mRNA_F-serratus_M_contig9.20380.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20380.1
Unique NamemRNA_F-serratus_M_contig9.20380.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.230e-18
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 VKAEWTEYIAMKNKLDEIPFDEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVP--NHVPKIPMKDAFKHLPAR 331
            V  E   Y ++  K DE+   EVL WW  TG   F  L+ VA+ ++G+ A V+ +ERDFS VG +L+P RSR+D  +VEIVM+LN N   +P    +P +  K+    LPAR
Sbjct:  170 VAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPAR 281          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A2V3IDA5_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDA5_9FLOR)

HSP 1 Score: 84.0 bits (206), Expect = 6.570e-16
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    2 VKAEWTEYIAMKNKLD-EIPFDEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARL 334
            V+AE   Y+  +  L  ++    +L WW   GSK +  LS VAR++ GHP + A I+RDF   G  LS RR+R D+ +V+++++L+ NLDL+P+ VP++   +    +PARL
Sbjct:  221 VRAEINSYLDHERALPGDVTSRNLLNWWRTKGSK-YPSLSVVARAVLGHPVSSARIDRDFGTAGSFLSSRRTRHDSAFVDMLLFLHCNLDLIPSDVPEMSNPEWKSQIPARL 331          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.620e-14
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   14 WTE--YIAMKNKLDEIPFDEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVP 289
            W+E  Y   K  +DE+  D VL WW    S  +  L+  AR ++G PA+ A +E DF   G++++  RS  DA YVE++++L+ NLDL+P  +P
Sbjct:   17 WSEQSYALQKRTIDELSCDSVLKWWKRWMSS-YPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIP 109          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.490e-13
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   62 DEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARL 334
            ++VL WW    +  +  L+ VAR ++G PA+ A +ERDFS  G+M++  RS +D+ YVE++M+L+ NLDL+P  + K+    A   +P RL
Sbjct:  605 EDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRL 694          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.790e-12
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 2
Query:   47 DEIPFDEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARLT 337
            D++  + VL WW   G + +  L+  AR ++G PA+ A +ERDF+    M++  RS  DA YVE+V++L+ NLDL+P  +P++  +D    +P RL+
Sbjct:  540 DDLSCEGVLEWWKKWG-RLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLS 635          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.340e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    2 VKAEWTEYIAMKNKLDEIPFDEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNH--VPKIPMKDAFKHLPAR 331
            V  E   Y  +  K  ++P  +VL +W   G + F  L +VA+  +G  A+ A IERDFS  G   +  RSR +  ++E+VM L  N +L+P++  +P I  KD  K LPA+
Sbjct:  470 VSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAK 581          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.050e-10
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   92 GSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDA-VYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARLTEIDDLDDSIVPSLTETGGQPDTVYLNGSEAEE 433
            G+  +  L+ VAR ++G PA+ AA+ERDFS  G+M++  RS +D+  YVE++++L+ NLDL+P  +  +    A    P RL        + V  L +  G    V L   EA +
Sbjct:    2 GTHAYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTLTEAVARTMFPGRLA-------NPVEGLKQLDGAFTPVDLTDEEASD 109          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.050e-10
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  113 LSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAV-YVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARLTE----IDDLDDSIVP 370
            L+ VAR ++G PA+ A +ERDFS  G+M++  R  +D+  YVE++++L+ NLDL+P  + K+    A   +P RL      ++ LD +  P
Sbjct:    9 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVEGLEQLDGAFAP 99          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.580e-10
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   62 DEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARLTE----IDDLDDSIVP 370
            ++VL WW    +  +  L+ VAR + G  A+ A +E DFS  G+M++  RS +D+ YVE++++L+ NLDL+P  + K+    A   +P RL      ++ LD +  P
Sbjct:  378 EDVLKWW-KMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRLANPVEGLEQLDGAFAP 483          
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.110e-10
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:   62 DEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFSLVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPARLTE----IDDLDDSIVP 370
            ++VL WW    +  +  L+ VAR ++G PA+ A +E  FS  G+M +  RS +D+ YVE++M+L+ NL+L+P  + K+    A    P RL      ++ LD +  P
Sbjct:  141 EDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVVARTKFPGRLANPVDGLEPLDGAFAP 246          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JZQ5_9PHAE4.230e-1842.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2V3IDA5_9FLOR6.570e-1639.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
A0A6H5L5L6_9PHAE4.620e-1439.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE4.490e-1340.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI2.790e-1238.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE4.340e-1136.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW12_9PHAE1.050e-1034.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.050e-1037.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE2.580e-1034.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE5.110e-1034.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:1392547..1393305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20380.1prot_F-serratus_M_contig9.20380.1Fucus serratus malepolypeptideF-serratus_M_contig9 1392578..1393214 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932620.6662579-UTR-F-serratus_M_contig9:1392546..13925771622932620.6662579-UTR-F-serratus_M_contig9:1392546..1392577Fucus serratus maleUTRF-serratus_M_contig9 1392547..1392577 +
1690964389.6457496-UTR-F-serratus_M_contig9:1392546..13925771690964389.6457496-UTR-F-serratus_M_contig9:1392546..1392577Fucus serratus maleUTRF-serratus_M_contig9 1392547..1392577 +
1622932620.7238593-UTR-F-serratus_M_contig9:1393214..13933051622932620.7238593-UTR-F-serratus_M_contig9:1393214..1393305Fucus serratus maleUTRF-serratus_M_contig9 1393215..1393305 +
1690964389.678019-UTR-F-serratus_M_contig9:1393214..13933051690964389.678019-UTR-F-serratus_M_contig9:1393214..1393305Fucus serratus maleUTRF-serratus_M_contig9 1393215..1393305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932620.6876504-CDS-F-serratus_M_contig9:1392577..13925981622932620.6876504-CDS-F-serratus_M_contig9:1392577..1392598Fucus serratus maleCDSF-serratus_M_contig9 1392578..1392598 +
1690964389.6567686-CDS-F-serratus_M_contig9:1392577..13925981690964389.6567686-CDS-F-serratus_M_contig9:1392577..1392598Fucus serratus maleCDSF-serratus_M_contig9 1392578..1392598 +
1622932620.711106-CDS-F-serratus_M_contig9:1392821..13932141622932620.711106-CDS-F-serratus_M_contig9:1392821..1393214Fucus serratus maleCDSF-serratus_M_contig9 1392822..1393214 +
1690964389.6673875-CDS-F-serratus_M_contig9:1392821..13932141690964389.6673875-CDS-F-serratus_M_contig9:1392821..1393214Fucus serratus maleCDSF-serratus_M_contig9 1392822..1393214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20380.1

>prot_F-serratus_M_contig9.20380.1 ID=prot_F-serratus_M_contig9.20380.1|Name=mRNA_F-serratus_M_contig9.20380.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MKNKLDEIPFDEVLLWWANTGSKKFRWLSHVARSIYGHPATVAAIERDFS
LVGQMLSPRRSRLDAVYVEIVMYLNLNLDLVPNHVPKIPMKDAFKHLPAR
LTEIDDLDDSIVPSLTETGGQPDTVYLNGSEAEETGE*
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mRNA from alignment at F-serratus_M_contig9:1392547..1393305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20380.1 ID=mRNA_F-serratus_M_contig9.20380.1|Name=mRNA_F-serratus_M_contig9.20380.1|organism=Fucus serratus male|type=mRNA|length=759bp|location=Sequence derived from alignment at F-serratus_M_contig9:1392547..1393305+ (Fucus serratus male)
CGTGAAGGCGGAGTGGACCGAGTACATTGCAATGAAAAATAAGCTCGACG AGGTGTAACTTTTTTGCTTCTGTACCATTCGAATTTTTGTCTATTTTTCA CGCTAATTTTTCTTCTTCTTTTTGTAGTTGGTGTAGGTCTCTTGCCACAC CCGGACGGTTTTGAGGTCTCTTCTGAGCGCTATAGTCTTGTGGTGATATT GCGGCCGAACAGTTACGGTGTTGATGTGACTACCTGCCTTGCCCCCGCGC TCGCTGACCCCTGCCGCGAACAAAGATTCCCTTCGACGAGGTGCTGCTGT GGTGGGCCAACACTGGCTCCAAGAAATTCCGCTGGCTCTCGCACGTCGCA AGGTCCATCTACGGGCACCCCGCGACCGTGGCAGCTATTGAGCGGGACTT TAGCTTGGTTGGCCAAATGCTCTCTCCACGCCGCTCTAGGCTGGACGCTG TGTATGTCGAGATTGTGATGTACCTGAACCTCAACTTGGACCTCGTCCCT AACCACGTCCCTAAAATCCCCATGAAGGACGCCTTTAAGCATCTGCCTGC GCGACTTACGGAAATCGACGACCTCGACGATTCCATTGTCCCGTCACTCA CTGAAACAGGGGGGCAGCCAGACACGGTATACTTAAACGGCTCGGAGGCA GAAGAGACTGGCGAATAGTTTGCAGACGCGTCTTGGCACCTCCACATGTC CGGACTCAGAGAGCCGCTAACGTGTACTCTAGCGAAATTTCCCGCTCCAT GTTGTAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:1392547..1393305+

>mRNA_F-serratus_M_contig9.20380.1 ID=mRNA_F-serratus_M_contig9.20380.1|Name=mRNA_F-serratus_M_contig9.20380.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig9:1392547..1393305+ (Fucus serratus male)
ATGAAAAATAAGCTCGACGAGATGAAAAATAAGCTCGACGAGATTCCCTT
CGACGAGGTGCTGCTGTGGTGGGCCAACACTGGCTCCAAGAAATTCCGCT
GGCTCTCGCACGTCGCAAGGTCCATCTACGGGCACCCCGCGACCGTGGCA
GCTATTGAGCGGGACTTTAGCTTGGTTGGCCAAATGCTCTCTCCACGCCG
CTCTAGGCTGGACGCTGTGTATGTCGAGATTGTGATGTACCTGAACCTCA
ACTTGGACCTCGTCCCTAACCACGTCCCTAAAATCCCCATGAAGGACGCC
TTTAAGCATCTGCCTGCGCGACTTACGGAAATCGACGACCTCGACGATTC
CATTGTCCCGTCACTCACTGAAACAGGGGGGCAGCCAGACACGGTATACT
TAAACGGCTCGGAGGCAGAAGAGACTGGCGAATAGATTCCCTTCGACGAG
GTGCTGCTGTGGTGGGCCAACACTGGCTCCAAGAAATTCCGCTGGCTCTC
GCACGTCGCAAGGTCCATCTACGGGCACCCCGCGACCGTGGCAGCTATTG
AGCGGGACTTTAGCTTGGTTGGCCAAATGCTCTCTCCACGCCGCTCTAGG
CTGGACGCTGTGTATGTCGAGATTGTGATGTACCTGAACCTCAACTTGGA
CCTCGTCCCTAACCACGTCCCTAAAATCCCCATGAAGGACGCCTTTAAGC
ATCTGCCTGCGCGACTTACGGAAATCGACGACCTCGACGATTCCATTGTC
CCGTCACTCACTGAAACAGGGGGGCAGCCAGACACGGTATACTTAAACGG
CTCGGAGGCAGAAGAGACTGGCGAATAG
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