mRNA_F-serratus_M_contig92.20605.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig92.20605.1
Unique Name	mRNA_F-serratus_M_contig92.20605.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig92.20605.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig92.20605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig92	contig	F-serratus_M_contig92:786642..793132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	chloroplast
Exons	2
Model size	409
Cds size	408
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932661.92597-CDS-F-serratus_M_contig92:786641..786945	1622932661.92597-CDS-F-serratus_M_contig92:786641..786945	Fucus serratus male	CDS	F-serratus_M_contig92 786642..786945 -
1690964410.0192919-CDS-F-serratus_M_contig92:786641..786945	1690964410.0192919-CDS-F-serratus_M_contig92:786641..786945	Fucus serratus male	CDS	F-serratus_M_contig92 786642..786945 -
1622932661.94469-CDS-F-serratus_M_contig92:793028..793132	1622932661.94469-CDS-F-serratus_M_contig92:793028..793132	Fucus serratus male	CDS	F-serratus_M_contig92 793029..793132 -
1690964410.0324938-CDS-F-serratus_M_contig92:793028..793132	1690964410.0324938-CDS-F-serratus_M_contig92:793028..793132	Fucus serratus male	CDS	F-serratus_M_contig92 793029..793132 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig92.20605.1	prot_F-serratus_M_contig92.20605.1	Fucus serratus male	polypeptide	F-serratus_M_contig92 786642..793132 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig92:786642..793132-
coding sequence from alignment at F-serratus_M_contig92:786642..793132-

protein sequence of mRNA_F-serratus_M_contig92.20605.1

>prot_F-serratus_M_contig92.20605.1 ID=prot_F-serratus_M_contig92.20605.1|Name=mRNA_F-serratus_M_contig92.20605.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MDPRNSLVSLLLLAGSSRVPAFGVSFRGDASPHRRQILGRRQSSRCTINR
HMLSSLNLGQDSSSASLTVNSTASRGRCIGQRSRSSRAGTTPLKSSLGTA
STGATLCDQCGEASGNSPGLTVCAAPGCGVWFAQCP

mRNA from alignment at F-serratus_M_contig92:786642..793132-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig92.20605.1 ID=mRNA_F-serratus_M_contig92.20605.1|Name=mRNA_F-serratus_M_contig92.20605.1|organism=Fucus serratus male|type=mRNA|length=6491bp|location=Sequence derived from alignment at F-serratus_M_contig92:786642..793132- (Fucus serratus male)
ATGGACCCTCGCAACTCTCTGGTTTCCCTACTTTTGCTAGCCGGATCATC
CAGAGTCCCGGCGTTTGGAGTAAGCTTCCGGGGTGATGCCAGCCCACATC
GCAGGTTAGTTCGACATACAGTCGGATAGTGCACCTGATTAGTCTCATTG
AAAGCAGACCTTTGGCGAAGATTGTGTGTGTGTGTTGTCATCCCATTATT
TATTGAGTTACATGATCCTGTGTCTACAGAGAAGATAGCACGATGGCAAA
TGGAAGATAGAGGTATGTACTCTGTACTAAAGGTACTCTAGTGTACTCTA
CGTACACCACCGGTACAGGTATTTACACCTGCAAGAGTTCGTCGTTCGAG
TGGTCTAGTAGGTAACCTGCTTACCTGCTAGTGCGGAAGTCTTGAGTTCG
ATTCTTAGCTTAATCAGAATTTGTGTTCTTTCTTTCGTAACGGAAAGCGT
GGGAACTTGAGTAAGTAAAATTCAACCATTGGTTGACGAGCTGTAAGAGT
GCTGAACTTGCATCGCGATAAAAAATTGTAAGGCGTGAACCGGGGAGAGA
TGAGAAGATCCTTTGTGACCACAGGCAGGATGGTAGTTAGAGGTCCATCG
GCTATAAGTGTGATTAAAAAAAAAAAAAAAAGAGTACGAATACGTCCTTT
CCTTCATTTCCTTGTACACCACTACAAATATTTACATTTTTTAAGTACGA
ATACCTCCTTTCTTTATTTTCCTTGTACACCAGTAGAAATATTTACACAT
TTAGAGGACGAGCCTCCTTTCCTTCATTTGTTTGATCTCGTTCGGATGTT
GTTGTTGTTGTCTTCACATTAAAAACCATTCCGATCTCTGCTCAGTACCT
TCCAACATCCCTACTGGTCCAACTGACGCGAACGCCTTCCGTGGTCACAA
GCTAACTACCCAAAAAGGGTACAATTACCCCCAAAAGGGTACAACTACCC
AAAAGGGTACACATTATGAGAAATCAAAGAAAAATAAAAGGACCCAGAAA
AGTCAACGCACGCCCGATAATACCATAGGCTCCAGACAGTCAGACGTGGC
AGGCGACATATCGGACAAAGGGGATAGATAGAGCCCATCGCTCCCACTCG
ACACGCGAGGCCAAGCAATATGAAACAAGCAAGAAAAATCAAGGATCACC
AACCAAGACAGTAATAAAATCGCAGGATTCTACCATTGTACCCCTCCTAG
GCCGGGGTATATTCGCCGCCGGGTTTGCACCGGCCAGGCCATTTCCTACA
GTAGAGCTTACGCTTTAGGTCGTAAAATGGTCTGCTGTCAGAAATCACTC
AGAAATAGAAACTTCTTTGAAAATGCGGGGCATGTTTCCTTTTCTTTTTG
TCAGCAGAGACGCAGACAAAACCATGCAAAACCAGCCCACATGGTACGTC
GATCAAGCGGCCAGCCATTTACTGGGACCACGCGGTCAGCTGGGGTGGGG
GGGGTTGGGTTAGCGTTAGCGATATTGGTCGGGTTGGCAAAAAATAGCGA
TATTGGCTCGATATTGGTCGGGTTGGTGTAGCGCCGCATTCCTATATATT
TCCTGTCAACCATTGTTTACGACCTAAAGCGTAAGCTCGCCTCATTTCCT
ATACACACGTACAAATGTGTGGGGGCTCAAGATCACGAAAGTCTCGTTCG
GTCGCACGTCGTCAGCTGGCCTCCTCTTCTTCCTTGTGCTAGGAGGTCAT
GATGTTTTCCGCTCCCTGCACCACCCCCTTGTGCCACGGCGCCCCATCGT
CCATCTTCGCTGCAAGGGTCCATACGGCTCTGTCAACTCCGAATGTGAGC
CGGCTGTCCACCGTAGAGCCGTCCGTGACTCCAATCGCTTGGAAGTCGTC
CTTGAGACAATCCAGACAGTTCTGCTCCGGGCGTCCCTTGCCTAGATCTC
CCCCCCCGACTAGTTTTCCGTCCATCAGCCGCTTCGGGAGGCGCCCGGCG
GGTTGCCTGGCCATGGCTCCCGCGAACAGAAGTCGCCGTTGTCGAATGGT
AGCTTCCACGCTTTGGCACCCAGTCTTTTTGAGGGCCTGAGCGTACGAAA
GCTTTCAGCAGGTGCCGCGCTCGCGACGGTACCCGATAACTCGCAGGATT
AGCCGGTGGTGTGTCCTCCTCAGTAACCGGTAGTGGTCGCGGCGGGGGGC
CCACGTCATGCATCCATATAGTAAGGCCTCCATTGCCTCCGCTCTCAACA
GCCGAACCTTAAGTCTCCACGTTGCTCTCGGTCAGTCGAAGAGCTCCCGG
GAGAACCTCCTGATGCTTGCCCACGCTGCTCTGCTCCGGTGGTTGACCTC
CTGCGTGAGCTCGCCATCTTCGTTGACAAAGCCGCCCAAGTATCGGAACT
GGGCGGTCTGAGCGTACTTTTGCCCCGCTGCTTCGATGACCAGTGGTGGT
GGCGACGATCTCCCTTTCTTCGACTGCTTCTCTTGTACCCGCATCAAGAG
AGTCTCTGTCATCTTCTCCGACACTGTCAGGCCAAATGCCCCAAACACTT
CCACGATTATGGTCATCATCGTCGTCGACCCTTCCTGGGATCTCGATACG
ACGCCGGCGTCGTCGGCATACAACATTCCCCACACCGCTCTCCGCGCGCG
TTCTAACGGTATCCCCGCCCCCGCCCCCGCCCCATCCTCCTCTTCGAGGT
ACACCAGATCCTTTAGGATGGTGTCGTCCTCGCTAAAACGCACAAGAACA
ACCTCGATCGCCGCTGCAAGGAAAATGTTGAACAGTAGCGGAGGTAGCAC
ATATCCTTGCCTCAATCCCTGCGTAACCTCGAACCAGTCCGAGAGTTCCC
CGTCGTCCATGCGCACCCGAGCCTGCATGACGTCGTGGAACTGGCGGATA
ACTGCGATCATCTCCTCCGGGACACCGACTCGGGCCAGCACTTTCCACAG
CAGCTCTCGGTCGACCGAATCGTAAGCCTTCTGGAGGTCAACGAAGCACA
TGTACAGCGGTATTCTCCGCCGTCGCGCCAGTTCCTGAAGTCGACGCACT
ACGAACAGCACGTCGACGGTGGATCGTTCCGGTCGGAAGCCGCACTGTTT
GTCTGGTAGAATGCCGTGGGCTTCGCAGTAGTCCCTGAGGCGGTTGGCTA
CGATCTTCAGAAGCACTTTGCCTGCGTGCGAGAGAAGTGAGACCCCCCTG
TAGTTATTACAGTTGGATCGGTCCAACTTCTTATAGAGCACCTTGATGGT
GACGTCTTTCAACTGTTGCGAGACTTCCCCTCAATTCCACACTTCGACAA
GAATGGCATGGAAACGTTCGAGAACGATGGGCTCGGCGGGTTCATCGATC
TTGAGTAGCTCTACCACGAAGGAGTCAGGGCCAGGCGCTTTCCAGTTGTG
CATCCCCCGGACTGCTCGTCTTGTCTCCTCCAGCGTTGGAGCCGATCCAA
ACGATACCAAGTCTCCGGTGGTTGGTGCTGCCGGTCGTCGCTGCACCTCC
TCGATGATGGCTGGGTTCAGCTTGGGGGATTTAGTGTTGAGGAGAGTGCT
GAAGAACCTCGCCCACCGTTGGAGGATGTCTCCCTTCTCCTTCAGCAAAA
TACCGTTCTCGTCCTTAACATACTGCTGCCCCCCCCCGATTGCCTCCCGC
CAAGGCCTGCCGAATTCTTGAGGTGTTTGTACAGGCCTCTCATGTCGCGT
TCCTTGTACATCGCTTCTAGCCTCGTCACATATATCTATAGGTGAGCATG
GATGCCTTTGTCGACTGCTGTACGTACCCCTTTGCACGCCGCTCTGAGTG
TTTTCCTTGCTGCTGGGGTACGGTTGCTCTTCATCAGTCGGCGTGCCTCC
CGTCGCTTGGCAAGAGCTTCCTCTACTGCTGCTCTCGTTTCCGGGCTTTC
ACACCACTTCGGGCATACGTGGTATCCGTCTCTCTGTCGGGAGCACTGTC
TGCGCTGCTTCGAGGATAGCTTCGGTAAACTCCCTCGCGGCCTCCGATGA
GGTGGTGTTTGGCTGGTCCGTTTGCTCGCCAAGGTCGTGTAGGAACCTCT
CGACCACGTGTCACCGCGACATTTCGACCTGCAACTCCTGTCGGCTGAAC
TGCCGCTGCTTCGACTTGGCCCGTACGGCGCGGTTGTGGGCGATTCGGCC
ACCGAGATCGGCAGTAGCTATTACCATATTGTAGTCCGAGTCCGCTTTAG
CCGGGAGTGCGGGTTGGGGGTGTACAACCACGTTGAGTAATCTACCTCGA
TGTGCCTGCCGCGTGAGTACGTAGTCAATGCGTTTGAAGTCGCTCGTGCG
GCTCCCTGTGACACCGTTGTGTGGGTGCGAAACTCCGCCTTTACGCGTAC
TGAAGAAGGTGGTCATGGTGGCTAGTTTGTTGTCGGTAGCAAAAGACAGC
AATAGCTTGCCGTTATCGTTCAGCTCATTGCGTCCATAAGTGCCTATTAA
TAGAATCCCTTCGTCCTGTATACTCTCTCCTCCTACCTCATATCCTCCTC
CTGTTCGCGTCCAGTCGCGTCCATCAGCACATACACGCACTCCTTTGCCG
GGATCCTGTGTACGAGACTGTCAAGTCTATCCCAGAACGCTTGCTTGGTT
TCGTCTTAAGTCGACCCTTCTGCCTCGCCCGGGCCACCTGTGTTGCTTTC
CTAGCACGCCTACGCTTAGCCCGGCCCCTCCTCCTCTTCTTCCTGCTCAT
TTTCTTTGTTTTTGTTTTATCGCGCTGTGCAGACTCTCTGGCTGAATTTG
TCAGCCCGGTGCTTATCTTGGTTCACGGGTAGGTTCAACCCTCCTACTCC
GTCCGACTCTACTCCTTCCTCGCTTTTATGTTGTTGCATACCCGCGCAGT
GTGCGGCCTTTCCATTCCTATCTGGGCTATCCCCACTGCGCTCTCCGCTG
CTGCATAGCCGCGGTGTCCATGCCGGGGCATTGGGGTTCAACCCCATGCT
GCTGCCAAAGTTGGACCGACAGGAGATACCCCGATCTCGCGATCGCGGTA
ACTTATATCTATCAAACTCAGGATCCCCGTCAATACGAGGCTCGGGCTCG
TGTCTCCGTCTTTGTATGGTGGTCTTTGCGTGCTTATGAGCTGAGTTTTT
CTTTACGATTTGTATAGGTTTCCTATCCAGCGGACCACGGACCGGATTGG
CAACCTCTTAGCATCACTGTACTGGGTATATTGTAGAAGGCGCATATTGA
TTTTTAAAGAAAAATCTGAACGCAAAGAGCTACAACTATTAGTCTAATAC
GTACATACCGGTAGGCTCTAGACTATACTATGTAAACGCTACTTTTTTGG
GTCCAAGTTAGGGAGAAAAGTTGTAAAATCGTTTAGGTGGGGACAGCCTG
CGAGAGCAAATATTCTCGGTGGGGTTCAAACGGGTTCCCCAATGATAGTA
GTATAGGGTTTGTGTGTGTGTGTGTGTGTGTGTGCGTTTCTGTGTGTGTA
TTTACTAAAGTGCACATGACCGCGTAGTCCGGCCCTGTCATCCTTGTCAT
TCTTTGCCATTGGGAGAATGATACTCGTTACGAAGACCTCTGTTCATCGC
GACAAAGGAGGCACGCTCTCTCTCCAGTTGTTATTTAAGCCCCGAGCGCC
TTGCGCTTCCTTGTCTACTTCCCTTCCCTTCCTTTCCTTTCCATTAATAT
TCTCTGGATGTTCGTTGACATCTACTGAACCAGCACCCTCTTGTCAGCGT
TTGTTTTCCTCCTTCGACCCGACTAATATTGCGATTGTCTGGGCACTGCT
GTTTCTAAAATGACAAAATCACTCAAATTACACTATTATTAGGTCCAATA
TCATAGTCTATAGTCTCGTCACTCTGGCTGGTGAGCCAATGCCGTTCATC
GGCGACACGTGAACATGCCCCTAATGTTTTCATAGGGTGTACAGTACTGA
TTCCCGGCAACCATTGCAACCATTCGAATGACACCCCCATGATATTCTCA
CGGCCCTGCCCTCCCTATGCTACTACCGCTGGGTAACCCGACTGAATCCC
ATGAATCGTTTTTGTCCTTGCAGTCAGTGTTCCTACCTAAACGTTTCGAC
AATTTTGTCCCCTGACTTGATGAATGAAATGCTCTATTATATTGAAATGA
ATATAAGGTTTAAATGCGTTCAGATTTTTCTTTTCCATTTACGGCTCACC
CTAAATCAATCGATACACCGTTTTTTGTATGAATATTTTCCATGGGGGGT
TTCCTTTTGCCCACTGCCGTCCGAACCTGAACCACAGACAGATCCTCGGA
CGACGACAATCATCACGATGTACTATTAACAGGCACATGTTGTCCTCTCT
CAACCTCGGCCAGGACAGCAGCAGCGCCAGCTTAACCGTCAACTCAACCG
CATCGCGCGGACGATGTATCGGGCAACGGTCGAGGTCGTCACGGGCGGGG
ACGACTCCGTTGAAATCTAGTTTGGGTACTGCTTCGACCGGAGCGACGCT
GTGCGATCAGTGCGGGGAAGCGAGCGGGAACTCCCCCGGACTGACGGTAT
GCGCGGCTCCCGGGTGTGGCGTGTGGTTCGCGCAGTGCCCC

Coding sequence (CDS) from alignment at F-serratus_M_contig92:786642..793132-

>mRNA_F-serratus_M_contig92.20605.1 ID=mRNA_F-serratus_M_contig92.20605.1|Name=mRNA_F-serratus_M_contig92.20605.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig92:786642..793132- (Fucus serratus male)
ATGGACCCTCGCAACTCTCTGGTTTCCCTACTTTTGCTAGCCGGATCATC
CAGAGTCCCGGCGTTTGGAGTAAGCTTCCGGGGTGATGCCAGCCCACATC
GCAGATGGACCCTCGCAACTCTCTGGTTTCCCTACTTTTGCTAGCCGGAT
CATCCAGAGTCCCGGCGTTTGGAGTAAGCTTCCGGGGTGATGCCAGCCCA
CATCGCAGACAGATCCTCGGACGACGACAATCATCACGATGTACTATTAA
CAGGCACATGTTGTCCTCTCTCAACCTCGGCCAGGACAGCAGCAGCGCCA
GCTTAACCGTCAACTCAACCGCATCGCGCGGACGATGTATCGGGCAACGG
TCGAGGTCGTCACGGGCGGGGACGACTCCGTTGAAATCTAGTTTGGGTAC
TGCTTCGACCGGAGCGACGCTGTGCGATCAGTGCGGGGAAGCGAGCGGGA
ACTCCCCCGGACTGACGGTATGCGCGGCTCCCGGGTGTGGCGTGTGGTTC
GCGCAGTGCCCCACAGATCCTCGGACGACGACAATCATCACGATGTACTA
TTAACAGGCACATGTTGTCCTCTCTCAACCTCGGCCAGGACAGCAGCAGC
GCCAGCTTAACCGTCAACTCAACCGCATCGCGCGGACGATGTATCGGGCA
ACGGTCGAGGTCGTCACGGGCGGGGACGACTCCGTTGAAATCTAGTTTGG
GTACTGCTTCGACCGGAGCGACGCTGTGCGATCAGTGCGGGGAAGCGAGC
GGGAACTCCCCCGGACTGACGGTATGCGCGGCTCCCGGGTGTGGCGTGTG
GTTCGCGCAGTGCCCC