mRNA_F-serratus_M_contig890.20274.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig890.20274.1
Unique NamemRNA_F-serratus_M_contig890.20274.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: D8LHX5_ECTSI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 6.440e-47
Identity = 85/113 (75.22%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDREQEALVEAKK-------------VTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQRVIMRTGGPGLT 300
            GCV+LNGAGRFRDREQEAL+E +K               IK  GT++QR I RASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVP+L+PNAPEVFQRVI RTGGPGLT
Sbjct:  255 GCVMLNGAGRFRDREQEALLEVQKNAPPRPPFLLAWDEAIKYVGTFVQRAITRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPSLDPNAPEVFQRVISRTGGPGLT 367          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A6U1NRJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NRJ5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.260e-26
Identity = 63/112 (56.25%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 GCVLLNGAGRF--------RDREQEALVEAK--------KVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQRVIMRTGG 288
            GC+LLN AGRF           EQ A  EA         K  + + G  +QR +++ASFYYTKQP RIKQVL+QVY D +NVDD+LVESIR PA NPNAPEVF RVI R GG
Sbjct:  238 GCILLNAAGRFDPPEDVLKAQEEQAATQEAGQAWPPQWYKDAVAALGQALQRGVIQASFYYTKQPLRIKQVLSQVYTDTKNVDDDLVESIRFPAENPNAPEVFYRVIRRNGG 349          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S1ZKC8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKC8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.230e-22
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDREQEALVEAKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
            GCVLLN AGRF++ +     E   + I +  T I+R +++ SF YTKQPARI+QVL QVYP +  NVD+ELVESIR P+L+PNA EVF RVI + G
Sbjct:  183 GCVLLNAAGRFKNPDAPPEKEPNAI-IDAIATLIKRAVIQLSFIYTKQPARIEQVLRQVYPINANNVDEELVESIRYPSLDPNAAEVFYRVITKNG 277          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: B5YNN1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNN1_THAPS)

HSP 1 Score: 99.0 bits (245), Expect = 2.650e-22
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDREQEALVE---AKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
            GC+LLN AGRFRD   EA VE        +KS    IQR ++  SF YTKQPARI Q+L  VYP +  NVD ELVESI+ PAL+PNA EVF RVI + G
Sbjct:  150 GCILLNAAGRFRD--PEATVEDTATPNPIVKSVSAAIQRFVIACSFIYTKQPARITQILKNVYPINNANVDSELVESIQTPALDPNAAEVFYRVITKNG 246          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S2EXP3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXP3_TRICV)

HSP 1 Score: 95.1 bits (235), Expect = 4.330e-22
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    4 CVLLNGAGRFRDREQEALVEAKKVT--IKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
            CVLLN AGRFRD +  A    K+    +++    IQR ++ ASF YTKQPARI+QVL QVYP +   VD ELVESIRVP+ +PNA EVF RVI + G
Sbjct:    1 CVLLNAAGRFRDPDAPADDGTKEPNPFVEAVSKAIQRLVIAASFVYTKQPARIEQVLRQVYPINADMVDPELVESIRVPSTDPNAAEVFYRVITKNG 97          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S2PTK7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTK7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.710e-21
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDRE-QEALVEAKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
            GC+LLN AGRFR  E +E         +KS  +  QR ++  SF  TKQPARI+Q+L  VYP D  NV+ ELVESIRVPAL+PNA EVF RVI + G
Sbjct:  205 GCILLNAAGRFRPEEGEEETPSDPNPIVKSISSAFQRFVIACSFVITKQPARIEQILKSVYPSDSSNVNSELVESIRVPALDPNAAEVFYRVITKNG 301          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S2UMU3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMU3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.040e-19
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDREQEALVEA-KKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRN-VDDELVESIRVPALNPNAPEVFQRVIMR 279
            GC+LLN AG+F+D  +E ++E  K   ++S  + IQR ++  SF  TKQPARI+QVL QVYP   N VD ELV+SI++P+ +PNA EVF RVI +
Sbjct:  197 GCILLNAAGKFKDPTEEIIIEEPKNEFVESIMSAIQRAVIAVSFVVTKQPARIEQVLRQVYPINANMVDQELVDSIQLPSQDPNAAEVFYRVIKK 291          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A2P6TI17_CHLSO (Chloroplastic isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TI17_CHLSO)

HSP 1 Score: 92.4 bits (228), Expect = 1.890e-19
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDREQEALVEAKKVT----------IKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
            G VLLN AGRF +  +E+  EA   T          ++  GT ++R  + ASF +TKQPARI+QVL QVY   RN+DD+LV SI +PA +PNA EVF RVI   G
Sbjct:  227 GVVLLNAAGRFEEAGEESSEEAAVATPEQQNLWSGLVEQVGTAVKRAAVFASFVFTKQPARIRQVLGQVYVSDRNLDDDLVRSISLPAQDPNAAEVFYRVITARG 331          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: K0RN28_THAOC (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RN28_THAOC)

HSP 1 Score: 89.0 bits (219), Expect = 5.520e-19
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 GCVLLNGAGRFRDREQEALVEAKKVT--IKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTGGPG 294
            G VLLNGAG+FRD +     EA++    I+S    IQR ++  SF Y KQP RI Q+LT VYP    +VD ELV SI  PAL+P+APEVF R+I   G  G
Sbjct:   63 GTVLLNGAGQFRDPDASPAEEAERPNPIIESVSAAIQRFVIACSFVYIKQPMRIAQILTSVYPVTAESVDPELVSSIHTPALDPDAPEVFFRLISGKGRGG 163          
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: K0TNG4_THAOC (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNG4_THAOC)

HSP 1 Score: 90.9 bits (224), Expect = 7.360e-19
Identity = 56/101 (55.45%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 GCVLLNGAGRFRD-----REQEALVEAKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
            G VLLNGAG+FRD      E+EA  E     I+S    IQR ++  SF YTKQP RI Q+L  VYP    NVD ELV SI  PAL+P+APEVF RVI R G
Sbjct:  230 GTVLLNGAGQFRDPDATPAEEEA--ERPNPIIESVSAAIQRFVIACSFVYTKQPMRIAQILKNVYPVTADNVDRELVSSIHTPALDPDAPEVFFRVITRKG 328          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX5_ECTSI6.440e-4775.22Predicted hydrolases or acyltransferases (Alpha/be... [more]
A0A6U1NRJ5_9STRA1.260e-2656.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZKC8_9STRA2.230e-2256.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B5YNN1_THAPS2.650e-2257.58Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2EXP3_TRICV4.330e-2256.70Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2PTK7_9STRA1.710e-2155.67Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2UMU3_9STRA1.040e-1952.63Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2P6TI17_CHLSO1.890e-1949.52Chloroplastic isoform X2 n=1 Tax=Chlorella sorokin... [more]
K0RN28_THAOC5.520e-1951.49AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
K0TNG4_THAOC7.360e-1955.45AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig890contigF-serratus_M_contig890:329245..330321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue2.9e-25
Seed eggNOG ortholog2880.D8LHX5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size401
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig890.20274.1prot_F-serratus_M_contig890.20274.1Fucus serratus malepolypeptideF-serratus_M_contig890 329328..329863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932596.4873672-UTR-F-serratus_M_contig890:329244..3293271622932596.4873672-UTR-F-serratus_M_contig890:329244..329327Fucus serratus maleUTRF-serratus_M_contig890 329245..329327 -
1690964378.4927175-UTR-F-serratus_M_contig890:329244..3293271690964378.4927175-UTR-F-serratus_M_contig890:329244..329327Fucus serratus maleUTRF-serratus_M_contig890 329245..329327 -
1622932596.559968-UTR-F-serratus_M_contig890:329863..3299011622932596.559968-UTR-F-serratus_M_contig890:329863..329901Fucus serratus maleUTRF-serratus_M_contig890 329864..329901 -
1690964378.552056-UTR-F-serratus_M_contig890:329863..3299011690964378.552056-UTR-F-serratus_M_contig890:329863..329901Fucus serratus maleUTRF-serratus_M_contig890 329864..329901 -
1622932596.573659-UTR-F-serratus_M_contig890:330245..3303211622932596.573659-UTR-F-serratus_M_contig890:330245..330321Fucus serratus maleUTRF-serratus_M_contig890 330246..330321 -
1690964378.5604188-UTR-F-serratus_M_contig890:330245..3303211690964378.5604188-UTR-F-serratus_M_contig890:330245..330321Fucus serratus maleUTRF-serratus_M_contig890 330246..330321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932596.507339-CDS-F-serratus_M_contig890:329327..3293901622932596.507339-CDS-F-serratus_M_contig890:329327..329390Fucus serratus maleCDSF-serratus_M_contig890 329328..329390 -
1690964378.5189507-CDS-F-serratus_M_contig890:329327..3293901690964378.5189507-CDS-F-serratus_M_contig890:329327..329390Fucus serratus maleCDSF-serratus_M_contig890 329328..329390 -
1622932596.5235243-CDS-F-serratus_M_contig890:329556..3296491622932596.5235243-CDS-F-serratus_M_contig890:329556..329649Fucus serratus maleCDSF-serratus_M_contig890 329557..329649 -
1690964378.534553-CDS-F-serratus_M_contig890:329556..3296491690964378.534553-CDS-F-serratus_M_contig890:329556..329649Fucus serratus maleCDSF-serratus_M_contig890 329557..329649 -
1622932596.5436547-CDS-F-serratus_M_contig890:329815..3298631622932596.5436547-CDS-F-serratus_M_contig890:329815..329863Fucus serratus maleCDSF-serratus_M_contig890 329816..329863 -
1690964378.5436292-CDS-F-serratus_M_contig890:329815..3298631690964378.5436292-CDS-F-serratus_M_contig890:329815..329863Fucus serratus maleCDSF-serratus_M_contig890 329816..329863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig890.20274.1

>prot_F-serratus_M_contig890.20274.1 ID=prot_F-serratus_M_contig890.20274.1|Name=mRNA_F-serratus_M_contig890.20274.1|organism=Fucus serratus male|type=polypeptide|length=68bp
MRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQ
RVIMRTGGPGLTARRPT*
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mRNA from alignment at F-serratus_M_contig890:329245..330321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig890.20274.1 ID=mRNA_F-serratus_M_contig890.20274.1|Name=mRNA_F-serratus_M_contig890.20274.1|organism=Fucus serratus male|type=mRNA|length=1077bp|location=Sequence derived from alignment at F-serratus_M_contig890:329245..330321- (Fucus serratus male)
GGATGCGTGTTGTTGAACGGAGCGGGAAGGTTTCGAGACCGCGAGCAAGA GGCCCTCGTGGAAGCTAAGAAGGTGAGTGTGGCCAGCTATAGCTCGGGCT GTACACATATTTTCCATTTTGCTTTGCCTGCGGCCACGACAATCTATCTT GTGTTGTAGATCAACTGAGAACGATAAAATCTTTGTTATATTCAGTGTCC TAGGTACAGAAAAAACACCAAAACAATGTTAGCGCTGCTGAGCGACGCAA AAATTCATGGCCCTGTATACAGTAGTACTTATGATTTTCGAGGGAAATGG GGATCCTTTGTCCTTTTCCAACTTGCCTGACGCGGCTCGGGTCATGCGAC GTGGCGCGCGCGATCCTTCCGACGCAGGACACTCCCCCAAGAGCACCCTT TCTATTGGCGTGGGACCAAGCGATCAAGTCCGCGGGCACGTACATCCAGA GGACCATTATGCGGGCGTCATTTTACTACACGAAGCAGCCCGCACGCATC AAGCAGGTTTTTGCAACGCAGTTCTCCGCTATTTTTTTTTTGCGCTTGCC ATCTAAAAGCGTAAGGTTTGGGTAACAGTGTGAATCGATATGGAGGCTAT TAAGTGGCACACCCCGAGCGCTTGCGCGAAGCCCGCTCTTCACTTCGACA CGCACGCCGTTTGCTTTCGCAGGTGCTCACTCAAGTGTATCCGGACCCTC GAAACGTGGACGACGAGCTTGTGGAGAGCATCCGCGTGCCTGCCTTAAAC CCAAACGCTCCCGAGGTACGCGTTAAGGCCGATATATTTGTATCCCATTG AGTTCTCGGGGGGGCGTCCGCGCGGTTGGATCATCGCTCGATGTCACGAA GGTTCAGAACAGCCCCTGAAGAAAACGTCATAACCCTCACCATTAAGGGA GTCTTTTCGATTGGTTCTCCTCCGCGGCCAGGTGTTCCAGCGTGTTATTA TGAGAACGGGGGGCCCTGGGCTTACTGCTAGACGACCTACTTGAAGGGTT CAGAGTCGCCCTTGTTGCTCCTGTGGGGAGAGCTCGACCCTTGGATTCGA CCAGCAGCCGCTGACAAGATCCAGGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig890:329245..330321-

>mRNA_F-serratus_M_contig890.20274.1 ID=mRNA_F-serratus_M_contig890.20274.1|Name=mRNA_F-serratus_M_contig890.20274.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig890:329245..330321- (Fucus serratus male)
ATGCGGGCGTCATTTTACTACACGAAGCAGCCCGCACGCATCAAGCAGAT
GCGGGCGTCATTTTACTACACGAAGCAGCCCGCACGCATCAAGCAGGTGC
TCACTCAAGTGTATCCGGACCCTCGAAACGTGGACGACGAGCTTGTGGAG
AGCATCCGCGTGCCTGCCTTAAACCCAAACGCTCCCGAGGTGCTCACTCA
AGTGTATCCGGACCCTCGAAACGTGGACGACGAGCTTGTGGAGAGCATCC
GCGTGCCTGCCTTAAACCCAAACGCTCCCGAGGTGTTCCAGCGTGTTATT
ATGAGAACGGGGGGCCCTGGGCTTACTGCTAGACGACCTACTTGAGTGTT
CCAGCGTGTTATTATGAGAACGGGGGGCCCTGGGCTTACTGCTAGACGAC
CTACTTGA
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