mRNA_F-serratus_M_contig877.20129.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig877.20129.1
Unique NamemRNA_F-serratus_M_contig877.20129.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.960e-32
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
            Y C+TW+    HY  LR++HHR+LLR+IG  RK+  +R  SY + L+  +C+S+E T+R RRLL+AG+L R   GRLPKR++FG L G  +R RGG+E+ W  CV  +++AFG
Sbjct:    6 YSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.090e-32
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
            YGC TW+    HY  LR++HHR+LLR+IG  RK+  +R  SY + L   +CES+E T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  +++AFG
Sbjct:  138 YGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 116 bits (290), Expect = 3.770e-30
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRK-RPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAF 339
            YGC TWTL  +H+A+LR+ HH VLLR+IG  R+ R DH   SY +AL IT+CESIETT+R RRL +AG ++R   GRLP R++FG + G      GG+ K W   +  ++R F
Sbjct:   12 YGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVF 124          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.390e-30
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
            YGC TW+    HY  LR++HHR+L R+IG   K+  +R  SY R LE  +C+S+E T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  +++AFG
Sbjct:  401 YGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.800e-30
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
            YGC TW+    HY  LR++HHR+LLR+IG  RK+  +R  SY + L+  +C+S+E T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  ++ AFG
Sbjct:  490 YGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.430e-29
Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
            YGC TW+    HY  LR++HHR+LLR+IG  RK+  +R  SY + L+  +C+S+E T+R RRLL+AG L R   GRLPKR++ G L G  +R RGG+E+ W  CV  +++AFG
Sbjct:  162 YGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.810e-29
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG---IAGDW 357
            YGC TW+ R+ HY  L+T HHR+LLR+IG  RKR  +R  SY +AL+   C+S+E T+R RRLL+AG + R   GRLPKR++FG L G    G+G  E+ W  C++ +++ F    + G W
Sbjct:  168 YGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.110e-29
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAF 339
            YGC TW+ R+ HY  L+T HHR+LLR+IG  RKR  +R  SY +AL+   C+S+E T+R RRLL+AG + R   GRLPKR++FG L G    G+G  E+ W  C++ +++ F
Sbjct:  117 YGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.490e-28
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAF 339
            YGC TW+ R+ HY  L+T HHR+LLR+IG  RKR  +R  SY +AL+   C+S+E T+R RRLL+AG + R   GRLPKR++FG L G    G+G  E+ W  C++ +++ F
Sbjct:  136 YGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247          
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.710e-28
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
            YGC TW+    HY  LR++HHR+LLR+IG  RK+  +R  SY +A +  +C+S+E T+R RRLL A  L R   GRLPKR++ G L G  +R RGG+++ W  CV  +++AFG
Sbjct:  118 YGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE1.960e-3249.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE2.090e-3251.33Reverse transcriptase domain-containing protein n=... [more]
UPI001AA1A1FE3.770e-3050.44hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JLT1_9PHAE6.390e-3050.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE7.800e-3050.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE1.430e-2949.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE6.810e-2946.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE7.110e-2948.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE3.490e-2848.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2V4_9PHAE4.710e-2847.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig877contigF-serratus_M_contig877:334197..334601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog7897.ENSLACP00000000641
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.2573593-CDS-F-serratus_M_contig877:334196..3346011622932557.2573593-CDS-F-serratus_M_contig877:334196..334601Fucus serratus maleCDSF-serratus_M_contig877 334197..334601 -
1690964364.4718173-CDS-F-serratus_M_contig877:334196..3346011690964364.4718173-CDS-F-serratus_M_contig877:334196..334601Fucus serratus maleCDSF-serratus_M_contig877 334197..334601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig877.20129.1prot_F-serratus_M_contig877.20129.1Fucus serratus malepolypeptideF-serratus_M_contig877 334197..334601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig877.20129.1

>prot_F-serratus_M_contig877.20129.1 ID=prot_F-serratus_M_contig877.20129.1|Name=mRNA_F-serratus_M_contig877.20129.1|organism=Fucus serratus male|type=polypeptide|length=135bp
QYGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEIT
QCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEK
EWTDCVQSNIRAFGIAGDWKATALKAEVWVETVSE
back to top

mRNA from alignment at F-serratus_M_contig877:334197..334601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig877.20129.1 ID=mRNA_F-serratus_M_contig877.20129.1|Name=mRNA_F-serratus_M_contig877.20129.1|organism=Fucus serratus male|type=mRNA|length=405bp|location=Sequence derived from alignment at F-serratus_M_contig877:334197..334601- (Fucus serratus male)
CAGTATGGATGCAGTACGTGGACCCTCCGCCAGGAACACTACGCCAGACT CCGCACCGTACACCACCGAGTCTTGCTTCGTATCATCGGGGCACTGCGCA AGAGACCAGACCACCGGATGACTTCATACAACCGTGCCCTTGAGATAACC CAGTGTGAGAGCATTGAGACGACATTGCGAGCGAGAAGACTGCTGTGGGC GGGGACGCTCCTCAGAATGAGCGGCGGGCGGCTGCCGAAGCGAATCGTTT TTGGAAACCTTGAGGGTGCACTACGGAGAGGACGGGGTGGGAAGGAGAAA GAGTGGACCGATTGCGTCCAGAGCAACATCCGGGCGTTTGGCATAGCCGG GGATTGGAAAGCGACGGCGTTAAAGGCTGAGGTGTGGGTTGAGACGGTCT CGGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig877:334197..334601-

>mRNA_F-serratus_M_contig877.20129.1 ID=mRNA_F-serratus_M_contig877.20129.1|Name=mRNA_F-serratus_M_contig877.20129.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig877:334197..334601- (Fucus serratus male)
CAGTATGGATGCAGTACGTGGACCCTCCGCCAGGAACACTACGCCAGACT
CCGCACCGTACACCACCGAGTCTTGCTTCGTATCATCGGGGCACTGCGCA
AGAGACCAGACCACCGGATGACTTCATACAACCGTGCCCTTGAGATAACC
CAGTGTGAGAGCATTGAGACGACATTGCGAGCGAGAAGACTGCTGTGGGC
GGGGACGCTCCTCAGAATGAGCGGCGGGCGGCTGCCGAAGCGAATCGTTT
TTGGAAACCTTGAGGGTGCACTACGGAGAGGACGGGGTGGGAAGGAGAAA
GAGTGGACCGATTGCGTCCAGAGCAACATCCGGGCGTTTGGCATAGCCGG
GGATTGGAAAGCGACGGCGTTAAAGGCTGAGGTGTGGGTTGAGACGGTCT
CGGAGCAGTATGGATGCAGTACGTGGACCCTCCGCCAGGAACACTACGCC
AGACTCCGCACCGTACACCACCGAGTCTTGCTTCGTATCATCGGGGCACT
GCGCAAGAGACCAGACCACCGGATGACTTCATACAACCGTGCCCTTGAGA
TAACCCAGTGTGAGAGCATTGAGACGACATTGCGAGCGAGAAGACTGCTG
TGGGCGGGGACGCTCCTCAGAATGAGCGGCGGGCGGCTGCCGAAGCGAAT
CGTTTTTGGAAACCTTGAGGGTGCACTACGGAGAGGACGGGGTGGGAAGG
AGAAAGAGTGGACCGATTGCGTCCAGAGCAACATCCGGGCGTTTGGCATA
GCCGGGGATTGGAAAGCGACGGCGTTAAAGGCTGAGGTGTGGGTTGAGAC
GGTCTCGGAG
back to top