mRNA_F-serratus_M_contig895.20304.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig895.20304.1
Unique NamemRNA_F-serratus_M_contig895.20304.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: D8LDX4_ECTSI (Fumarate hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX4_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.210e-80
Identity = 133/156 (85.26%), Postives = 142/156 (91.03%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMV         ANLLSSMRLLGD C+SFA+RCVSG  ANR+RIQ+IMS+SLMLVTALNPKIGYDNASK VAKKAHK+GTTLK+AAL LELLTEEEFD+WVRPE+MIGPK
Sbjct:  335 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMV---------ANLLSSMRLLGDSCSSFAERCVSGTVANRDRIQEIMSTSLMLVTALNPKIGYDNASK-VAKKAHKEGTTLKEAALALELLTEEEFDEWVRPENMIGPK 480          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A2H0QXN8_9PROT (Fumarate hydratase class II n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_39_49 TaxID=1973900 RepID=A0A2H0QXN8_9PROT)

HSP 1 Score: 228 bits (580), Expect = 3.830e-70
Identity = 113/157 (71.97%), Postives = 131/157 (83.44%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPKD 473
            SSIMPGKVNPTQCEA+TM+C QVMGNH+A+T+ GSNGHFELNVFKPVM+          NLL S+RLL DGC SF D CV GI+ANR RI+ +   SLMLVTALNP IGYDNA+K +AKKAHK+GTTLK+AA+ LELLTEE+F+QWVRPE+MIGPKD
Sbjct:  323 SSIMPGKVNPTQCEAMTMLCTQVMGNHMAITIAGSNGHFELNVFKPVMIH---------NLLQSIRLLADGCVSFTDNCVVGIKANRGRIESLRDESLMLVTALNPHIGYDNATK-IAKKAHKEGTTLKEAAIALELLTEEQFNQWVRPENMIGPKD 469          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A2D4BP08_PYTIN (Fumarate hydratase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BP08_PYTIN)

HSP 1 Score: 225 bits (573), Expect = 4.940e-69
Identity = 117/156 (75.00%), Postives = 131/156 (83.97%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEA+TMVCAQVMGNHVAV+VGGSNGHFELNVFKPVM+         +NLLSS+RLLGD   +F D CV GIEANR+ I  +M +SLMLVTALNP IGYDNA+K VAKKAHKDGTTL++A +EL LLT EEFD+ VRPEDMIGPK
Sbjct:  330 SSIMPGKVNPTQCEAITMVCAQVMGNHVAVSVGGSNGHFELNVFKPVMI---------SNLLSSIRLLGDSAVAFTDNCVVGIEANRDTIDKLMKNSLMLVTALNPHIGYDNAAK-VAKKAHKDGTTLREAVVELGLLTGEEFDRLVRPEDMIGPK 475          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: T0RV02_SAPDV (Fumarate hydratase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0RV02_SAPDV)

HSP 1 Score: 225 bits (573), Expect = 6.150e-69
Identity = 116/156 (74.36%), Postives = 132/156 (84.62%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEA+TMVCAQV+GNHVAVTVGGSNGHFELNVFKPVM+         +NL+SS+RL+GD CA+F D CV GIEAN + I  +M +SLMLVTALN  IGYDNASK VAKKAHK+GTTLK+A +EL LLT EEFD++VRPEDMIGPK
Sbjct:  339 SSIMPGKVNPTQCEAITMVCAQVIGNHVAVTVGGSNGHFELNVFKPVMI---------SNLISSVRLIGDSCAAFTDNCVVGIEANLDTIDRLMKNSLMLVTALNSHIGYDNASK-VAKKAHKEGTTLKEAVVELGLLTAEEFDRYVRPEDMIGPK 484          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A7S3XU16_HETAK (Fumarate hydratase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU16_HETAK)

HSP 1 Score: 220 bits (561), Expect = 6.630e-69
Identity = 112/156 (71.79%), Postives = 130/156 (83.33%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGK+NPTQCEALTMV AQVMGNHVA+TVGGSNGHFELNVFKPVM+         ANLLSS++L+GD C SF+  CV GI+AN E+I ++MS+SLMLVTALNPKIGYDNA+K VAK AH++GTTLK+AA  +  LT EEFDQWV P DM+GPK
Sbjct:  171 SSIMPGKINPTQCEALTMVAAQVMGNHVAITVGGSNGHFELNVFKPVMI---------ANLLSSIQLIGDACRSFSRNCVVGIQANTEKINELMSNSLMLVTALNPKIGYDNAAK-VAKHAHQNGTTLKEAATSMGFLTPEEFDQWVVPADMVGPK 316          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A482UH69_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UH69_9ARCH)

HSP 1 Score: 215 bits (548), Expect = 1.990e-68
Identity = 110/156 (70.51%), Postives = 125/156 (80.13%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEALTMVCAQVMGNHVA+TVGGSNGHFELNVFKPVMV         +N L S RL+GD C SF + CVSGIEAN +RI +++  SLMLVTALNP IGYD A+   AKKAHK+GTTLK+AA+ L  LT  +FD WV+PE+MIGPK
Sbjct:   64 SSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPVMV---------SNFLQSARLIGDACVSFTEHCVSGIEANHKRINELLFDSLMLVTALNPYIGYDKAAA-TAKKAHKEGTTLKEAAIALGHLTSAQFDAWVKPENMIGPK 209          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A6G0YCJ3_APHCR (Fumarate hydratase n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0YCJ3_APHCR)

HSP 1 Score: 220 bits (560), Expect = 3.010e-68
Identity = 111/156 (71.15%), Postives = 129/156 (82.69%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEA+TMVCAQVMGNHVAVTVGGSNGHFELNVFKP++V         +N+L S RLL D C SF D CV GIEAN+ERI  ++ +SLMLVTALNP IGYD A+K +AK AHK+G+TL++ AL+L  LTEEEFD+WVRPEDM+GPK
Sbjct:  227 SSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGGSNGHFELNVFKPMIV---------SNVLRSTRLLADSCMSFTDNCVVGIEANKERISHLLQNSLMLVTALNPHIGYDKAAK-IAKTAHKNGSTLRETALQLGYLTEEEFDKWVRPEDMLGPK 372          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A8C4WXV6_EPTBU (Fumarate hydratase, mitochondrial n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WXV6_EPTBU)

HSP 1 Score: 222 bits (565), Expect = 1.510e-67
Identity = 112/156 (71.79%), Postives = 130/156 (83.33%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEALTMV AQVMGN+VA T G S+GHFELNVFKP++VR         N+L S+RLLGD C SFAD C+SG++AN ERI  +MS+SLMLVTALNP IGYD A+K +AKKAHKDGTTLK+AALEL  LT E+FDQWV+P+DM+GPK
Sbjct:  358 SSIMPGKVNPTQCEALTMVAAQVMGNNVATTFGASSGHFELNVFKPMIVR---------NVLQSVRLLGDSCCSFADHCISGMQANHERINQLMSNSLMLVTALNPHIGYDKAAK-IAKKAHKDGTTLKEAALELGFLTSEQFDQWVKPQDMLGPK 503          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A024GCI2_9STRA (Fumarate hydratase n=2 Tax=Albugo TaxID=65356 RepID=A0A024GCI2_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.710e-67
Identity = 114/156 (73.08%), Postives = 131/156 (83.97%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEA+TMVCAQVMGNHVAVTVGGSNGHFELNVFKPVM+         +NLLSS+RL+GD   +F D CV+GI AN++ I  +M +SLMLVTALNP IGYDN+SK VAKKAH+DGTTLK+AA+EL  LT EEFD+ VRP+DMIGPK
Sbjct:  320 SSIMPGKVNPTQCEAITMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMI---------SNLLSSIRLIGDSAIAFTDNCVTGIIANKDTIDRLMKNSLMLVTALNPHIGYDNSSK-VAKKAHQDGTTLKEAAIELGFLTGEEFDRLVRPQDMIGPK 465          
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Match: A0A7K8EML2_LEURO (Fumarate hydratase, mitochondrial (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K8EML2_LEURO)

HSP 1 Score: 214 bits (546), Expect = 1.810e-67
Identity = 107/156 (68.59%), Postives = 129/156 (82.69%), Query Frame = 3
Query:    3 SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYHRSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTALNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMIGPK 470
            SSIMPGKVNPTQCEA+TMV AQVMGNHVAVTVGGSNGHFELNVFKP+M++         N+L+S RLLGD C SF D CV GI+AN +RI  +M+ SLMLVTALNP IGYD A+K +AK AHK+GTTLK+AA++L  LT ++FDQWV+P+DM+GP+
Sbjct:  122 SSIMPGKVNPTQCEAVTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIK---------NVLNSARLLGDVCVSFTDNCVVGIQANTDRINKLMNESLMLVTALNPHIGYDKAAK-IAKTAHKEGTTLKEAAIKLGFLTSDQFDQWVKPKDMLGPQ 267          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig895.20304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX4_ECTSI1.210e-8085.26Fumarate hydratase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A2H0QXN8_9PROT3.830e-7071.97Fumarate hydratase class II n=1 Tax=Alphaproteobac... [more]
A0A2D4BP08_PYTIN4.940e-6975.00Fumarate hydratase n=2 Tax=Pythium TaxID=4797 RepI... [more]
T0RV02_SAPDV6.150e-6974.36Fumarate hydratase n=2 Tax=Saprolegniaceae TaxID=4... [more]
A0A7S3XU16_HETAK6.630e-6971.79Fumarate hydratase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A482UH69_9ARCH1.990e-6870.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0YCJ3_APHCR3.010e-6871.15Fumarate hydratase n=1 Tax=Aphis craccivora TaxID=... [more]
A0A8C4WXV6_EPTBU1.510e-6771.79Fumarate hydratase, mitochondrial n=1 Tax=Eptatret... [more]
A0A024GCI2_9STRA1.710e-6773.08Fumarate hydratase n=2 Tax=Albugo TaxID=65356 RepI... [more]
A0A7K8EML2_LEURO1.810e-6768.59Fumarate hydratase, mitochondrial (Fragment) n=2 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig895contigF-serratus_M_contig895:10760..12993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.9
Seed ortholog evalue1.9e-64
Seed eggNOG ortholog2880.D8LDX4
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
Hectar predicted targeting categoryother localisation
EggNOG free text desc.fumarate hydratase activity
EggNOG OGsCOG0114@1,KOG1317@2759
EC4.2.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size479
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig895.20304.1prot_F-serratus_M_contig895.20304.1Fucus serratus malepolypeptideF-serratus_M_contig895 10760..12982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932602.197088-CDS-F-serratus_M_contig895:10759..108911622932602.197088-CDS-F-serratus_M_contig895:10759..10891Fucus serratus maleCDSF-serratus_M_contig895 10760..10891 -
1690964381.3246856-CDS-F-serratus_M_contig895:10759..108911690964381.3246856-CDS-F-serratus_M_contig895:10759..10891Fucus serratus maleCDSF-serratus_M_contig895 10760..10891 -
1622932602.2241244-CDS-F-serratus_M_contig895:11641..117261622932602.2241244-CDS-F-serratus_M_contig895:11641..11726Fucus serratus maleCDSF-serratus_M_contig895 11642..11726 -
1690964381.3402884-CDS-F-serratus_M_contig895:11641..117261690964381.3402884-CDS-F-serratus_M_contig895:11641..11726Fucus serratus maleCDSF-serratus_M_contig895 11642..11726 -
1622932602.2462754-CDS-F-serratus_M_contig895:12164..122541622932602.2462754-CDS-F-serratus_M_contig895:12164..12254Fucus serratus maleCDSF-serratus_M_contig895 12165..12254 -
1690964381.3517778-CDS-F-serratus_M_contig895:12164..122541690964381.3517778-CDS-F-serratus_M_contig895:12164..12254Fucus serratus maleCDSF-serratus_M_contig895 12165..12254 -
1622932602.3210971-CDS-F-serratus_M_contig895:12546..126501622932602.3210971-CDS-F-serratus_M_contig895:12546..12650Fucus serratus maleCDSF-serratus_M_contig895 12547..12650 -
1690964381.362037-CDS-F-serratus_M_contig895:12546..126501690964381.362037-CDS-F-serratus_M_contig895:12546..12650Fucus serratus maleCDSF-serratus_M_contig895 12547..12650 -
1622932602.3341842-CDS-F-serratus_M_contig895:12925..129821622932602.3341842-CDS-F-serratus_M_contig895:12925..12982Fucus serratus maleCDSF-serratus_M_contig895 12926..12982 -
1690964381.3748047-CDS-F-serratus_M_contig895:12925..129821690964381.3748047-CDS-F-serratus_M_contig895:12925..12982Fucus serratus maleCDSF-serratus_M_contig895 12926..12982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932602.3531344-UTR-F-serratus_M_contig895:12982..129931622932602.3531344-UTR-F-serratus_M_contig895:12982..12993Fucus serratus maleUTRF-serratus_M_contig895 12983..12993 -
1690964381.3863754-UTR-F-serratus_M_contig895:12982..129931690964381.3863754-UTR-F-serratus_M_contig895:12982..12993Fucus serratus maleUTRF-serratus_M_contig895 12983..12993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig895.20304.1

>prot_F-serratus_M_contig895.20304.1 ID=prot_F-serratus_M_contig895.20304.1|Name=mRNA_F-serratus_M_contig895.20304.1|organism=Fucus serratus male|type=polypeptide|length=156bp
MPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVRLYH
RSNTRANLLSSMRLLGDGCASFADRCVSGIEANRERIQDIMSSSLMLVTA
LNPKIGYDNASKKVAKKAHKDGTTLKQAALELELLTEEEFDQWVRPEDMI
GPKDS*
back to top

mRNA from alignment at F-serratus_M_contig895:10760..12993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig895.20304.1 ID=mRNA_F-serratus_M_contig895.20304.1|Name=mRNA_F-serratus_M_contig895.20304.1|organism=Fucus serratus male|type=mRNA|length=2234bp|location=Sequence derived from alignment at F-serratus_M_contig895:10760..12993- (Fucus serratus male)
GTTCGTCCATCATGCCTGGCAAAGTTAACCCCACCCAGTGCGAAGCGCTC ACGATGGTGTGCGCACAGGTGAGGGGATATTAGGGAGAGCGAGGTCGTCG CGCGTTCTCCTCATCTGCCTATATTAACTCTAAAGTATTTATTTATTTTA GATTCTGTGTTTCATTTTTGTCCTTCTCCTTAATGTTTGGGGGGGTCTGG CCAGTCGGCATACGATGGACAAATGTTTGAGATCGAGGGAAACGCGGACC ACACCTCTAGAAAACCCGTGTCGACCCAAAAGTGCCTCAAACAACAATGC GCAAGCTTGGCGATTACCGTTTTTTCGTGGTGACACTGGTCAGGTGATGG GGAACCACGTGGCGGTCACTGTTGGGGGCTCCAACGGACACTTCGAGCTG AACGTCTTCAAGCCAGTCATGGTGAGATTATACCACCGATCGAACACGTT GTTGAAGTTTCTTCGAGCAAGAGCGCCAGCAGAGATTGAATGTATACAGA ATACACTATCCAGCATACATTATGTTGGCCTCATGGTATGATTACCGCGC CTGGTGTGGCCCTTCTTCTGAGACCTAACCGGCGCAAGCATGCTGCAGTC GAAGCAGCTATCAAGCGACAGGCCTCGAACAAATGAAACGCGCCCCTGTG AGGAGCGTGATGGCCCTTTTTCCCACGTTCTCGCCCATTCGCTCACGCTC ACCCCCGCCGACCGCCCCATTTATATTTCTTTCTCCCAGGCGGGCCAACC TTCTGTCGTCCATGCGTCTGCTGGGGGACGGCTGCGCATCATTTGCTGAC CGATGCGTTTCGGGAATCGAGGCGAACCGGTAAAAAAAGCAATAAAATAT GCACCACGGTAGAGTACAGTGCAAGTACAAGAGTCTTACCCAATACAGGG ACATGCTCACGCACGATCGAACGTCGACACACACACAAAACACACGAGCT CACACAAAACGGTTTGTGCCGTTTCACAATTTCCGTACGACGTAGTAGGC GTTTCCTGGTTTTGAAACGGTTTTCTCGGTACACCTGCACAAGTACATAC TGTATTTAGCTAAATATCTCATCTCGGGCGTTTTTGCTCCAAATTCGCCC CGTGTGCTTTCGCGCGTTTTGACGGAAATTTGGGGTGGGAATCTGAATAC TTGGGTGAAGCGTAAGTTTGTACTGTTGCAACTTTTTTAATATATATATA TATACCATTGATTTTGGGCACTGTTTCATCCGGTTTAACCCGACCTGACA TTCCGCCCCGGCTTCAGAGAACGCATTCAAGATATCATGTCGAGTTCGCT CATGCTGGTGACGGCGTTGAACCCCAAGATTGGCTACGATAATGCTTCCA AGGTGGGGAAAAGTCCCTTTATCTTCCGCGAAAGGAAGGGATTGACAACG ACTGTTAATTAAGGGGTTGGTTGGACTTTCCTCCCTCCTTCCAGGTGGCA TTGCCGCTAGGCACTCACCACGTGTAAAACTAACTAGCCCGAATGGAAAC GTTTAGGTTTGATAGCGCTTTCGAACGGGGGAAAACATCGACGATTCTCG TTAGCCCCGCTCTAAAATCTGGTTTTCAACGAGCATAGGAGCCTATCAAT TAAGGAAACTGCCTCGATGACCAAAATTTAGAATGCGGAGCTCTCAACGG GGAAAAAATATCTAGGATTCTCGCTATAACCTCGCCCCAAATTTGGTTTT AAACGAGCAGCAATTGCCTATTATAGTAAAAAAAGGAACTGCCTCGATGA CCAAAAATTAGAATGTTGCTTCTTTTACCGTTTTGATTCTCTTTTTTGAA AGGTGCCTCGATCATCTTCTCACCTTTTTTGCTTGCCATTGATAACCGCA CACGTTCGATTTTTTGGTACGGAGGCGTTTTTCCCCTCCCCCGTCCACGG GTTCTAGGCTCTCGCTCATGGGCAGACGTGTTTGTTTCCAAAGCGACGTG TGTGCCAGCTCCCGACAAGATAATGACACGCGGGCGAGAAGAGACCGCAG CGATGCCACACACCGCCGTTTTTTTTTTGTGCTTCCATGTTTTAATGGTC GACGCTCGGCAACTCCTCCCCCCCAACCCCAACCCCTTGTTTTCCCGGCG AGAAGGTTGCGAAAAAAGCACACAAGGATGGGACCACTCTAAAACAAGCC GCCCTGGAGTTGGAACTCCTTACCGAGGAAGAATTCGACCAATGGGTTCG ACCGGAGGACATGATTGGCCCGAAAGACTCCTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig895:10760..12993-

>mRNA_F-serratus_M_contig895.20304.1 ID=mRNA_F-serratus_M_contig895.20304.1|Name=mRNA_F-serratus_M_contig895.20304.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig895:10760..12993- (Fucus serratus male)
ATGCCTGGCAAAGTTAACCCCACCCAGTGCGAAGCGCTCACGATGGTGTG
CGCACAGATGCCTGGCAAAGTTAACCCCACCCAGTGCGAAGCGCTCACGA
TGGTGTGCGCACAGGTGATGGGGAACCACGTGGCGGTCACTGTTGGGGGC
TCCAACGGACACTTCGAGCTGAACGTCTTCAAGCCAGTCATGGTGAGATT
ATACCACCGATCGAACACGTGATGGGGAACCACGTGGCGGTCACTGTTGG
GGGCTCCAACGGACACTTCGAGCTGAACGTCTTCAAGCCAGTCATGGTGA
GATTATACCACCGATCGAACACGCGGGCCAACCTTCTGTCGTCCATGCGT
CTGCTGGGGGACGGCTGCGCATCATTTGCTGACCGATGCGTTTCGGGAAT
CGAGGCGAACCGGCGGGCCAACCTTCTGTCGTCCATGCGTCTGCTGGGGG
ACGGCTGCGCATCATTTGCTGACCGATGCGTTTCGGGAATCGAGGCGAAC
CGAGAACGCATTCAAGATATCATGTCGAGTTCGCTCATGCTGGTGACGGC
GTTGAACCCCAAGATTGGCTACGATAATGCTTCCAAGAGAACGCATTCAA
GATATCATGTCGAGTTCGCTCATGCTGGTGACGGCGTTGAACCCCAAGAT
TGGCTACGATAATGCTTCCAAGAAGGTTGCGAAAAAAGCACACAAGGATG
GGACCACTCTAAAACAAGCCGCCCTGGAGTTGGAACTCCTTACCGAGGAA
GAATTCGACCAATGGGTTCGACCGGAGGACATGATTGGCCCGAAAGACTC
CTGAAAGGTTGCGAAAAAAGCACACAAGGATGGGACCACTCTAAAACAAG
CCGCCCTGGAGTTGGAACTCCTTACCGAGGAAGAATTCGACCAATGGGTT
CGACCGGAGGACATGATTGGCCCGAAAGACTCCTGA
back to top