF Q  G+ Y++ +SP   A+++R LL+  A+K+ +L  FD   AFL   ++EEI+I+ PE F      V +LN+++YGL QA
Sbjct:  291 VYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQA 395          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 86.3 bits (212), Expect = 1.810e-17
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318
            +Y+     DG++ +YK RLVAQGF Q  G+ Y E ++P     S+R+LLA  A ++ EL  FD   A+L AD+DEEI++  P  +++    + RL KA+YGL QA
Sbjct:   64 VYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQA 168          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 84.3 bits (207), Expect = 8.730e-17
Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 IGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQ-KFLGAVGRLNKAIYGLVQA 318
            +G DGK+++YK RLVAQG+ Q  G+ Y+E ++P     SIR+L++  A  D +L   D + AFL   ++EE+++++P  F+ +    V RLNK++YGL Q+
Sbjct:  903 MGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQS 1003          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.470e-2247.62Integrase catalytic domain-containing protein (Fra... [more]
A0A438E4T4_VITVI6.760e-2044.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI3.040e-1943.40Retrovirus-related Pol polyprotein from transposon... [more]
A5BCC7_VITVI3.230e-1943.40Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A2R6NNP3_9APHY6.780e-1947.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6QXJ8_9APHY1.330e-1844.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SUY4_PYCCI2.840e-1849.49Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A146LHR9_LYGHE9.570e-1841.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V3W8_TRAPU1.810e-1742.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T5R4_CAJCA8.730e-1740.59Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig948contigF-serratus_M_contig948:109779..110096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.4
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog15368.BRADI1G58725.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932703.8079412-CDS-F-serratus_M_contig948:109778..1100961622932703.8079412-CDS-F-serratus_M_contig948:109778..110096Fucus serratus maleCDSF-serratus_M_contig948 109779..110096 +
1690964431.4164119-CDS-F-serratus_M_contig948:109778..1100961690964431.4164119-CDS-F-serratus_M_contig948:109778..110096Fucus serratus maleCDSF-serratus_M_contig948 109779..110096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig948.20814.1prot_F-serratus_M_contig948.20814.1Fucus serratus malepolypeptideF-serratus_M_contig948 109779..110096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig948.20814.1

>prot_F-serratus_M_contig948.20814.1 ID=prot_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MLYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLL
ATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAI
YGLVQA
back to top

mRNA from alignment at F-serratus_M_contig948:109779..110096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig948.20814.1 ID=mRNA_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig948:109779..110096+ (Fucus serratus male)
ATGTTGTACAAGCGAATAATCGGGCAGGACGGCAAGGTCGAGAAGTACAA GTGTCGACTTGTCGCTCAAGGGTTCTGGCAGGTGAAAGGTGTGCACTACA AGGAAAAGTACTCGCCCGCGCCATCAGCCGCGTCAATCCGGATGCTTTTG GCGACGGTAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGCAGAGCA GGCGTTTTTGAAGGCGGATATTGACGAGGAGATACACATAGAGATCCCCG AGGAGTTCCAGAAGTTTCTGGGGGCAGTGGGACGGCTTAATAAGGCCATT TACGGACTCGTGCAGGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig948:109779..110096+

>mRNA_F-serratus_M_contig948.20814.1 ID=mRNA_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig948:109779..110096+ (Fucus serratus male)
ATGTTGTACAAGCGAATAATCGGGCAGGACGGCAAGGTCGAGAAGTACAA
GTGTCGACTTGTCGCTCAAGGGTTCTGGCAGGTGAAAGGTGTGCACTACA
AGGAAAAGTACTCGCCCGCGCCATCAGCCGCGTCAATCCGGATGCTTTTG
GCGACGGTAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGCAGAGCA
GGCGTTTTTGAAGGCGGATATTGACGAGGAGATACACATAGAGATCCCCG
AGGAGTTCCAGAAGTTTCTGGGGGCAGTGGGACGGCTTAATAAGGCCATT
TACGGACTCGTGCAGGCGATGTTGTACAAGCGAATAATCGGGCAGGACGG
CAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTCTGGCAGG
TGAAAGGTGTGCACTACAAGGAAAAGTACTCGCCCGCGCCATCAGCCGCG
TCAATCCGGATGCTTTTGGCGACGGTAGCAGCCAAGGATGGGGAGCTGCG
CCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGAGGAGA
TACACATAGAGATCCCCGAGGAGTTCCAGAAGTTTCTGGGGGCAGTGGGA
CGGCTTAATAAGGCCATTTACGGACTCGTGCAGGCG
back to top