mRNA_F-serratus_M_contig943.20801.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig943.20801.1
Unique NamemRNA_F-serratus_M_contig943.20801.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.040e-41
Identity = 97/202 (48.02%), Postives = 125/202 (61.88%), Query Frame = 2 
Query:   68 GCFFLMLDGAVEQKR-----IVMVDSDTPGIRGKLAVLAETMVDS-------RQMKHMKVINGGV-KQRARKWRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQSYWIRCEACVEGGRQLQM 634
            G F   + G+V  KR     IVM+    PG RG+LA++     D+       R       I+GG+ K   R+W+SM +C LCG+G  R + L SCG CPRS+H  CL E +G +   ++    +FVCPQHRCV CT+A AA  GLLFRCQ C  A+CEDCLP DEVE L RN QLEALGY ++Q+YWIRC+ CV G  Q ++
Sbjct: 1597 GLFGGGVHGSVLGKRARKSCIVMLRDGNPGGRGRLAIVTNAPKDATAAAAAARPGSGGSSIDGGMPKPYHRQWQSMAVCALCGEGPDRSRPLTSCGLCPRSYHGGCL-EASGVDYDATA-GEGVFVCPQHRCVACTKA-AAGRGLLFRCQACAKAYCEDCLPGDEVEPLARNPQLEALGYLAKQAYWIRCQPCVNGELQAKL 1795
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.110e-39
Identity = 92/195 (47.18%), Postives = 120/195 (61.54%), Query Frame = 2 
Query:   92 GAVEQKR-----IVMVDSDTPGIRGKLAVLAETMVDS--------RQMKHMKVINGG-VKQRARKWRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQSYWIRCEACVEGGRQLQM 634
            G+V  KR     IVM+    PG RG+L ++ +   D+        R       I+GG  K   R+W+SM +C LCG+   R + L+ C  CPRS+H +CL E +G +   ++    +FVCPQHRCV CT+A AA  GLLFRCQ C  A+CEDCLPEDEVE L RN QLEALGY ++Q+YWIRC  CV G  Q ++
Sbjct: 1620 GSVLGKRARKSCIVMLGDGNPGRRGRLTIVTDAPQDTTAPAAAAPRPGSGGSSIDGGRPKPYHRQWQSMAVCTLCGEDPDRSRPLVCCRLCPRSYHGDCL-EASGVDYDATA-GEGVFVCPQHRCVACTKA-AAGRGLLFRCQACAKAYCEDCLPEDEVEPLARNPQLEALGYLAKQAYWIRCRPCVNGELQAKL 1811
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: A0A7S1XPX0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPX0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.570e-31
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:  311 CGFCPRSFHAECLDEMAGA----NVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQSYWIRCEACVEGGRQ 625
            C FCPR FHA CL   + +      K S   +   VCPQH+C  C R+T+A+GGLLFRC +C ++ CEDCLPED++E LGR+  +EA GY S+QSYWIRC +CVEGGRQ
Sbjct:  326 CSFCPRIFHASCLAAFSASIGEPKRKKSEGGNQPLVCPQHKCTSCFRSTSASGGLLFRCVSCPHSLCEDCLPEDDIEGLGRSAHMEAQGYISKQSYWIRCPSCVEGGRQ 434
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: A0A7R9Y8C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8C0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.940e-31
Identity = 62/124 (50.00%), Postives = 80/124 (64.52%), Query Frame = 2 
Query:  311 CGFCPRSFHAECLDEM-------AGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQSYWIRCEACVEGGRQLQMDDET-DPSP 658
            C FCPR +H ECL          AGA  ++S+P     VCPQH+C  C R TAAAGGLLFRC +C  A CEDCLPE+E+E LGR+  +E  GY  +QSYWI+C +C+  GR+  ++ E  +P P
Sbjct:    1 CTFCPRVYHDECLKAFVATRLRDAGAAAQSSTP----VVCPQHKCTSCFRTTAAAGGLLFRCISCPIALCEDCLPEEEIEGLGRSAYMEQTGYHGKQSYWIKCNSCLAAGREPAIEPERKEPEP 120
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: K8Z8U9_NANGC (Swi snf-related matrix-associated actin-dependent regulator of chromatin a1 isoform a isoform 19 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8U9_NANGC)

HSP 1 Score: 136 bits (342), Expect = 5.320e-29
Identity = 74/189 (39.15%), Postives = 104/189 (55.03%), Query Frame = 2 
Query:  101 EQKRIVMVDSDTPGIRGKLAVLAETMVDSRQMKHMKVI-NGGVKQRA---------RKWRSMKICLLCGKG----NTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQSYWIRCEACVEGGRQ 625
             ++R+VMVD    G    + VLA+  + S++    +   +GG K+           R W     C LC K      ++      CG+CP+ FH  CL       V+ + P + M VCP H C GC R TAAAGGLLFRC  C  ++CEDCL ++ +ESLGR + LEALGYF++Q+Y+IRC  C+  G +
Sbjct:  969 RKQRLVMVDGRGSGYGRSVPVLADEYLQSQKDAAAEATGSGGSKEDTTSSGPRRLRRDWDHESGCFLCQKALIADPSKKGQNFKCGYCPKVFHTSCLSNFTKKAVEGAGPANIM-VCPHHNCHGCRRTTAAAGGLLFRCVECPRSYCEDCLEDENIESLGRWKPLEALGYFTKQAYFIRCPTCLNSGEE 1156
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: W7TYI9_9STRA (Swi snf matrix actin dependent regulator of subfamily member 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYI9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.350e-27
Identity = 72/180 (40.00%), Postives = 100/180 (55.56%), Query Frame = 2 
Query:  101 EQKRIVMVDSDTPGIRGKLAVLAETMVDSRQMKHMKVI-NGGVKQRA---------RKWRSMKICLLCGKG----NTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQSYWIRC 598
             ++R+VMVD    G    + VLA+  + S++    +   +GG K+           R W     C LC K      ++      CG+CP+ FH  CL       V+ + P + M VCP H C GC R TAAAGGLLFRC  C  ++CEDCL ++ +ESLGR + LEALGYF++Q+Y+IRC
Sbjct: 2062 RKQRLVMVDGRGSGYGRSVPVLADEYLQSQKDAAAEATGSGGSKEDTTSSGPRRLRRDWDHESGCFLCQKALIADPSKKGQNFKCGYCPKVFHTSCLSNFTKKAVEGAGPANIM-VCPHHNCHGCRRTTAAAGGLLFRCVECPRSYCEDCLEDENIESLGRWKPLEALGYFTKQAYFIRC 2240
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: K5VZS7_PHACS (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5VZS7_PHACS)

HSP 1 Score: 113 bits (283), Expect = 2.250e-22
Identity = 71/181 (39.23%), Postives = 89/181 (49.17%), Query Frame = 2 
Query:   86 LDGAVEQKRIVMVDSDTPGIRGKLAVLAETMVDSRQMKHMKVINGGVKQRARK---WRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSEQ--SYWIRCEACVE 613
            L     Q RIV+VD           VL+E +   +      + +G   +R R+   W     C+ C  G      L  C  CPR FHAEC         K  +  ++M VCPQHRC GC R TA AG +LFRCQTC NAFCEDCLP  E+ ++G       L  F E   +Y+IRC AC E
Sbjct:  408 LQKRARQTRIVVVDG--------FEVLSECLAPLQHELKAALADGPAAKRKRRQFDWEDW--CIYCRDGGE----LTLCNSCPRVFHAEC-----HGLTKAKAAKASMLVCPQHRCCGCDRNTADAGNMLFRCQTCTNAFCEDCLPPGEIGAVGDTLPEFVLRGFEEMPSAYFIRCHACQE 569
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: UPI00044180E2 (hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI00044180E2)

HSP 1 Score: 105 bits (261), Expect = 2.390e-19
Identity = 61/157 (38.85%), Postives = 84/157 (53.50%), Query Frame = 2 
Query:  146 RGKLAVLAETMVDSRQMKHMKVINGGVKQRAR-KWRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNR-QLEALGY-FSEQSYWIRCEAC 607
            +GK  ++    + +R +          KQ+ + KW S   C  C  G      L+ CG CPR FH EC   +  A +K +       +C QH CV C R+T  AGG+LFRCQTC  AFCEDCLPE +++++G    +   LGY FS  +Y+IRC  C
Sbjct:  823 KGKRVIMDGIEIPARTVPAAAPAEPKAKQKGKAKWDSEDWCHYCRDGGE----LVCCGRCPRVFHKECRG-LTAAQLKRNFA----IICEQHSCVVCNRSTGDAGGMLFRCQTCPQAFCEDCLPEGDIDAVGETLPEFLLLGYGFSPSAYYIRCHDC 970
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: A0A0L0HA78_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HA78_SPIPD)

HSP 1 Score: 104 bits (260), Expect = 3.120e-19
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2 
Query:   98 VEQKRIVMVDSDTPGIRGKLAVLAETM-VDSRQMKHMKVINGGV--KQRARKWRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNRQLEALGYFSE--QSYWIRCEACVE 613
            V + R+VMVD          AVL ET+  D  + +     N  +  K+R RK+   ++C  C   + + K LL C  CPRS+H +C+        K S+     + CPQH CV C R T  AGG+LFRCQ+C NAFCEDCL  DE+  +G       L  F +  Q+Y+IRC  C++
Sbjct:  693 VREDRVVMVDGH--------AVLKETVGCDMWEARSTFSKNAVIEKKRRRRKFAHEEVCHACSDEDDQSK-LLGCTLCPRSYHPKCV-----GMTKASAKQLVTWSCPQHLCVECLRKTGDAGGMLFRCQSCSNAFCEDCLDFDEIFPVGDVLPEFLLLGFPKVGQAYYIRCTECLD 855
[Close]
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Match: A0A0C2WXS9_AMAMK (Uncharacterized protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WXS9_AMAMK)

HSP 1 Score: 103 bits (256), Expect = 9.190e-19
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 2 
Query:  224 VKQRARKWRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTSSPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVESLGRNR-QLEALGYFSEQS-YWIRCEACV 610
            +K+   K+ S + C +C  G      L+ C  CPR FHA C         K +   SA   C QH C  C R T+ AGGLLFRCQTC  AFCEDCLP D++E +G    +LE LGY ++++ Y+IRC  C+
Sbjct:  817 LKRERAKFESEEWCNICRDGGD----LVLCDVCPRVFHASCY-----GITKRTIAFSARITCSQHSCAVCERKTSDAGGLLFRCQTCHQAFCEDCLPFDDIEPVGETLPELELLGYGAQKAAYFIRCHDCL 938
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig943.20801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY6_ECTSI4.040e-4148.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTV3_9PHAE2.110e-3947.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XPX0_9STRA2.570e-3155.96Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9Y8C0_9STRA2.940e-3150.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
K8Z8U9_NANGC5.320e-2939.15Swi snf-related matrix-associated actin-dependent ... [more]
W7TYI9_9STRA8.350e-2740.00Swi snf matrix actin dependent regulator of subfam... [more]
K5VZS7_PHACS2.250e-2239.23Helicase C-terminal domain-containing protein (Fra... [more]
UPI00044180E22.390e-1938.85hypothetical protein n=1 Tax=Punctularia strigosoz... [more]
A0A0L0HA78_SPIPD3.120e-1938.42Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A0C2WXS9_AMAMK9.190e-1943.51Uncharacterized protein n=1 Tax=Amanita muscaria (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig943contigF-serratus_M_contig943:323612..328721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog2880.D8LCY6
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsCOG0553@1,KOG0385@2759,KOG1525@1,KOG1525@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Exons6
Model size2524
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig943.20801.1prot_F-serratus_M_contig943.20801.1Fucus serratus malepolypeptideF-serratus_M_contig943 326417..328639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932701.7905738-UTR-F-serratus_M_contig943:323611..3249751622932701.7905738-UTR-F-serratus_M_contig943:323611..324975Fucus serratus maleUTRF-serratus_M_contig943 323612..324975 -
1690964430.423233-UTR-F-serratus_M_contig943:323611..3249751690964430.423233-UTR-F-serratus_M_contig943:323611..324975Fucus serratus maleUTRF-serratus_M_contig943 323612..324975 -
1622932701.812725-UTR-F-serratus_M_contig943:325343..3255241622932701.812725-UTR-F-serratus_M_contig943:325343..325524Fucus serratus maleUTRF-serratus_M_contig943 325344..325524 -
1690964430.4356139-UTR-F-serratus_M_contig943:325343..3255241690964430.4356139-UTR-F-serratus_M_contig943:325343..325524Fucus serratus maleUTRF-serratus_M_contig943 325344..325524 -
1622932701.8324614-UTR-F-serratus_M_contig943:326275..3264161622932701.8324614-UTR-F-serratus_M_contig943:326275..326416Fucus serratus maleUTRF-serratus_M_contig943 326276..326416 -
1690964430.4458861-UTR-F-serratus_M_contig943:326275..3264161690964430.4458861-UTR-F-serratus_M_contig943:326275..326416Fucus serratus maleUTRF-serratus_M_contig943 326276..326416 -
1622932701.9123185-UTR-F-serratus_M_contig943:328639..3287211622932701.9123185-UTR-F-serratus_M_contig943:328639..328721Fucus serratus maleUTRF-serratus_M_contig943 328640..328721 -
1690964430.4975526-UTR-F-serratus_M_contig943:328639..3287211690964430.4975526-UTR-F-serratus_M_contig943:328639..328721Fucus serratus maleUTRF-serratus_M_contig943 328640..328721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932701.84693-CDS-F-serratus_M_contig943:326416..3267311622932701.84693-CDS-F-serratus_M_contig943:326416..326731Fucus serratus maleCDSF-serratus_M_contig943 326417..326731 -
1690964430.4562485-CDS-F-serratus_M_contig943:326416..3267311690964430.4562485-CDS-F-serratus_M_contig943:326416..326731Fucus serratus maleCDSF-serratus_M_contig943 326417..326731 -
1622932701.8655455-CDS-F-serratus_M_contig943:327121..3273291622932701.8655455-CDS-F-serratus_M_contig943:327121..327329Fucus serratus maleCDSF-serratus_M_contig943 327122..327329 -
1690964430.4668062-CDS-F-serratus_M_contig943:327121..3273291690964430.4668062-CDS-F-serratus_M_contig943:327121..327329Fucus serratus maleCDSF-serratus_M_contig943 327122..327329 -
1622932701.8811305-CDS-F-serratus_M_contig943:327730..3278371622932701.8811305-CDS-F-serratus_M_contig943:327730..327837Fucus serratus maleCDSF-serratus_M_contig943 327731..327837 -
1690964430.477539-CDS-F-serratus_M_contig943:327730..3278371690964430.477539-CDS-F-serratus_M_contig943:327730..327837Fucus serratus maleCDSF-serratus_M_contig943 327731..327837 -
1622932701.897412-CDS-F-serratus_M_contig943:328513..3286391622932701.897412-CDS-F-serratus_M_contig943:328513..328639Fucus serratus maleCDSF-serratus_M_contig943 328514..328639 -
1690964430.48846-CDS-F-serratus_M_contig943:328513..3286391690964430.48846-CDS-F-serratus_M_contig943:328513..328639Fucus serratus maleCDSF-serratus_M_contig943 328514..328639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig943.20801.1

>prot_F-serratus_M_contig943.20801.1 ID=prot_F-serratus_M_contig943.20801.1|Name=mRNA_F-serratus_M_contig943.20801.1|organism=Fucus serratus male|type=polypeptide|length=252bp
MLDGAVEQKRIVMVDSDTPGIRGKLAVLAETMVDSRQMKHMKVINGGVKQ
RARKWRSMKICLLCGKGNTRPKALLSCGFCPRSFHAECLDEMAGANVKTS
SPNSAMFVCPQHRCVGCTRATAAAGGLLFRCQTCVNAFCEDCLPEDEVES
LGRNRQLEALGYFSEQSYWIRCEACVEGGRQLQMDDETDPSPRMRTTSVT
CGGRGAEDCEGDMSGAGSIESTASSRGIPRVQETILLRNRSGGWSRQGGR
F*
back to top

mRNA from alignment at F-serratus_M_contig943:323612..328721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig943.20801.1 ID=mRNA_F-serratus_M_contig943.20801.1|Name=mRNA_F-serratus_M_contig943.20801.1|organism=Fucus serratus male|type=mRNA|length=5110bp|location=Sequence derived from alignment at F-serratus_M_contig943:323612..328721- (Fucus serratus male)
GCTGCGTTTCTTCCATGAGTTGGTGGGGGGGGGGTGTTTGGTGTTGTTGC
TGTTGTCGGTGTTTGATGGATGCTTTTTTTTAATGTTGGATGGTGCCGTC
GAGCAGAAACGCATCGTGATGGTGGACAGCGATACCCCCGGAATCCGAGG
TAAACTGGCCGTGCTGGCGGAGACAATGGTGGACTCGAGGCAGATGAAAC
ATATGAAGGTCAGAAGTGGGAGGGAAACGTAGCCATTCTGTAGCATAACA
TGTTCCCTGGCGATAGCTGAGCGTACCAACGTTTTACTCATCGGGGTAGA
CTTGAAGAATCAATTGGAAAATAGTGGGCATATTTTTAAAATATGTACAG
TAGGTTAGAGTGGTAGAGACCAAGCACCAAATGGACGTACACAAGATATC
ATATGGTTAATATACTGCAATTCATACGAAGTATGTGGTGGAAGATATAG
GGTGAAAGGTGTAGGTAGCATTCTCAATATGATGTGCAGTATAGTTCGTA
AGAGTATTGCAGTTAGCATGCGTCCTTGTTAAGCTCAGCATTCCAGTACA
CTAAAACTCGTACTTGATCTAGTACGTTTTAAAGGCGATACAGTACCGTA
GACACCGCAGTCGAAGCCAGTAGGATCTGCCGCGCCCTACTCTGGTGTAG
TATATTTTGAGTAATAGAAAAGTAATAGAAAAAGAGAACGGCCCAGGGAC
GAAACGTGTCAACGCCGTCCGGCGTTTAATGTTTAAAAAGAAAGTTCATA
GCTCGCCGCCCTTTTGAGGCATGAATAGCTAACGTGGGGTTTACAGCAGG
GTCTTACAGCATTACAAAGAGGGGGTCATTTATTGTTGTTACTGTTGTTC
ATTGCTCCTGGTGATGTCTTCGGATCTGCTGAAGGTTATAAACGGGGGCG
TCAAGCAGCGGGCAAGAAAATGGCGGAGCATGAAGATTTGCTTGCTGTGC
GGCAAGGGCAACACGCGCCCCAAGGCGCTCTTGTCCTGCGGGTGAGTTCG
TTGGAAAGTCTTCTTTTTTAATTAGCATAAAGTGTTGGAATCTTTTCTCG
TGAAGGGCGCGCATGCCTGGTTGCTTCGGGATCCATTTGCTACTGTTATT
TTGGAGCCGTATGATGTGAATGATATGGTTACGATACCATGCGTGATATG
GGAAGGTAATGTAGTGTAATGTAACGTGGCACGATTCGCGGGGTAACGTG
TTGTACAGAGATTTAAATTGGTCTAAAGAGTACCGTACAGTGGGCAATGT
ACTGTACAACAGCAGCGGTGATTGAAAACATTTCGCTGCATACTTAACTC
GGCACCCCTTATCTTTGCAACCCCCTCCCGTCCCCCCCCCCTAAAAAACG
CCCCCTAAACACCCAACGCCGCCGCCACGACGCTCTCAACAGCTTCTGCC
CACGATCGTTCCACGCGGAGTGCCTCGACGAAATGGCGGGGGCCAATGTG
AAGACCTCCTCGCCCAACTCGGCGATGTTTGTGTGTCCTCAACACCGCTG
TGTGGGGTGTACGAGGGCCACGGCGGCTGCAGGGGGGCTGCTCTTCCGGT
GTCAGACCTGCGTTAACGCGTTCTGCGAGGACTGTCTGCCCGAGGATGAG
GTCAGTGTTACCATCAGAGCTGTCGTTAGGGGTTTCATCATTATTATTTT
TTTACTCGACCGAGTTTTGGCGTGAACCTTGAGTGGAACGTGTGCATTTT
AATAGCGCTCTTCTTTGTAGTCTTTTGCATAATTTATGCAGTACATGATG
CTTGCAACCTTTTTTTGTGTAAGGATCGCGGAGTATCGATGAACGAGGTT
ATTTCGAGCGATGCTGTAACGACCTGTTAGTAGATGAACGCCGCATTACC
ATCTCCATGCTCGTCCGTTTCCAATTCGAATCGATTCGATCCGGTTTGAG
TCGATGCTTTCAAGTCTCGAATCGGTAAACTTCGAGCCGTTCAGTTTTGG
TTTCTGCCCGATTCCTCCATTCCAACGGGGCAATTGGCAGGTGGAATCGT
TGGGTCGCAACCGGCAGCTGGAGGCGCTCGGCTACTTCAGCGAGCAATCG
TACTGGATCCGCTGCGAGGCGTGCGTGGAGGGTGGACGACAGCTGCAGAT
GGACGATGAAACAGATCCATCACCGAGGATGAGGACGACGAGCGTTACGT
GTGGAGGGCGTGGGGCCGAGGACTGTGAGGGAGACATGTCGGGCGCGGGT
AGCATAGAGAGCACGGCGTCTTCTCGGGGAATACCGAGGGTGCAAGAAAC
GATCCTGCTGAGAAACAGAAGCGGGGGTTGGAGTAGACAGGGAGGGCGGT
TTTGAGGATGGGGAAGGTGAAGGTGAAGATTCTGACGACGAGGAGGAGGA
TGACGAGGAAGAGGAAGAGGAGCCATTGTCGTTTGCGGTAGCGCTAACGT
TGCTTCAGGATCACCCTGCCGCGGACGAGGCGTTTCTTAAACCGAGGTGG
GTCAAGGAGGTTCGTTTGTGCTCGGTTGATTGCCCCTAGTAATTGTAATA
GTATATCTTGGTATTAACGCCGTGGTTTGGAGCGTTGAGGGCTTTTGTTT
GCTCCCAGCTGTTGTTCTGTTTCTCGTCACCGTCGAGGCAAAGCAAAGCA
AACTATAATATGGATAACCTCCCATGCTGCAAAATTTCGAGGGGGCATCG
AACGGCGTCGTTACCATCTCACAACAAGTATGTTTGCATTATAGCCGATG
GGCCTCATTCCATCCTGCCTGTGGTCCCTAAGGATCTTCCCATCTCTCCC
CAGTTCACGCCTTACGATTTTTTATCGCGATGCAAGTTCAGCACTCTTAC
AACTCGTCAACCAATGGTTGGATTTTACCTAGTCACGTTCTCACGCTTTC
CGTTACGAAAGAAAGAATTAAAATCCTGATTTAGTCAAGAATCGAACTCA
CGACCTCCGCACTATTAATAGCAGGTGTGCAGGTTACCTACTATTAATAG
ACTACTCGGGCAACGAGATGAGATGACTAATATGTCAAAACATTAAATGT
GTCGCTATCATTTCTGTGTTTCAGTGTTTGGTGTCATAAACGGCCGTCAG
AGGATGAGTGATAACAACGACTGATGCCGTTGGGCAGACGGGTGCGATTT
TGTTTTGTTTTGGCATAGCGTGACTTGTTTAGTTTTAGTTATTTTATGTT
TGTTATTATATGTTATTTTATCATGTTATTTTATCATGTTATTGCAGGGA
CGAGGCCTCGTCGGGATCATCGTCGCTCGGAAAGAGGTCTCGTGGGTCGA
GCGCCTGCAGCGTGGAGCTGATCGCCGCCAAGGTGCAAGCAGGGAGATAC
CGAAGCGCCGTGGCCTTCGAGAGTGACGCACGGCAGCTGCTCACCCAAGG
GGGTCCTCGAAGTATCAGCCCCGGCCAGGTGAATACTTACTGTCTTGTAC
TATAATTAAGTATACATTCGTGGTGATTTTGGGCCTTTGGGCGTCTGGGT
ACTGTGTTTTGCTAGCTCCATGGTCCTGCGTATTACCTTTTCCGAGGGTG
TTCTAGTTCTCGAGTACTAAAAAAACAAAAACAAAGGTGTAGTTGTAGAA
GCTAACCTCTATGCCCGGGTACCATATTTTGCGGTAACGCGGTCTGCCTC
AGCCACAGTTAAGGGAGATGCTTCTGTTTGTCGGGTTTTCCCAATGAGAA
AAAAAAACCAACGCCGCTTGTCCCCCCGCCGTCTGAACGCCGTTCCTACC
CCTTGTGAAAACCTTGGTGCCCTGGTGTTACCGACCCCCTGCGCAGAAGC
AACTGGTGGAGTACTTCGAGCAAGAGATCTTACCGCGACTGCGTAAGGCT
TGACGGAGCAGCACGATGATGTATCTGATTATATGAATATTGTCCCCTCC
TTGGTATGTTACTAGCCTAGAGTGTAGACCTATGCATGGCGATGAATCGT
CGGGGGGCTGTTTAGTGGATCCGATTGTGACTTATGTGTTAAGAGTAGAG
TGTGTGAGTCTGCGGATGCGTGTGATTCGCGCTCAGCTTTGTAGCATGCT
CCCGTGTCTGTGCGGCATCCATCGAACGGGATCCGTCCTTCTTTTTTTGG
GGGGTCATCGAAGCTCTGTACATTTTTTGACAAGGATTGGTATACGGTAG
GGTAAAGCAACTAACTCATGGTTGGGGTGGTATAGGGATTGGTGTTGACT
ACGTGGGAACACGTGAACATCGGCCGCGCATTATAGGGGGATGCCTCAGC
GGGCTTGGCCCCGTAGTAACAGATGGCAGTGCAGCTGTGTCCACGTGTCT
ACATGCCTTGCAGAAACACGCCGAGAAAAACATCGAACTCTTTTTCTTTT
AATCTTTACGTGCCTTGAATGTACCACAGTGTCTTAAACTTACAGATGCC
CCGACCTCGTGAGGAGCTATTTATAGTGTCGAAGCAAACAAATGAACTTT
TTGTTTTACTTGGGCTAGGGTAGACTATGATAACCGAGAGGATAACCAAG
CTTATCCGCTTCCGTGTATTCCGTGTGGCGTAGAGAGATTTGAACCCGAG
TATTCCTTAGTCTGCTCTGCGCCACTGTAGAGGAAGTTTGTTTATTTGGT
TGTAGATGGGAGAGGGAGCGATCAAAAGGTTCGCTCGAGGGAGGGGCGCG
AGAAACCCCTCCCCATATTTCGAACGCCTCCGTCGAATTGGGGATCGAAG
GATTGGGGGAGTCGAGTTGAGCGGATCCTCTCTAAGGGTTGTATGCCTCG
GAAAGCAAGCAGTGTCAGCATTTTGTCTTCGTCCGAATGTTGCCGGAATT
GTTTGCGTTAGGTGTAACAACGCGTGTTCAAAGACAGGGTTGATTAATAG
GGCCTGAAAGGCACGATTCTTGGATACTATGCTTTGTTTTGCTTTGCATT
TTATATATACCGGTGGGTTTGGCTCTCGTTGCGACACAGTCGTTGGTTGC
TGGTTGGTAGCTACTGCGTCCCGCAATTTATTTAACTGCGTTCTCTCTAC
TTCGCCGATTTTTCTTTTCTCTCAAGTGTGAGCGCTGATTTCTTTTTTCT
TTTTTCTCTTCTCTTTTCTTTTTTATTGTGTGTGCAGCGAAAACATCGTG
CGTCCTCCTTCCCATATGGTGCGGGGTGCGTGTGGTTGGTTTTGTACGTT
GGTCTGTAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig943:323612..328721-

>mRNA_F-serratus_M_contig943.20801.1 ID=mRNA_F-serratus_M_contig943.20801.1|Name=mRNA_F-serratus_M_contig943.20801.1|organism=Fucus serratus male|type=CDS|length=1512bp|location=Sequence derived from alignment at F-serratus_M_contig943:323612..328721- (Fucus serratus male)
ATGTTGGATGGTGCCGTCGAGCAGAAACGCATCGTGATGGTGGACAGCGA
TACCCCCGGAATCCGAGGTAAACTGGCCGTGCTGGCGGAGACAATGGTGG
ACTCGAGGCAGATGAAACATATGAAGATGTTGGATGGTGCCGTCGAGCAG
AAACGCATCGTGATGGTGGACAGCGATACCCCCGGAATCCGAGGTAAACT
GGCCGTGCTGGCGGAGACAATGGTGGACTCGAGGCAGATGAAACATATGA
AGGTTATAAACGGGGGCGTCAAGCAGCGGGCAAGAAAATGGCGGAGCATG
AAGATTTGCTTGCTGTGCGGCAAGGGCAACACGCGCCCCAAGGCGCTCTT
GTCCTGCGGGTTATAAACGGGGGCGTCAAGCAGCGGGCAAGAAAATGGCG
GAGCATGAAGATTTGCTTGCTGTGCGGCAAGGGCAACACGCGCCCCAAGG
CGCTCTTGTCCTGCGGCTTCTGCCCACGATCGTTCCACGCGGAGTGCCTC
GACGAAATGGCGGGGGCCAATGTGAAGACCTCCTCGCCCAACTCGGCGAT
GTTTGTGTGTCCTCAACACCGCTGTGTGGGGTGTACGAGGGCCACGGCGG
CTGCAGGGGGGCTGCTCTTCCGGTGTCAGACCTGCGTTAACGCGTTCTGC
GAGGACTGTCTGCCCGAGGATGAGCTTCTGCCCACGATCGTTCCACGCGG
AGTGCCTCGACGAAATGGCGGGGGCCAATGTGAAGACCTCCTCGCCCAAC
TCGGCGATGTTTGTGTGTCCTCAACACCGCTGTGTGGGGTGTACGAGGGC
CACGGCGGCTGCAGGGGGGCTGCTCTTCCGGTGTCAGACCTGCGTTAACG
CGTTCTGCGAGGACTGTCTGCCCGAGGATGAGGTGGAATCGTTGGGTCGC
AACCGGCAGCTGGAGGCGCTCGGCTACTTCAGCGAGCAATCGTACTGGAT
CCGCTGCGAGGCGTGCGTGGAGGGTGGACGACAGCTGCAGATGGACGATG
AAACAGATCCATCACCGAGGATGAGGACGACGAGCGTTACGTGTGGAGGG
CGTGGGGCCGAGGACTGTGAGGGAGACATGTCGGGCGCGGGTAGCATAGA
GAGCACGGCGTCTTCTCGGGGAATACCGAGGGTGCAAGAAACGATCCTGC
TGAGAAACAGAAGCGGGGGTTGGAGTAGACAGGGAGGGCGGTTTTGAGTG
GAATCGTTGGGTCGCAACCGGCAGCTGGAGGCGCTCGGCTACTTCAGCGA
GCAATCGTACTGGATCCGCTGCGAGGCGTGCGTGGAGGGTGGACGACAGC
TGCAGATGGACGATGAAACAGATCCATCACCGAGGATGAGGACGACGAGC
GTTACGTGTGGAGGGCGTGGGGCCGAGGACTGTGAGGGAGACATGTCGGG
CGCGGGTAGCATAGAGAGCACGGCGTCTTCTCGGGGAATACCGAGGGTGC
AAGAAACGATCCTGCTGAGAAACAGAAGCGGGGGTTGGAGTAGACAGGGA
GGGCGGTTTTGA
back to top