mRNA_F-serratus_M_contig92.20587.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig92.20587.1
Unique NamemRNA_F-serratus_M_contig92.20587.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.870e-54
Identity = 125/225 (55.56%), Postives = 140/225 (62.22%), Query Frame = 1
Query:    4 GSSSPSGQRREWERFNQNAERFERQRA-----------RRAACVSSKGGTWTPSS------------------GTPTSGC--------------------SLNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLS-GVSAEQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLVDRGFSPRRAMIEGIRGAFEIQLDG*G 528
            GS+SPSGQRR+WERF+ NAERFERQRA                 + + G W                      G   S C                    ++NPPTDA+KK LPPALRRRF EVYVPEL DR DLK+V D Y+S GVS + D LAFTAVDLYLWARGL+ ESLSDGAGQRPRYSLRTLVGA+S ARRLVDRGFS +RAM+EG R  FE QLDG G
Sbjct:   40 GSTSPSGQRRDWERFHSNAERFERQRAAVEGSFAFSFVEGVLVKAIREGKWVLLDEINLASAETLQRLSGLLEGAEGSLCLTERGDMNPVVRHKDFRLFAAMNPPTDASKKDLPPALRRRFSEVYVPELDDRVDLKQVVDGYISDGVSVDHDGLAFTAVDLYLWARGLSTESLSDGAGQRPRYSLRTLVGAVSCARRLVDRGFSAKRAMVEGYRSLFETQLDGDG 264          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A6H5JD74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD74_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 4.970e-54
Identity = 94/124 (75.81%), Postives = 106/124 (85.48%), Query Frame = 1
Query:  160 LNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLS-GVSAEQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLVDRGFSPRRAMIEGIRGAFEIQLDG*G 528
            +NPPTDA+KK LPP+LRRRF EVYVPEL DR DLK+V D Y+S GVS + + LAFTAVDLYLWAR L++ESLSDGAGQRPRYSLRTLVGA+S ARRLV RGFSP+RAM+EG R  FE QLDG G
Sbjct:   83 MNPPTDASKKDLPPSLRRRFSEVYVPELDDRLDLKQVVDGYISSGVSVDHESLAFTAVDLYLWARVLSSESLSDGAGQRPRYSLRTLVGAVSCARRLVQRGFSPKRAMLEGFRSLFETQLDGDG 206          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.020e-29
Identity = 111/300 (37.00%), Postives = 137/300 (45.67%), Query Frame = 3
Query:   78 KGAEGSLCLIERGDVDSIVRHADFRLFAESSHRRHQESLATGTAPTVL*GVCSRTGRSCGP*ARC*RLLIWCLGGARPPGIHGR*PLSMGQGP----RGGEFE--------RWCRTTTTIF-----PQDPCWSF-------------VRRSAFGRPWF*PSEGYD*RHPWGFRNPVGRVRSHVGILKAF-----GEDFSAKDIDKPPRRPGGRGGGSDPWVVIGPFWLEGGPLDPVDAA*LDACTKQRRFVLTASVHRTLRCLVRAAASSDSHVLLQGPTSAGKTSIVEYLSARLGHRCV 872
            +G++GSLCL+ERGD + I RH +FRLFA  +        A    P  L   C  T    G         +   G  R    H    LS G G      GGE           +CR            Q P +S                 +A   P     EG+          P  R   H  +LKAF     G       ++KPP RP G   G++ W ++GPFWLE GPL+  D A  +A T  RRFVLT +V RTLR L RA A S + VLLQGPTSAGKT++VEYL+AR GHRCV
Sbjct:  531 EGSDGSLCLMERGDTEPITRHPNFRLFAAMNP---PTDAAKKDLPPAL--RCRFTEVYVGE--------LTDRGDLRAVAAH---YLSRGAGVAALGEGGEARVATCVDVYLYCRKVAQEKLCDGGGQRPHYSLRSLCVALAAARALQAAAARASPARALLEGFAAAFETQLDAP-SRDLLHRSLLKAFMPKGGGXXXXXXXLEKPPPRPPG---GAEKWELVGPFWLEAGPLERRDWAQAEAATGLRRFVLTPAVERTLRDLARAVAVSKAPVLLQGPTSAGKTTLVEYLAARCGHRCV 810          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A7S1YT04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YT04_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.700e-27
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  160 LNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLSGV------SAEQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLV-DRGFSPRRAMIEGIRGAFEIQLD 519
            +NP TDA KK +PP++R RF E+YV ELVD  +L+ VA  YLSG       + EQ+H   TAVD+YL  R L+ +SL DG GQ+PRY++RT+  ALSA R LV ++ FSP RA++EG   +FE  LD
Sbjct:  423 MNPATDAGKKDIPPSMRSRFTEIYVDELVDPVELRSVAARYLSGAIETSSGNLEQNHTIMTAVDVYLNCRQLSEQSLVDGGGQKPRYTMRTMCRALSAGRNLVLEQRFSPTRAILEGFELSFEGPLD 549          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A7S4N8L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8L4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.400e-26
Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  160 LNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLSGVSA-------EQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLV-DRGFSPRRAMIEGIRGAFEIQLD 519
            +NP TDA KK LPPA+R RF E+YV ELVD  +L+ VA  YL G S        E      T+VD+YL  R LA  SL+DG+GQRPRY+LRTL  ALSAAR LV  + +  RRA++EG   AFE  LD
Sbjct:   64 MNPATDAGKKDLPPAVRSRFSEIYVDELVDPVELRTVAAKYLRGASVGGDGASLESSDAVLTSVDVYLKCRSLANRSLADGSGQRPRYTLRTLCRALSAARTLVRTQKWKLRRALLEGFELAFEGPLD 191          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: K0TEP4_THAOC (Midasin n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEP4_THAOC)

HSP 1 Score: 112 bits (281), Expect = 4.050e-24
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  160 LNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYL------SGVSAEQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLV-DRGFSPRRAMIEGIRGAFEIQLD 519
            +NP TDA KK LP ++R RF E+YV EL+D   L+ VA  YL      SGV  E      ++VDLYL  R L+ +SL+DG GQ+PRY+LRTL   L++AR L+  + F+P+RA++EG   AFE  LD
Sbjct: 1099 MNPATDAGKKDLPSSIRSRFTELYVDELLDSTQLRSVAARYLEGAVVTSGVPLEHTESVLSSVDLYLKCRSLSDQSLADGGGQKPRYTLRTLTRTLTSARNLILQQKFAPQRAILEGFELAFEASLD 1225          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A5D6XYG6_9STRA (VWFA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYG6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.730e-20
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  540 ILKAFGEDFSAKDIDKPPRRPGGRGGGSDPWVVIGPFWL-EGGPLDPVDAA*LDACTKQRRFVLTASVHRTLRCLVRAAASSDSHVLLQGPTSAGKTSIVEYLSARLGHRCV 872
            I   F +   AKD+ + P RPGGR   +D +V++  +W+ +GG LDP D +  D  T +++FVLT SV   LR L RAA      VLLQGPTSAGKTS++ YL+AR+G +CV
Sbjct: 1058 IKSTFAKTMKAKDLARAPPRPGGRAATND-FVLVSSYWVRQGGFLDPRDDSIADPVTNRKKFVLTKSVDENLRHLARAAVIGKYPVLLQGPTSAGKTSLIGYLAARIGQKCV 1168          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.330e-19
Identity = 89/220 (40.45%), Postives = 109/220 (49.55%), Query Frame = 1
Query:  160 LNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLS--GVSAEQDHLAFTAVDL---YLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLV--DRGFSPRRAMIEGIRGAFEIQL-DG*GPMSEY*RLSAKT-----SPRRTSIS-HQGDLAEEAE-------AVTLGW*LDLSGLRAVRWIPSMLRSWTLVPSSAGLF*RRPFTEPSA 756
            +NP  DA KK LPPALR RF EV V ELVD  DL+ V +   S  G            +DL   YL  R LA   L DGAGQRPRYSLRTL  AL+AAR L    +  +P RA++EG   AFE QL D   P+     L+A T     S R+T     + +L + A        +V+  W L +SG   +   P  LR W     S G   +R    PSA
Sbjct:  940 MNPANDAGKKELPPALRARFTEVEVTELVDPQDLRAVVERAWSARGGGXXXXXXGVDPIDLVQLYLRCRQLAESVLVDGAGQRPRYSLRTLTRALAAARALTAAPQLLTPVRALLEGFALAFETQLQDASRPLLRKELLAALTRASGASSRKTPPGLAEKELDQPARPPPSPDSSVSPSWVL-VSGPFWLPTGPLPLRDWNQEEGSGGPGTKRFILTPSA 1158          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A7S3VEM6_9STRA (Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEM6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.760e-18
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  540 ILKAFGEDFSAKDIDKPPRRPGGRGGGSDPWVVIGPFWLEGGPLDPVDAA*LDACTKQRRFVLTASVHRTLRCLVRAAASSDSHVLLQGPTSAGKTSIVEYLSARLGHRCV 872
            +    G+  S K++D P RRPG +    D +V+  PFW+  G L+ VD +   + + + RFVLT S+   LR L RA AS    VLL+GPTSAGKT++VE+L+AR GHRCV
Sbjct: 1142 LSSTLGKGLSKKELDHPGRRPGSKADSGD-FVLSKPFWICTGSLEKVDWSEASSKSSRSRFVLTPSMAVNLRRLTRAVASGPWPVLLEGPTSAGKTTMVEFLAARCGHRCV 1251          
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Match: A0A484E3U5_BRELC (VWFA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3U5_BRELC)

HSP 1 Score: 96.3 bits (238), Expect = 1.810e-18
Identity = 57/120 (47.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  160 LNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLSGVSAEQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLVDRGFSPRRAMIEGIRGAFEIQLD 519
            +NP TD  KK LPP+LR RF E+YV E  +  DL+ V    L  +      L    V  YL AR LA   LSDGA Q+PRYSLRTL  AL   R L+ RG+   RAM EG   +F  QL+
Sbjct:  935 MNPSTDVGKKDLPPSLRNRFTEIYVDECDNMLDLQMVVHQQLKEIVGA---LVPETVQFYLEARKLAEVRLSDGARQKPRYSLRTLCQALHITRILIQRGYGTSRAMFEGFCSSFCTQLE 1051          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL28_ECTSI1.870e-5455.56Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JD74_9PHAE4.970e-5475.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z947_9STRA1.020e-2937.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1YT04_9STRA2.700e-2751.97Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4N8L4_9STRA6.400e-2653.91Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
K0TEP4_THAOC4.050e-2448.82Midasin n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
A0A5D6XYG6_9STRA4.730e-2048.21VWFA domain-containing protein n=1 Tax=Pythium bra... [more]
A0A4D9D334_9STRA7.330e-1940.45VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S3VEM6_9STRA1.760e-1846.85Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
A0A484E3U5_BRELC1.810e-1847.50VWFA domain-containing protein n=1 Tax=Bremia lact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:215201..223381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue6.8e-50
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons7
Model size875
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20587.1prot_F-serratus_M_contig92.20587.1Fucus serratus malepolypeptideF-serratus_M_contig92 215201..218450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932662.7196772-CDS-F-serratus_M_contig92:215200..2152801622932662.7196772-CDS-F-serratus_M_contig92:215200..215280Fucus serratus maleCDSF-serratus_M_contig92 215201..215280 +
1690964410.441637-CDS-F-serratus_M_contig92:215200..2152801690964410.441637-CDS-F-serratus_M_contig92:215200..215280Fucus serratus maleCDSF-serratus_M_contig92 215201..215280 +
1622932662.7363873-CDS-F-serratus_M_contig92:217097..2172321622932662.7363873-CDS-F-serratus_M_contig92:217097..217232Fucus serratus maleCDSF-serratus_M_contig92 217098..217232 +
1690964410.4519265-CDS-F-serratus_M_contig92:217097..2172321690964410.4519265-CDS-F-serratus_M_contig92:217097..217232Fucus serratus maleCDSF-serratus_M_contig92 217098..217232 +
1622932662.7753448-CDS-F-serratus_M_contig92:217609..2178041622932662.7753448-CDS-F-serratus_M_contig92:217609..217804Fucus serratus maleCDSF-serratus_M_contig92 217610..217804 +
1690964410.4603693-CDS-F-serratus_M_contig92:217609..2178041690964410.4603693-CDS-F-serratus_M_contig92:217609..217804Fucus serratus maleCDSF-serratus_M_contig92 217610..217804 +
1622932662.790211-CDS-F-serratus_M_contig92:218335..2184501622932662.790211-CDS-F-serratus_M_contig92:218335..218450Fucus serratus maleCDSF-serratus_M_contig92 218336..218450 +
1690964410.4729195-CDS-F-serratus_M_contig92:218335..2184501690964410.4729195-CDS-F-serratus_M_contig92:218335..218450Fucus serratus maleCDSF-serratus_M_contig92 218336..218450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932662.8086474-UTR-F-serratus_M_contig92:218450..2184621622932662.8086474-UTR-F-serratus_M_contig92:218450..218462Fucus serratus maleUTRF-serratus_M_contig92 218451..218462 +
1690964410.4811647-UTR-F-serratus_M_contig92:218450..2184621690964410.4811647-UTR-F-serratus_M_contig92:218450..218462Fucus serratus maleUTRF-serratus_M_contig92 218451..218462 +
1622932662.827484-UTR-F-serratus_M_contig92:218786..2189671622932662.827484-UTR-F-serratus_M_contig92:218786..218967Fucus serratus maleUTRF-serratus_M_contig92 218787..218967 +
1690964410.4910345-UTR-F-serratus_M_contig92:218786..2189671690964410.4910345-UTR-F-serratus_M_contig92:218786..218967Fucus serratus maleUTRF-serratus_M_contig92 218787..218967 +
1622932662.8459537-UTR-F-serratus_M_contig92:220965..2210611622932662.8459537-UTR-F-serratus_M_contig92:220965..221061Fucus serratus maleUTRF-serratus_M_contig92 220966..221061 +
1690964410.5008872-UTR-F-serratus_M_contig92:220965..2210611690964410.5008872-UTR-F-serratus_M_contig92:220965..221061Fucus serratus maleUTRF-serratus_M_contig92 220966..221061 +
1622932662.861146-UTR-F-serratus_M_contig92:223322..2233811622932662.861146-UTR-F-serratus_M_contig92:223322..223381Fucus serratus maleUTRF-serratus_M_contig92 223323..223381 +
1690964410.51064-UTR-F-serratus_M_contig92:223322..2233811690964410.51064-UTR-F-serratus_M_contig92:223322..223381Fucus serratus maleUTRF-serratus_M_contig92 223323..223381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig92.20587.1

>prot_F-serratus_M_contig92.20587.1 ID=prot_F-serratus_M_contig92.20587.1|Name=mRNA_F-serratus_M_contig92.20587.1|organism=Fucus serratus male|type=polypeptide|length=175bp
SGSSSPSGQRREWERFNQNAERFERQRARRAACVSSKGGTWTPSSGTPTS
GCSLNPPTDATKKALPPALRRRFYEVYVPELVDRADLKRVADDYLSGVSA
EQDHLAFTAVDLYLWARGLAAESLSDGAGQRPRYSLRTLVGALSAARRLV
DRGFSPRRAMIEGIRGAFEIQLDG*
back to top

mRNA from alignment at F-serratus_M_contig92:215201..223381+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig92.20587.1 ID=mRNA_F-serratus_M_contig92.20587.1|Name=mRNA_F-serratus_M_contig92.20587.1|organism=Fucus serratus male|type=mRNA|length=8181bp|location=Sequence derived from alignment at F-serratus_M_contig92:215201..223381+ (Fucus serratus male)
AGTGGCTCGTCAAGCCCTTCCGGACAACGTCGAGAATGGGAGCGATTCAA CCAGAACGCGGAGCGATTCGAACGTCAAAGGTGAAAGTAGTCGAGCGGCA TTAAATTTTTTGGATTGAAAATGATTTAATTTTCAGTCCGTGGTCACAAG GTAGGAAAACACCATCCGGAAGTTGAAAGAAAACAAAAACGGAAAAGGCC GCAAACATTTCCACATTTGTAAAGTAATGCGTGTGGCTGTCGGGGCGACA TGCATACAGTATTCATATCATATGCATACACATACCAGGTAGTGTCCCAA AGAACGAAACAAAACAACCTTTTTTTTATGAAGCCTCCTCGAAACTACAG GCAAGAGACGAAGCTCCTTTCCTTTCCTCGATCTCTTTGGCTGCGATGAA TTAAATTTGAATTTTTGCTGATAGTTTTCAGTTGCAGTACTGTACCCAAA AGGAATAATCTAGTCTAGTATATGGTTGGTTTAGTTTTTTGGTGAAGCGT GCTCACGCGCTCCCGCGAGTTCCAAATTTGTCTTGAACCTGAAAGCAACA CGTAATGTCACCTGACTGTTTACTACAGCATTATTGTGTCGACGTGCTGT ATACCAATAATCAAGAAGCTGCGTGGTATGGCACTCATTTTTTCTGTTTG GTATGTATTGCTTTTCTTTTTTTCTGTTTGGTATGTAATACTTTTCTTTT TCTGTTTGGCCGTGGAGGGGTCGTTTGCGTTCTCCTTCGTGGAAGGCGTT CTTATGAAGGCTCTTATGTTCTTATGTTCTTATGAAGGCTCTTCGGGAGG GAAAATAGGTTTTGCTCGACGAAATCCACCTGGCCTCGGCAGAAACTCTC CAATGTCTTTCGGGTCTTCTGGAGGTGACCCACTTCTATAAAAAAAGTTG AAATACTGTCAAAACATCACGATCCCGTATTATATTAAACAACAGACTAT TAATAGTATATTATAGTACTGTAATAAGTATTAAGGAACACTTGTAATAT CAATGTCAATGTAAGGTGAGTTTGTGTTAACGGTCTTACCCGATCGAAGC GTGTTTTCCAACAGGGAATATGAAATGTTGAACACGGAATGTTTACAAAA TAATTTGTAAAAAATCGCACTATGACTAAAGAAATCTTCTATATACTGAA GTGTTGATAGTATTAGACCGTCCCTACAGTATTTAATAGGAAAACCAAAT AATTTAGCAGGACATTACAAAAGCAGCTGAGTACAAAATCAATTGAGTAC ATCAATTAAGGACACTTGACTACTTGTCTGTGATGAGATAATCCGCCGGG TTTTTTTTTTTACATGATGAGAATATCCTCCTTGTTATTGCGTCACAATC CTGGCCTTTGCTCGGTCTTTGAACGTTATACAGTTTCTCGAAGGCATGGC TTTTTGCTTCGTCTCGTCGCGTGCAATATCATCCCCGTAGCCCGTTATTT TACTGAACGTCTCGAGAAACAAGTTCAACACCCCCATCACAAATCTGTAA TGGGAGACATTATTTGAGAAGGGGAACATCCCATTATTGTCCTTTTCCAC ACTATTACACTATTCGGAGGCATTTTTTCGCGGAAGTGATATTATAAACC AGCTACTCTGAAACATGACGCTTAGTCTCGTCGCATGCCGGGGTACCCCT GGCCCATGTCGACTCCTTACTAGATGGACTGATCCGCATTGTTGTCTTCC TATACAGTACCAATGTTTCAGTGTTGGTGAGAAAAAACCGGCTTGGGATG CGTTTTTGCTCTATTTAATAGCACTGTTTTTAGTTGTTGGGCGTCTTTGC AACACGTAACATTACGTGGGAGAGAATTACAAGTATTTCGTGTTACAGAC AAAAATACAGTCCTACAAATGTGTTTTTTTCTTTTCTTTTTTTGCAGGGC GCGGAGGGCAGCTTGTGTCTCATCGAAAGGGGGGACGTGGACTCCATCGT CAGGCACGCCGACTTCAGGCTGTTCGCTGAATCCTCCCACCGACGCCACC AAGAAAGCCTTGCCACCGGCACTGCGCCGACGGTCAGTGTTTCAATGTTC AAACACAGCTACAAATGTTGTATCGGAAGTGATATCTTGCGCCGACATCA CGCTATTGTTGCGATTGCCAGACGAAAGCATGATCGCTACGCTAATGCAG TAATGTCAAAATCTCGTGTTACACGTTTCTTGATGTTGGGGAAAACCGTC CTATCTCACTGTCCTTGTTTATGGTGGACATGGTATGGTAGGGTAACTTT TTAGGTGTGGCAAAATGTGGTATTCCTTTGAGCAGTAAGCATTACCCTGT CAATCTCTTGGACATACGGTAAAGGCGCTAGTAATAGCATATTCCATTTT GCCGTTTCATACCTGTACTATACTGTACTTGTTGCGCGCTTACGCTGTTG ACATCGCAGGTTCTATGAGGTGTATGTTCCCGAACTGGTCGATCGTGCGG ACCTTAAGCGCGTTGCTGACGACTACTTATCTGGTGTCTCGGCGGAGCAA GACCACCTGGCATTCACGGCCGTTGACCTTTATCTATGGGCCAGGGGCCT CGCGGCGGAGAGTTTGAGCGATGGTGCCGGACAACGACCACGATATTCCC TCAGGTTCGTTTGTACGTGGAATGTACTTCGTATTGGTTTAGAGTTGTTT GCACCCACGTGTTACAAGTATTACCGTACTCCTGCATACTAAACTTGGCG TCAGGTTGTTGGGCTAGAAATAAGGACCGCACAAGTCTACTTGTACGAGG TACACCTTATTTGAGGCGGACCTCATGTAATACAATCACATCTTGTTGGC TTGGGCTACGCTTTTACGTGAACCTTTGTGTAAACAAAATAGTTTGACGA ATTGAGTTGTACTTAAACTTGTACCTGGTATCGTTTTATAAAATCGTAAA GCGACGACCTGGGAGAGATTGCATCGTTGCAGTAGGTGAGGTTGATAACC ACGCGGAGGCTCTACCCTATGGTGGCGTGGCACGGGCAGAACCCATCTGC TCCGTGTTCAAAGGCCCGAAATGTTCGAATATTTAAAATGTATTTTCTCT TGTTCTGTTTCTATAACAAATGTTGACTCGACACTTCTCCTTGTCTTCTG CTCCATCGTCTGCTAtttagTTTACATCGATGCAGGACCCTTGTTGGAGC TTTGTCCGCCGCTCGGCGTTTGGTCGACCGTGGTTTTAGCCCTCGGAGGG CTATGATTGAAGGCATCCGTGGGGCTTTCGAAATCCAGTTGGACGGGTGA GGTCCCATGTCGGCAATCAGGACTCCACGAACAATTTACGTTCCACGAAC AATTTACGTCATCAAATTATTATCGTGCAAAAAGTGGGTGGTTTGTATCG GATTCTTCCTGTGAGCACTGTTCGCTGCAAAAAAAGAGATGGTCATCACA GTATACAGTACTGTAGTACTGTAGTACCTCGAGTTTTCTGTAGCTGCAGT AAATCCTCAGCAATTGCTAACGCTGAAGCTTCCCCACTACGCTACCCTGT ACCACTCAAAACATCTGTTTCTTAAAACTTATTCCTTTCCCATCCAATTC CTCTTTGTAGGGACGGCCGAGTCAGAATTGTCAAAGGAATACTGAAGGCT TTCGGCGAAGACTTCTCCGCGAAGGACATCGATAAGCCACCAAGGCGACC TGGCGGAAGAGGCGGAGGCAGTGACCCTTGGGTGGTGATTGGACCTTTCT GGCTTGAGGGCGGTCCGTTGGATCCCGTCGATGCTGCGTAGCTGGACGCT TGTACCAAGCAGCGCAGGTAATCTGGGGTCATTTTTTCTTCAAGTTTGAT CTTGGAGTTGCCTTGGTGATGGAGGTACCCATGCGCTGTTTTTGTGACTT ACCGTAAGGATTCATTGGTGCCTGTTTTATTACATGTTTAATTTTTACTT GAGGCCTGATACCGTTTTTGACATACATAATGAATATACAGACCTACTGT CCTGTAGACTTATCTGAGCGCTTCGAGTTGTGGGGAACTTTGAAAAACCA TAACACTACAAGTACGATACTGTAGTCTATAGACTATGTATCACCGACAC TGTCTTCCAATGTATCGCCTTGTTCACCAAGTTGTTGTGCCTCATCATAG TGTGGGTAGATTAAGGCCCGATCTTATGGATCAGAAAAAACGTTATCGAA AAACTTTTTTTTCTGACAAGAAAATTTCTGATGAGAACACCGATGCGACG TGATTTATGGGACAGAAAAAAACATTATCGGAAAATATTGATTCTGACAG TCCTGATGTATTAGGACCTGGGACTATGGTCCTATTTTTTTTTGTGTCGA ATGCTCTTCCGTACTGGTATGTTTGCATGGTACGGTGCGGCCGCGGCCAG CTGTATTCGTGTAGTTGTGTAAGCTCCCCACGATTGAAGATCATGTCCTG TGCCACGCCACGGTTGCAAGTAGCACAAATGTATTTCAAAGCCGATGAAT CTCGGCGACTGCAAGTTGTACTCTACTGGAGATTCTGTTCATAATGTATA ACCTGGTACACAGTCTGCTGTATGTTTTAGATAATGCTGTCACCCACAGC AAAAGTCGCGAAGGACTGCTGCGAGCAAGCTCATTGCCATGCTTGTGCAC CTTACAACCGTTGCGTGGTACAGCAGGTGGTCTTCGATCGTTTCGGACTT ACACAACCACACGAATGAAGCTCTGAGGCCGCAACGTACAATGCAAACAG ATCTGTCTGTGCAATATCTCAGAAGGTCTAGGCGCGTTCTAGTTTTTCTA TAACCATATAATCTGCACCGAGGACGTGACTGCTGTATACGACGCACATT GCAAAGGCTACAGATAGAAAATGTGTTCTCGGGACTCGATTGTATCTTCC ACGTGGAGCAGCCCTAGAACGAGTGCCAACTGATTGATATTTTTTATTCT CTGCTTGCAGCGTCGACATGCTGCCATTGCGACCGTCACCGCTGCGTCAC AGTCACCCATGCCTGTCTCCAACCTACACGAGGTCTGTGTTTGAAGGCAG ATTTGAACTTTTTGCGTCCGTCCGTCCGGCACGCCTTCGCCCACTTCACA TAGCGAAGGACTGCTCCTGCGGATAGGCACATTATATTGTGCACCTACTG TGGCGTGGTACAGTACGTGATCTTTAACCATTTCCTTGCACAACCACACG AACGCAGCTCGAAGGCCGCAACGTGCCATGCAAAGAGTACGACTGTGCAG TACGGCTGTGCAATATGTACTGTACCGAGTACGTCAACTGCTGCACGACG CACGTTGCAAAAACTAGAGATTTGTTCTCGGGACACGATTGTATCTTCCT CGGCGAGCAACCCTAGAACGAGTGCCAACTGATTGATATTTTTGATTCTT AGCTTGCGGTGTGGATATTCTGCCCCCGAGGTCGTCACCGCCGCAACACA GTCATCCATGCCTCTGTCTCCAAGACACACGAGGTCTGTGTTTAAAGGCA TATATTAGAACTTTTGCGTCCATCCGTCTGAGAGACGCCTTCGTATCGCT ACTAACTATTTTTCTGATAACTTTTTTTCTAATAACATCTTCCTCCGTTT TTTCCGGATTTTTCGATAACGTTTCCTCCGAAAGCGCTTCCTCCGAAAAA AAGTGATCCGAAAACACGTTTTTCTGATCCATAAGATCGACTTTGTGGTC GTTATCAGTTTGTTTGTTTTTTCGATAACGTTTTTTCTGATCCATAAGAT CGGGCCTAACTATAATATACTGCCTGTAATATATTGACGCCTCTTGTGGT CGTTATCCCAAGCAGGTTTGTTTTAACGGCGTCCGTTCACCGAACCCTCC GCTGCCTCGTGAGAGCGGCAGCGTCGTCCGATTCCCACGTTCTACTGCAA GGTCCCACCAGGTAAGGAAATAGGGTTAGGGTTTGTGTGTGCTGTATTGT ACATTATTCTGGATGTCGACCTGTCCTGAGATGCGGTATGTACGACGCTC ACGGCGAGGTTTTTCTAATGCCTTCCGTGTTTTTGTAGTTTAAGGAAGTC TTGGGTTTCGGTGTTGCGCGCCAATCGTAATAATAGTAATAGTAATAACT GTAGAGTACGTAAAAAGCTGAGAAATATCATTAGACCCCTCCCCCGGGCT GGAGAGGTATTAATATTATGAATCCGAGCGTTTTGGGGTAAACATTAATT TGCTCATGGCGGTTGTTCGAATAGTTCTCGCTATATTTTTCTTCCGTTAT TGTAATTTAGATGTTTTTTGCAGGCGTCGAGATGGGACTATCAATATTTC AAAATCGAGATGCGTGATGGCGGCAATGATGAAACACGTTATGTCGCAGT TTACTATGAGCGAGACTAACGACTATGCCAGTTATCCCTCTGAGCCGTTT GCATCTTTGATGTCCAATCTTTGAGCGTAGCCCTCATCGAAAATTCATTC GTTTCCAGTGTAATAAATTTGTACAAATGTTAGGGTTTAGGCCAACCTTT ATGGGAAACGAAAAAACAGAAAAGCAAACTACAGAAAATTGTAAATTCTG TCGCCAAAAAAAACGTGGGGAAAAACTGTAGTTGGTCGTTTATGGGATAA AGGAAAAATACAAAAAAGAACGGGGAGCATATCGGATTAACCCCGGCATT TTCGGCCACCCATCACCGCACAAAGATAGGTGCAAGTATTTACACATAGC GAGTATGGAGCAACCGGGTAAGGTTGCCAGCCCTGCTCGTAGTCAACTGA ACAGGGAAAATTAATATTTCCCTCTCCGCGTTTGTGCCCGAGAATTTGGT CCGGCGAGACAGGGTCGTTTAGTACTTAAATTGCGAGTACATCGCAAATA GAGTGGGCAGAGCGACATCGTTTCGATGGCGAGCCGTCGGACGCTCGTAC GCGCAGTCCGTCCCTGCTCGATTGATCTCCGGCGCCACCCATTCAACCAC CCGCCGCCGGCGATCAGCTTGTCCGGGCCCATCACCTCAACAGCTTTCAT AAATTTCCTCCAAATATGCTTGCCCGGGCCCATCACCTCAACCGATTCTA TAAATTTCCTCCAAATCTGCTGCTCCGGCGATCATCGCACAACTGCTGCT CGGCTGAAAAAGCGGGTTATCAAAAAGGGAAAGTAGGTTTTGTCACTTAT TATTGAAGGTATTAACATTAAAATTAAACCTATTAAATCTGGAGAAGATG GGGAAATTAAAAGAATGGAACAAGTTCAAAGCTTTTATAATGAATACTTT TTATGATAACTAATAGTGAAATTAAAGTAAAAAATTTAAAGGTTTTATAT AAAACTTTAATATTTAAAAATTTAATTCCCATCGTACAACAGCACTCGCG AGCTCTTCTTTGCCGATATTTGATAGGAGGGATGCTACAGTCCCGACCTC CCAATCGTTCTTGGAAGGCGTGAATCATTTCTGTGGCGAAATAAACTTGT CGAGCCACCTACAGAAATGAGCTTCATTTCTGTAGGTGGGCAGAGAAAAA TAGCCTCCCACAGAAATTCGCAATTTCTGTAGGGCGAAATTTCTGTGGCA CGGGGCCCATAGTGCGACGTTTACAAAAATTTCGCCACAGAAATTTCACT TTTCTGTATTTCACTGTCGTTTCTGTTTCCCATAAAGGTTGGCCTTACTT TAGGTGGTCCCTGGTCAATCCTCTTACCCTTGATGTGCACGAATTCTGTA AAGCGGGCAAAACGGTTGCTGTGCGTCCCTGAAGTCAAAATATGTTGACA CTGTCGTATCAATTTTAATATTCCATTACCAGTATGCTTTTCCATTACCA GTACCAGTATGCTTTTCGTATTCCATTACCAGTATGTTGTCCGTATTCCA TTACCAGTATGCTTTTTGCTATGCTTTTTTCCTCATTTGCCATGGGTTTA CATGTTACCACGTGTGATAATCGGTTAACAATAAGGGGGGGGGTTCACTA TTCCGCTCCGGGGATGTTACCAGAACAGCCCACCAGAGGAAATAACAACA TAACAACATGATCCCCTACGTGGTTGACAACGTTTCTCGGAATCGAATTC CTTCCGCGAAGTGGGTTGTCCGGAATGTCCCCGAGAGAAAAGGCTTACTT GTCGCCCCCTCCCCAATTGGGGAAAATTGCATCATCTCATCTCTACCTCA TTCGTCCCTTGACCCCCTCCAGTGCGGGCAAGACAAGCATCGTGGAATAT CTCTCAGCCCGCCTGGGCCACCGCTGCGTTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig92:215201..223381+

>mRNA_F-serratus_M_contig92.20587.1 ID=mRNA_F-serratus_M_contig92.20587.1|Name=mRNA_F-serratus_M_contig92.20587.1|organism=Fucus serratus male|type=CDS|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig92:215201..223381+ (Fucus serratus male)
AGTGGCTCGTCAAGCCCTTCCGGACAACGTCGAGAATGGGAGCGATTCAA
CCAGAACGCGGAGCGATTCGAACGTCAAAGAGTGGCTCGTCAAGCCCTTC
CGGACAACGTCGAGAATGGGAGCGATTCAACCAGAACGCGGAGCGATTCG
AACGTCAAAGGGCGCGGAGGGCAGCTTGTGTCTCATCGAAAGGGGGGACG
TGGACTCCATCGTCAGGCACGCCGACTTCAGGCTGTTCGCTGAATCCTCC
CACCGACGCCACCAAGAAAGCCTTGCCACCGGCACTGCGCCGACGGGCGC
GGAGGGCAGCTTGTGTCTCATCGAAAGGGGGGACGTGGACTCCATCGTCA
GGCACGCCGACTTCAGGCTGTTCGCTGAATCCTCCCACCGACGCCACCAA
GAAAGCCTTGCCACCGGCACTGCGCCGACGGTTCTATGAGGTGTATGTTC
CCGAACTGGTCGATCGTGCGGACCTTAAGCGCGTTGCTGACGACTACTTA
TCTGGTGTCTCGGCGGAGCAAGACCACCTGGCATTCACGGCCGTTGACCT
TTATCTATGGGCCAGGGGCCTCGCGGCGGAGAGTTTGAGCGATGGTGCCG
GACAACGACCACGATATTCCCTCAGGTTCTATGAGGTGTATGTTCCCGAA
CTGGTCGATCGTGCGGACCTTAAGCGCGTTGCTGACGACTACTTATCTGG
TGTCTCGGCGGAGCAAGACCACCTGGCATTCACGGCCGTTGACCTTTATC
TATGGGCCAGGGGCCTCGCGGCGGAGAGTTTGAGCGATGGTGCCGGACAA
CGACCACGATATTCCCTCAGGACCCTTGTTGGAGCTTTGTCCGCCGCTCG
GCGTTTGGTCGACCGTGGTTTTAGCCCTCGGAGGGCTATGATTGAAGGCA
TCCGTGGGGCTTTCGAAATCCAGTTGGACGGGTGAGACCCTTGTTGGAGC
TTTGTCCGCCGCTCGGCGTTTGGTCGACCGTGGTTTTAGCCCTCGGAGGG
CTATGATTGAAGGCATCCGTGGGGCTTTCGAAATCCAGTTGGACGGGTGA
back to top