mRNA_F-serratus_M_contig92.20605.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig92.20605.1
Unique NamemRNA_F-serratus_M_contig92.20605.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:786642..793132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size409
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932661.92597-CDS-F-serratus_M_contig92:786641..7869451622932661.92597-CDS-F-serratus_M_contig92:786641..786945Fucus serratus maleCDSF-serratus_M_contig92 786642..786945 -
1690964410.0192919-CDS-F-serratus_M_contig92:786641..7869451690964410.0192919-CDS-F-serratus_M_contig92:786641..786945Fucus serratus maleCDSF-serratus_M_contig92 786642..786945 -
1622932661.94469-CDS-F-serratus_M_contig92:793028..7931321622932661.94469-CDS-F-serratus_M_contig92:793028..793132Fucus serratus maleCDSF-serratus_M_contig92 793029..793132 -
1690964410.0324938-CDS-F-serratus_M_contig92:793028..7931321690964410.0324938-CDS-F-serratus_M_contig92:793028..793132Fucus serratus maleCDSF-serratus_M_contig92 793029..793132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20605.1prot_F-serratus_M_contig92.20605.1Fucus serratus malepolypeptideF-serratus_M_contig92 786642..793132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig92.20605.1

>prot_F-serratus_M_contig92.20605.1 ID=prot_F-serratus_M_contig92.20605.1|Name=mRNA_F-serratus_M_contig92.20605.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MDPRNSLVSLLLLAGSSRVPAFGVSFRGDASPHRRQILGRRQSSRCTINR
HMLSSLNLGQDSSSASLTVNSTASRGRCIGQRSRSSRAGTTPLKSSLGTA
STGATLCDQCGEASGNSPGLTVCAAPGCGVWFAQCP
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mRNA from alignment at F-serratus_M_contig92:786642..793132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig92.20605.1 ID=mRNA_F-serratus_M_contig92.20605.1|Name=mRNA_F-serratus_M_contig92.20605.1|organism=Fucus serratus male|type=mRNA|length=6491bp|location=Sequence derived from alignment at F-serratus_M_contig92:786642..793132- (Fucus serratus male)
ATGGACCCTCGCAACTCTCTGGTTTCCCTACTTTTGCTAGCCGGATCATC
CAGAGTCCCGGCGTTTGGAGTAAGCTTCCGGGGTGATGCCAGCCCACATC
GCAGGTTAGTTCGACATACAGTCGGATAGTGCACCTGATTAGTCTCATTG
AAAGCAGACCTTTGGCGAAGATTGTGTGTGTGTGTTGTCATCCCATTATT
TATTGAGTTACATGATCCTGTGTCTACAGAGAAGATAGCACGATGGCAAA
TGGAAGATAGAGGTATGTACTCTGTACTAAAGGTACTCTAGTGTACTCTA
CGTACACCACCGGTACAGGTATTTACACCTGCAAGAGTTCGTCGTTCGAG
TGGTCTAGTAGGTAACCTGCTTACCTGCTAGTGCGGAAGTCTTGAGTTCG
ATTCTTAGCTTAATCAGAATTTGTGTTCTTTCTTTCGTAACGGAAAGCGT
GGGAACTTGAGTAAGTAAAATTCAACCATTGGTTGACGAGCTGTAAGAGT
GCTGAACTTGCATCGCGATAAAAAATTGTAAGGCGTGAACCGGGGAGAGA
TGAGAAGATCCTTTGTGACCACAGGCAGGATGGTAGTTAGAGGTCCATCG
GCTATAAGTGTGATTAAAAAAAAAAAAAAAAGAGTACGAATACGTCCTTT
CCTTCATTTCCTTGTACACCACTACAAATATTTACATTTTTTAAGTACGA
ATACCTCCTTTCTTTATTTTCCTTGTACACCAGTAGAAATATTTACACAT
TTAGAGGACGAGCCTCCTTTCCTTCATTTGTTTGATCTCGTTCGGATGTT
GTTGTTGTTGTCTTCACATTAAAAACCATTCCGATCTCTGCTCAGTACCT
TCCAACATCCCTACTGGTCCAACTGACGCGAACGCCTTCCGTGGTCACAA
GCTAACTACCCAAAAAGGGTACAATTACCCCCAAAAGGGTACAACTACCC
AAAAGGGTACACATTATGAGAAATCAAAGAAAAATAAAAGGACCCAGAAA
AGTCAACGCACGCCCGATAATACCATAGGCTCCAGACAGTCAGACGTGGC
AGGCGACATATCGGACAAAGGGGATAGATAGAGCCCATCGCTCCCACTCG
ACACGCGAGGCCAAGCAATATGAAACAAGCAAGAAAAATCAAGGATCACC
AACCAAGACAGTAATAAAATCGCAGGATTCTACCATTGTACCCCTCCTAG
GCCGGGGTATATTCGCCGCCGGGTTTGCACCGGCCAGGCCATTTCCTACA
GTAGAGCTTACGCTTTAGGTCGTAAAATGGTCTGCTGTCAGAAATCACTC
AGAAATAGAAACTTCTTTGAAAATGCGGGGCATGTTTCCTTTTCTTTTTG
TCAGCAGAGACGCAGACAAAACCATGCAAAACCAGCCCACATGGTACGTC
GATCAAGCGGCCAGCCATTTACTGGGACCACGCGGTCAGCTGGGGTGGGG
GGGGTTGGGTTAGCGTTAGCGATATTGGTCGGGTTGGCAAAAAATAGCGA
TATTGGCTCGATATTGGTCGGGTTGGTGTAGCGCCGCATTCCTATATATT
TCCTGTCAACCATTGTTTACGACCTAAAGCGTAAGCTCGCCTCATTTCCT
ATACACACGTACAAATGTGTGGGGGCTCAAGATCACGAAAGTCTCGTTCG
GTCGCACGTCGTCAGCTGGCCTCCTCTTCTTCCTTGTGCTAGGAGGTCAT
GATGTTTTCCGCTCCCTGCACCACCCCCTTGTGCCACGGCGCCCCATCGT
CCATCTTCGCTGCAAGGGTCCATACGGCTCTGTCAACTCCGAATGTGAGC
CGGCTGTCCACCGTAGAGCCGTCCGTGACTCCAATCGCTTGGAAGTCGTC
CTTGAGACAATCCAGACAGTTCTGCTCCGGGCGTCCCTTGCCTAGATCTC
CCCCCCCGACTAGTTTTCCGTCCATCAGCCGCTTCGGGAGGCGCCCGGCG
GGTTGCCTGGCCATGGCTCCCGCGAACAGAAGTCGCCGTTGTCGAATGGT
AGCTTCCACGCTTTGGCACCCAGTCTTTTTGAGGGCCTGAGCGTACGAAA
GCTTTCAGCAGGTGCCGCGCTCGCGACGGTACCCGATAACTCGCAGGATT
AGCCGGTGGTGTGTCCTCCTCAGTAACCGGTAGTGGTCGCGGCGGGGGGC
CCACGTCATGCATCCATATAGTAAGGCCTCCATTGCCTCCGCTCTCAACA
GCCGAACCTTAAGTCTCCACGTTGCTCTCGGTCAGTCGAAGAGCTCCCGG
GAGAACCTCCTGATGCTTGCCCACGCTGCTCTGCTCCGGTGGTTGACCTC
CTGCGTGAGCTCGCCATCTTCGTTGACAAAGCCGCCCAAGTATCGGAACT
GGGCGGTCTGAGCGTACTTTTGCCCCGCTGCTTCGATGACCAGTGGTGGT
GGCGACGATCTCCCTTTCTTCGACTGCTTCTCTTGTACCCGCATCAAGAG
AGTCTCTGTCATCTTCTCCGACACTGTCAGGCCAAATGCCCCAAACACTT
CCACGATTATGGTCATCATCGTCGTCGACCCTTCCTGGGATCTCGATACG
ACGCCGGCGTCGTCGGCATACAACATTCCCCACACCGCTCTCCGCGCGCG
TTCTAACGGTATCCCCGCCCCCGCCCCCGCCCCATCCTCCTCTTCGAGGT
ACACCAGATCCTTTAGGATGGTGTCGTCCTCGCTAAAACGCACAAGAACA
ACCTCGATCGCCGCTGCAAGGAAAATGTTGAACAGTAGCGGAGGTAGCAC
ATATCCTTGCCTCAATCCCTGCGTAACCTCGAACCAGTCCGAGAGTTCCC
CGTCGTCCATGCGCACCCGAGCCTGCATGACGTCGTGGAACTGGCGGATA
ACTGCGATCATCTCCTCCGGGACACCGACTCGGGCCAGCACTTTCCACAG
CAGCTCTCGGTCGACCGAATCGTAAGCCTTCTGGAGGTCAACGAAGCACA
TGTACAGCGGTATTCTCCGCCGTCGCGCCAGTTCCTGAAGTCGACGCACT
ACGAACAGCACGTCGACGGTGGATCGTTCCGGTCGGAAGCCGCACTGTTT
GTCTGGTAGAATGCCGTGGGCTTCGCAGTAGTCCCTGAGGCGGTTGGCTA
CGATCTTCAGAAGCACTTTGCCTGCGTGCGAGAGAAGTGAGACCCCCCTG
TAGTTATTACAGTTGGATCGGTCCAACTTCTTATAGAGCACCTTGATGGT
GACGTCTTTCAACTGTTGCGAGACTTCCCCTCAATTCCACACTTCGACAA
GAATGGCATGGAAACGTTCGAGAACGATGGGCTCGGCGGGTTCATCGATC
TTGAGTAGCTCTACCACGAAGGAGTCAGGGCCAGGCGCTTTCCAGTTGTG
CATCCCCCGGACTGCTCGTCTTGTCTCCTCCAGCGTTGGAGCCGATCCAA
ACGATACCAAGTCTCCGGTGGTTGGTGCTGCCGGTCGTCGCTGCACCTCC
TCGATGATGGCTGGGTTCAGCTTGGGGGATTTAGTGTTGAGGAGAGTGCT
GAAGAACCTCGCCCACCGTTGGAGGATGTCTCCCTTCTCCTTCAGCAAAA
TACCGTTCTCGTCCTTAACATACTGCTGCCCCCCCCCGATTGCCTCCCGC
CAAGGCCTGCCGAATTCTTGAGGTGTTTGTACAGGCCTCTCATGTCGCGT
TCCTTGTACATCGCTTCTAGCCTCGTCACATATATCTATAGGTGAGCATG
GATGCCTTTGTCGACTGCTGTACGTACCCCTTTGCACGCCGCTCTGAGTG
TTTTCCTTGCTGCTGGGGTACGGTTGCTCTTCATCAGTCGGCGTGCCTCC
CGTCGCTTGGCAAGAGCTTCCTCTACTGCTGCTCTCGTTTCCGGGCTTTC
ACACCACTTCGGGCATACGTGGTATCCGTCTCTCTGTCGGGAGCACTGTC
TGCGCTGCTTCGAGGATAGCTTCGGTAAACTCCCTCGCGGCCTCCGATGA
GGTGGTGTTTGGCTGGTCCGTTTGCTCGCCAAGGTCGTGTAGGAACCTCT
CGACCACGTGTCACCGCGACATTTCGACCTGCAACTCCTGTCGGCTGAAC
TGCCGCTGCTTCGACTTGGCCCGTACGGCGCGGTTGTGGGCGATTCGGCC
ACCGAGATCGGCAGTAGCTATTACCATATTGTAGTCCGAGTCCGCTTTAG
CCGGGAGTGCGGGTTGGGGGTGTACAACCACGTTGAGTAATCTACCTCGA
TGTGCCTGCCGCGTGAGTACGTAGTCAATGCGTTTGAAGTCGCTCGTGCG
GCTCCCTGTGACACCGTTGTGTGGGTGCGAAACTCCGCCTTTACGCGTAC
TGAAGAAGGTGGTCATGGTGGCTAGTTTGTTGTCGGTAGCAAAAGACAGC
AATAGCTTGCCGTTATCGTTCAGCTCATTGCGTCCATAAGTGCCTATTAA
TAGAATCCCTTCGTCCTGTATACTCTCTCCTCCTACCTCATATCCTCCTC
CTGTTCGCGTCCAGTCGCGTCCATCAGCACATACACGCACTCCTTTGCCG
GGATCCTGTGTACGAGACTGTCAAGTCTATCCCAGAACGCTTGCTTGGTT
TCGTCTTAAGTCGACCCTTCTGCCTCGCCCGGGCCACCTGTGTTGCTTTC
CTAGCACGCCTACGCTTAGCCCGGCCCCTCCTCCTCTTCTTCCTGCTCAT
TTTCTTTGTTTTTGTTTTATCGCGCTGTGCAGACTCTCTGGCTGAATTTG
TCAGCCCGGTGCTTATCTTGGTTCACGGGTAGGTTCAACCCTCCTACTCC
GTCCGACTCTACTCCTTCCTCGCTTTTATGTTGTTGCATACCCGCGCAGT
GTGCGGCCTTTCCATTCCTATCTGGGCTATCCCCACTGCGCTCTCCGCTG
CTGCATAGCCGCGGTGTCCATGCCGGGGCATTGGGGTTCAACCCCATGCT
GCTGCCAAAGTTGGACCGACAGGAGATACCCCGATCTCGCGATCGCGGTA
ACTTATATCTATCAAACTCAGGATCCCCGTCAATACGAGGCTCGGGCTCG
TGTCTCCGTCTTTGTATGGTGGTCTTTGCGTGCTTATGAGCTGAGTTTTT
CTTTACGATTTGTATAGGTTTCCTATCCAGCGGACCACGGACCGGATTGG
CAACCTCTTAGCATCACTGTACTGGGTATATTGTAGAAGGCGCATATTGA
TTTTTAAAGAAAAATCTGAACGCAAAGAGCTACAACTATTAGTCTAATAC
GTACATACCGGTAGGCTCTAGACTATACTATGTAAACGCTACTTTTTTGG
GTCCAAGTTAGGGAGAAAAGTTGTAAAATCGTTTAGGTGGGGACAGCCTG
CGAGAGCAAATATTCTCGGTGGGGTTCAAACGGGTTCCCCAATGATAGTA
GTATAGGGTTTGTGTGTGTGTGTGTGTGTGTGTGCGTTTCTGTGTGTGTA
TTTACTAAAGTGCACATGACCGCGTAGTCCGGCCCTGTCATCCTTGTCAT
TCTTTGCCATTGGGAGAATGATACTCGTTACGAAGACCTCTGTTCATCGC
GACAAAGGAGGCACGCTCTCTCTCCAGTTGTTATTTAAGCCCCGAGCGCC
TTGCGCTTCCTTGTCTACTTCCCTTCCCTTCCTTTCCTTTCCATTAATAT
TCTCTGGATGTTCGTTGACATCTACTGAACCAGCACCCTCTTGTCAGCGT
TTGTTTTCCTCCTTCGACCCGACTAATATTGCGATTGTCTGGGCACTGCT
GTTTCTAAAATGACAAAATCACTCAAATTACACTATTATTAGGTCCAATA
TCATAGTCTATAGTCTCGTCACTCTGGCTGGTGAGCCAATGCCGTTCATC
GGCGACACGTGAACATGCCCCTAATGTTTTCATAGGGTGTACAGTACTGA
TTCCCGGCAACCATTGCAACCATTCGAATGACACCCCCATGATATTCTCA
CGGCCCTGCCCTCCCTATGCTACTACCGCTGGGTAACCCGACTGAATCCC
ATGAATCGTTTTTGTCCTTGCAGTCAGTGTTCCTACCTAAACGTTTCGAC
AATTTTGTCCCCTGACTTGATGAATGAAATGCTCTATTATATTGAAATGA
ATATAAGGTTTAAATGCGTTCAGATTTTTCTTTTCCATTTACGGCTCACC
CTAAATCAATCGATACACCGTTTTTTGTATGAATATTTTCCATGGGGGGT
TTCCTTTTGCCCACTGCCGTCCGAACCTGAACCACAGACAGATCCTCGGA
CGACGACAATCATCACGATGTACTATTAACAGGCACATGTTGTCCTCTCT
CAACCTCGGCCAGGACAGCAGCAGCGCCAGCTTAACCGTCAACTCAACCG
CATCGCGCGGACGATGTATCGGGCAACGGTCGAGGTCGTCACGGGCGGGG
ACGACTCCGTTGAAATCTAGTTTGGGTACTGCTTCGACCGGAGCGACGCT
GTGCGATCAGTGCGGGGAAGCGAGCGGGAACTCCCCCGGACTGACGGTAT
GCGCGGCTCCCGGGTGTGGCGTGTGGTTCGCGCAGTGCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig92:786642..793132-

>mRNA_F-serratus_M_contig92.20605.1 ID=mRNA_F-serratus_M_contig92.20605.1|Name=mRNA_F-serratus_M_contig92.20605.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig92:786642..793132- (Fucus serratus male)
ATGGACCCTCGCAACTCTCTGGTTTCCCTACTTTTGCTAGCCGGATCATC
CAGAGTCCCGGCGTTTGGAGTAAGCTTCCGGGGTGATGCCAGCCCACATC
GCAGATGGACCCTCGCAACTCTCTGGTTTCCCTACTTTTGCTAGCCGGAT
CATCCAGAGTCCCGGCGTTTGGAGTAAGCTTCCGGGGTGATGCCAGCCCA
CATCGCAGACAGATCCTCGGACGACGACAATCATCACGATGTACTATTAA
CAGGCACATGTTGTCCTCTCTCAACCTCGGCCAGGACAGCAGCAGCGCCA
GCTTAACCGTCAACTCAACCGCATCGCGCGGACGATGTATCGGGCAACGG
TCGAGGTCGTCACGGGCGGGGACGACTCCGTTGAAATCTAGTTTGGGTAC
TGCTTCGACCGGAGCGACGCTGTGCGATCAGTGCGGGGAAGCGAGCGGGA
ACTCCCCCGGACTGACGGTATGCGCGGCTCCCGGGTGTGGCGTGTGGTTC
GCGCAGTGCCCCACAGATCCTCGGACGACGACAATCATCACGATGTACTA
TTAACAGGCACATGTTGTCCTCTCTCAACCTCGGCCAGGACAGCAGCAGC
GCCAGCTTAACCGTCAACTCAACCGCATCGCGCGGACGATGTATCGGGCA
ACGGTCGAGGTCGTCACGGGCGGGGACGACTCCGTTGAAATCTAGTTTGG
GTACTGCTTCGACCGGAGCGACGCTGTGCGATCAGTGCGGGGAAGCGAGC
GGGAACTCCCCCGGACTGACGGTATGCGCGGCTCCCGGGTGTGGCGTGTG
GTTCGCGCAGTGCCCC
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