mRNA_F-serratus_M_contig890.20274.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: D8LHX5_ECTSI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX5_ECTSI) HSP 1 Score: 166 bits (419), Expect = 6.440e-47 Identity = 85/113 (75.22%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDREQEALVEAKK-------------VTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQRVIMRTGGPGLT 300
GCV+LNGAGRFRDREQEAL+E +K IK GT++QR I RASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVP+L+PNAPEVFQRVI RTGGPGLT
Sbjct: 255 GCVMLNGAGRFRDREQEALLEVQKNAPPRPPFLLAWDEAIKYVGTFVQRAITRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPSLDPNAPEVFQRVISRTGGPGLT 367
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A6U1NRJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NRJ5_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.260e-26 Identity = 63/112 (56.25%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 GCVLLNGAGRF--------RDREQEALVEAK--------KVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQRVIMRTGG 288
GC+LLN AGRF EQ A EA K + + G +QR +++ASFYYTKQP RIKQVL+QVY D +NVDD+LVESIR PA NPNAPEVF RVI R GG
Sbjct: 238 GCILLNAAGRFDPPEDVLKAQEEQAATQEAGQAWPPQWYKDAVAALGQALQRGVIQASFYYTKQPLRIKQVLSQVYTDTKNVDDDLVESIRFPAENPNAPEVFYRVIRRNGG 349
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S1ZKC8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKC8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.230e-22 Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDREQEALVEAKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
GCVLLN AGRF++ + E + I + T I+R +++ SF YTKQPARI+QVL QVYP + NVD+ELVESIR P+L+PNA EVF RVI + G
Sbjct: 183 GCVLLNAAGRFKNPDAPPEKEPNAI-IDAIATLIKRAVIQLSFIYTKQPARIEQVLRQVYPINANNVDEELVESIRYPSLDPNAAEVFYRVITKNG 277
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: B5YNN1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNN1_THAPS) HSP 1 Score: 99.0 bits (245), Expect = 2.650e-22 Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDREQEALVE---AKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
GC+LLN AGRFRD EA VE +KS IQR ++ SF YTKQPARI Q+L VYP + NVD ELVESI+ PAL+PNA EVF RVI + G
Sbjct: 150 GCILLNAAGRFRD--PEATVEDTATPNPIVKSVSAAIQRFVIACSFIYTKQPARITQILKNVYPINNANVDSELVESIQTPALDPNAAEVFYRVITKNG 246
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S2EXP3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXP3_TRICV) HSP 1 Score: 95.1 bits (235), Expect = 4.330e-22 Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query: 4 CVLLNGAGRFRDREQEALVEAKKVT--IKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
CVLLN AGRFRD + A K+ +++ IQR ++ ASF YTKQPARI+QVL QVYP + VD ELVESIRVP+ +PNA EVF RVI + G
Sbjct: 1 CVLLNAAGRFRDPDAPADDGTKEPNPFVEAVSKAIQRLVIAASFVYTKQPARIEQVLRQVYPINADMVDPELVESIRVPSTDPNAAEVFYRVITKNG 97
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S2PTK7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTK7_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.710e-21 Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDRE-QEALVEAKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
GC+LLN AGRFR E +E +KS + QR ++ SF TKQPARI+Q+L VYP D NV+ ELVESIRVPAL+PNA EVF RVI + G
Sbjct: 205 GCILLNAAGRFRPEEGEEETPSDPNPIVKSISSAFQRFVIACSFVITKQPARIEQILKSVYPSDSSNVNSELVESIRVPALDPNAAEVFYRVITKNG 301
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A7S2UMU3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMU3_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.040e-19 Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDREQEALVEA-KKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRN-VDDELVESIRVPALNPNAPEVFQRVIMR 279
GC+LLN AG+F+D +E ++E K ++S + IQR ++ SF TKQPARI+QVL QVYP N VD ELV+SI++P+ +PNA EVF RVI +
Sbjct: 197 GCILLNAAGKFKDPTEEIIIEEPKNEFVESIMSAIQRAVIAVSFVVTKQPARIEQVLRQVYPINANMVDQELVDSIQLPSQDPNAAEVFYRVIKK 291
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: A0A2P6TI17_CHLSO (Chloroplastic isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TI17_CHLSO) HSP 1 Score: 92.4 bits (228), Expect = 1.890e-19 Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDREQEALVEAKKVT----------IKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
G VLLN AGRF + +E+ EA T ++ GT ++R + ASF +TKQPARI+QVL QVY RN+DD+LV SI +PA +PNA EVF RVI G
Sbjct: 227 GVVLLNAAGRFEEAGEESSEEAAVATPEQQNLWSGLVEQVGTAVKRAAVFASFVFTKQPARIRQVLGQVYVSDRNLDDDLVRSISLPAQDPNAAEVFYRVITARG 331
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: K0RN28_THAOC (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RN28_THAOC) HSP 1 Score: 89.0 bits (219), Expect = 5.520e-19 Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1 GCVLLNGAGRFRDREQEALVEAKKVT--IKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTGGPG 294
G VLLNGAG+FRD + EA++ I+S IQR ++ SF Y KQP RI Q+LT VYP +VD ELV SI PAL+P+APEVF R+I G G
Sbjct: 63 GTVLLNGAGQFRDPDASPAEEAERPNPIIESVSAAIQRFVIACSFVYIKQPMRIAQILTSVYPVTAESVDPELVSSIHTPALDPDAPEVFFRLISGKGRGG 163
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Match: K0TNG4_THAOC (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNG4_THAOC) HSP 1 Score: 90.9 bits (224), Expect = 7.360e-19 Identity = 56/101 (55.45%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1 GCVLLNGAGRFRD-----REQEALVEAKKVTIKSAGTYIQRTIMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRVPALNPNAPEVFQRVIMRTG 285
G VLLNGAG+FRD E+EA E I+S IQR ++ SF YTKQP RI Q+L VYP NVD ELV SI PAL+P+APEVF RVI R G
Sbjct: 230 GTVLLNGAGQFRDPDATPAEEEA--ERPNPIIESVSAAIQRFVIACSFVYTKQPMRIAQILKNVYPVTADNVDRELVSSIHTPALDPDAPEVFFRVITRKG 328 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig890.20274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig890.20274.1 >prot_F-serratus_M_contig890.20274.1 ID=prot_F-serratus_M_contig890.20274.1|Name=mRNA_F-serratus_M_contig890.20274.1|organism=Fucus serratus male|type=polypeptide|length=68bp MRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPALNPNAPEVFQback to top mRNA from alignment at F-serratus_M_contig890:329245..330321- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig890.20274.1 ID=mRNA_F-serratus_M_contig890.20274.1|Name=mRNA_F-serratus_M_contig890.20274.1|organism=Fucus serratus male|type=mRNA|length=1077bp|location=Sequence derived from alignment at F-serratus_M_contig890:329245..330321- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig890:329245..330321- >mRNA_F-serratus_M_contig890.20274.1 ID=mRNA_F-serratus_M_contig890.20274.1|Name=mRNA_F-serratus_M_contig890.20274.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig890:329245..330321- (Fucus serratus male)back to top |