mRNA_F-serratus_M_contig877.20129.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.960e-32 Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
Y C+TW+ HY LR++HHR+LLR+IG RK+ +R SY + L+ +C+S+E T+R RRLL+AG+L R GRLPKR++FG L G +R RGG+E+ W CV +++AFG
Sbjct: 6 YSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.090e-32 Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
YGC TW+ HY LR++HHR+LLR+IG RK+ +R SY + L +CES+E T+R RRLL+AG L R GRLPKR++FG L G +R RGG+E+ W CV +++AFG
Sbjct: 138 YGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 116 bits (290), Expect = 3.770e-30 Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRK-RPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAF 339
YGC TWTL +H+A+LR+ HH VLLR+IG R+ R DH SY +AL IT+CESIETT+R RRL +AG ++R GRLP R++FG + G GG+ K W + ++R F
Sbjct: 12 YGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVF 124
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE) HSP 1 Score: 122 bits (306), Expect = 6.390e-30 Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
YGC TW+ HY LR++HHR+L R+IG K+ +R SY R LE +C+S+E T+R RRLL+AG L R GRLPKR++FG L G +R RGG+E+ W CV +++AFG
Sbjct: 401 YGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 122 bits (307), Expect = 7.800e-30 Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
YGC TW+ HY LR++HHR+LLR+IG RK+ +R SY + L+ +C+S+E T+R RRLL+AG L R GRLPKR++FG L G +R RGG+E+ W CV ++ AFG
Sbjct: 490 YGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.430e-29 Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
YGC TW+ HY LR++HHR+LLR+IG RK+ +R SY + L+ +C+S+E T+R RRLL+AG L R GRLPKR++ G L G +R RGG+E+ W CV +++AFG
Sbjct: 162 YGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 116 bits (290), Expect = 6.810e-29 Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG---IAGDW 357
YGC TW+ R+ HY L+T HHR+LLR+IG RKR +R SY +AL+ C+S+E T+R RRLL+AG + R GRLPKR++FG L G G+G E+ W C++ +++ F + G W
Sbjct: 168 YGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 115 bits (287), Expect = 7.110e-29 Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAF 339
YGC TW+ R+ HY L+T HHR+LLR+IG RKR +R SY +AL+ C+S+E T+R RRLL+AG + R GRLPKR++FG L G G+G E+ W C++ +++ F
Sbjct: 117 YGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 115 bits (287), Expect = 3.490e-28 Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAF 339
YGC TW+ R+ HY L+T HHR+LLR+IG RKR +R SY +AL+ C+S+E T+R RRLL+AG + R GRLPKR++FG L G G+G E+ W C++ +++ F
Sbjct: 136 YGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.710e-28 Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 4 YGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITQCESIETTLRARRLLWAGTLLRMSGGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSNIRAFG 342
YGC TW+ HY LR++HHR+LLR+IG RK+ +R SY +A + +C+S+E T+R RRLL A L R GRLPKR++ G L G +R RGG+++ W CV +++AFG
Sbjct: 118 YGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig877.20129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig877.20129.1 >prot_F-serratus_M_contig877.20129.1 ID=prot_F-serratus_M_contig877.20129.1|Name=mRNA_F-serratus_M_contig877.20129.1|organism=Fucus serratus male|type=polypeptide|length=135bp QYGCSTWTLRQEHYARLRTVHHRVLLRIIGALRKRPDHRMTSYNRALEITback to top mRNA from alignment at F-serratus_M_contig877:334197..334601- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig877.20129.1 ID=mRNA_F-serratus_M_contig877.20129.1|Name=mRNA_F-serratus_M_contig877.20129.1|organism=Fucus serratus male|type=mRNA|length=405bp|location=Sequence derived from alignment at F-serratus_M_contig877:334197..334601- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig877:334197..334601- >mRNA_F-serratus_M_contig877.20129.1 ID=mRNA_F-serratus_M_contig877.20129.1|Name=mRNA_F-serratus_M_contig877.20129.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig877:334197..334601- (Fucus serratus male)back to top |