mRNA_F-serratus_M_contig83.19691.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig83.19691.1
Unique NamemRNA_F-serratus_M_contig83.19691.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.580e-37
Identity = 63/85 (74.12%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    4 VPSPRVLRELETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCLGTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDLE 258
            +PSP ++R+LE V+GQLTDALRALAV+F +VGYCQGLDYVVAH+IKCLGTD +R ++SDPDRVF V++GLF  YGL+HIYSEDLE
Sbjct: 1625 LPSPAMIRQLELVKGQLTDALRALAVSFGEVGYCQGLDYVVAHLIKCLGTDCHRGFASDPDRVFRVILGLFRDYGLEHIYSEDLE 1709          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.600e-36
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    7 PSPRVLRELETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCLGTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDLE 258
            PSP  +R+LE V+GQLTDALRALAV+F +VGYCQGLDYVVAH+IKCLGTD +R ++SDP+RVF V++GLF  YGL+HIYSEDLE
Sbjct: 1925 PSPTTIRQLELVKGQLTDALRALAVSFGEVGYCQGLDYVVAHLIKCLGTDCHRGFASDPERVFRVILGLFRDYGLEHIYSEDLE 2008          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A484ED21_BRELC (Rab-GAP TBC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED21_BRELC)

HSP 1 Score: 62.0 bits (149), Expect = 2.730e-9
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHII-KCLGTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDLE 258
            E +  QL++ L ALA  F  VGYCQG+DY+ AH++ + +      A  ++ +  F +L+ LFE YGLQ++++  L+
Sbjct:  349 EDLTTQLSEILHALAGRFPTVGYCQGMDYIAAHLLNQVMNGKTTPATKAEAESTFWLLVTLFENYGLQNMFAPGLQ 424          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A1V9Z5B5_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5B5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.510e-8
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCL-GTDANRAYSSDPDRV----------FTVLIGLFEGYGLQHIYSEDLE 258
            E ++ QL+  L ALA  F  VGYCQG+DY+ AHI++ +   DA    +S   R           F +L+ LFE YGL+ ++S  L+
Sbjct:  296 EELQHQLSSILHALAGRFPDVGYCQGMDYIAAHILEHVKAADAEFGAASPVKRAAATQVQVEATFWILVALFESYGLRQMFSPGLQ 381          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: H3GPL4_PHYRM (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPL4_PHYRM)

HSP 1 Score: 58.2 bits (139), Expect = 6.210e-8
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHII-KCLGTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDL 255
            E +  QL++ L ALA  F  VGYCQG+DY+ AH++ K   + A     ++ +  F +L+ LFE YGL  +++  L
Sbjct:  360 EDLTTQLSEILHALAGRFPAVGYCQGMDYIAAHVLNKVKRSGAAADTKAEAENTFWLLVTLFEQYGLHEMFAPGL 434          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A662WX69_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX69_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.220e-8
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHII-KCLGTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDL 255
            E +  QL++ L ALA  F  VGYCQG+DY+ AH++ K     A +   ++ +  F +L+ LFE YGL  +++  L
Sbjct:  389 EDLTNQLSEILHALAGRFPDVGYCQGMDYIAAHVLNKVKKRGAAQDARTEAESAFWLLVTLFERYGLHEMFAPGL 463          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A1V9ZXI3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXI3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.420e-8
Identity = 30/86 (34.88%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCLGTDANRAYSSDP-----------DRVFTVLIGLFEGYGLQHIYSEDLE 258
            E ++ QL+  L ALA  F  VGYCQG+DY+ AHI++ +     +    +P           +  F +L+ LFE YGL+ ++S  L+
Sbjct:  295 EELQHQLSSILHALAGKFPDVGYCQGMDYISAHILEHVKAADRKFGDHEPVKRAAATQVQVETTFWILVALFESYGLRQMFSPGLQ 380          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A3M6VHM9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.490e-8
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCLGTDANRAYSSDP-DRVFTVLIGLFEGYGLQHIYSEDL 255
            E +  QL++ L ALA  F  VGYCQG+DY+ AH++  + +  +   + D  +  + +L+ LFE YGLQ +++  L
Sbjct:  364 EDLTTQLSEILHALAGRFPAVGYCQGMDYIAAHVLNKVKSSGSAHDTKDEAESTYWLLVTLFEQYGLQDMFAPGL 438          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A3F2RC15_9STRA (Rab-GAP TBC domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RC15_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.150e-7
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   34 ETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHI---IKCLGTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDL 255
            E +  QL++ L ALA  F  VGYCQG+DYV AH+   +K  GT  +    ++ +  F +L+ LFE YGL  +++  L
Sbjct:  317 EDLTNQLSEILHALAGRFPAVGYCQGMDYVAAHVLNKVKRGGTTCDT--KTESESAFWLLVTLFEQYGLHDMFAPGL 391          
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Match: A0A6G0WSL6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSL6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.150e-7
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   40 VRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCL-----------GTDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDL 255
            ++ Q+++ L ALA  F +VGYCQG+DY+ AH+++ +           G   +R   +  +  F ++  LFE YGL+ ++S  L
Sbjct:  297 IQEQMSNVLHALAGRFPEVGYCQGMDYITAHVLEHVKAADASYAHIHGETKHRVMVAQEETTFWLMASLFESYGLRDMFSPGL 379          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig83.19691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LIK8_ECTSI5.580e-3774.12Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5V9_9PHAE3.600e-3673.81Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A484ED21_BRELC2.730e-938.16Rab-GAP TBC domain-containing protein n=1 Tax=Brem... [more]
A0A1V9Z5B5_9STRA4.510e-838.37Rab-GAP TBC domain-containing protein n=1 Tax=Achl... [more]
H3GPL4_PHYRM6.210e-838.67Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A662WX69_9STRA6.220e-838.67Rab-GAP TBC domain-containing protein n=2 Tax=Noth... [more]
A0A1V9ZXI3_9STRA8.420e-834.88Rab-GAP TBC domain-containing protein n=1 Tax=Thra... [more]
A0A3M6VHM9_9STRA8.490e-837.33Rab-GAP TBC domain-containing protein n=1 Tax=Pero... [more]
A0A3F2RC15_9STRA1.150e-740.26Rab-GAP TBC domain-containing protein n=4 Tax=Phyt... [more]
A0A6G0WSL6_9STRA2.150e-732.53Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig83contigF-serratus_M_contig83:547128..548120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue9.1e-32
Seed eggNOG ortholog2880.D8LIK8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932460.1134436-CDS-F-serratus_M_contig83:547127..5472761622932460.1134436-CDS-F-serratus_M_contig83:547127..547276Fucus serratus maleCDSF-serratus_M_contig83 547128..547276 -
1690964319.2637208-CDS-F-serratus_M_contig83:547127..5472761690964319.2637208-CDS-F-serratus_M_contig83:547127..547276Fucus serratus maleCDSF-serratus_M_contig83 547128..547276 -
1622932460.1287053-CDS-F-serratus_M_contig83:548011..5481201622932460.1287053-CDS-F-serratus_M_contig83:548011..548120Fucus serratus maleCDSF-serratus_M_contig83 548012..548120 -
1690964319.275612-CDS-F-serratus_M_contig83:548011..5481201690964319.275612-CDS-F-serratus_M_contig83:548011..548120Fucus serratus maleCDSF-serratus_M_contig83 548012..548120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig83.19691.1prot_F-serratus_M_contig83.19691.1Fucus serratus malepolypeptideF-serratus_M_contig83 547128..548120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig83.19691.1

>prot_F-serratus_M_contig83.19691.1 ID=prot_F-serratus_M_contig83.19691.1|Name=mRNA_F-serratus_M_contig83.19691.1|organism=Fucus serratus male|type=polypeptide|length=86bp
FVPSPRVLRELETVRGQLTDALRALAVAFSKVGYCQGLDYVVAHIIKCLG
TDANRAYSSDPDRVFTVLIGLFEGYGLQHIYSEDLE
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mRNA from alignment at F-serratus_M_contig83:547128..548120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig83.19691.1 ID=mRNA_F-serratus_M_contig83.19691.1|Name=mRNA_F-serratus_M_contig83.19691.1|organism=Fucus serratus male|type=mRNA|length=993bp|location=Sequence derived from alignment at F-serratus_M_contig83:547128..548120- (Fucus serratus male)
TTCGTGCCGAGCCCGAGGGTTCTCCGTGAGCTGGAGACGGTCAGGGGGCA GTTGACGGACGCGCTGAGGGCGCTCGCGGTGGCATTCAGCAAGGTCGGAT ATTGCCAAGGTGTGTGCTATGATGTGTTGTAGGTAGGTCGAAAGGTTTTG CTAGTTTTTTTTTCAGGGAGTGCTTTTACTGGAGCGAGCTCACAGAGATT TCTCGCTCCGCCTCTGGTGGGGGGGAGGCACGAAATTTGCTCAAGTCTTG AGACTCGCGAGCTGCGGCAATTTCGGTAGTGTTAGTTTTTATTTTTCTGT GGCGGCGGTGATCGATAGCCGCGCTTCTACGGTCTCCCTTCTTTTGGGGG AAGGGGGGGCGCGGACTTGAGCGAGGTTTCTTGATGTATTGATGGTGTTC CGCGGCGGAGGGGGGCGGGTGAGTGCGACGTGAGTGTGCCGTCGCTGACA CGCTTGAACCATTTCAGAACTGCCTTGAAGATTGAAGAGGAAAAAAATTG AAGAGGAAAAAAACAATCGTTTGTTTTGATACATGTTCTTAGCATGGTCC CCCTCCCGATCGGTCGACAGTACAGTACAATACAGAATCCCGGAGATACC ATTTACGGTGAAAGAGGAAATAACGTACTGCTGTGTGTATGGCAGAGCAC GGTGGATCAAATGAAAAAAGTTCCGTCTAAAACTGCCTTGGTCACGTCAC TCGAGGGTACATATATGGGGGCGCTTCGTATGCATCGGTGTAATGTGTAT CATCCATTTCTTATTCCGGTCTCCCTCCCCTCTCCCCCCCGGCCTCTTTC CCCCCTCCCCTGGTTGTACACGCCTCACTACCCTGCACGTGAAGGCCTGG ACTACGTGGTCGCTCACATTATCAAGTGCCTCGGTACCGACGCGAACCGC GCGTATTCGTCCGATCCGGACCGCGTGTTTACGGTCCTGATTGGACTGTT CGAAGGGTACGGACTGCAGCACATTTACAGCGAGGACCTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig83:547128..548120-

>mRNA_F-serratus_M_contig83.19691.1 ID=mRNA_F-serratus_M_contig83.19691.1|Name=mRNA_F-serratus_M_contig83.19691.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig83:547128..548120- (Fucus serratus male)
TTCGTGCCGAGCCCGAGGGTTCTCCGTGAGCTGGAGACGGTCAGGGGGCA
GTTGACGGACGCGCTGAGGGCGCTCGCGGTGGCATTCAGCAAGGTCGGAT
ATTGCCAAGTTCGTGCCGAGCCCGAGGGTTCTCCGTGAGCTGGAGACGGT
CAGGGGGCAGTTGACGGACGCGCTGAGGGCGCTCGCGGTGGCATTCAGCA
AGGTCGGATATTGCCAAGGCCTGGACTACGTGGTCGCTCACATTATCAAG
TGCCTCGGTACCGACGCGAACCGCGCGTATTCGTCCGATCCGGACCGCGT
GTTTACGGTCCTGATTGGACTGTTCGAAGGGTACGGACTGCAGCACATTT
ACAGCGAGGACCTCGAGGCCTGGACTACGTGGTCGCTCACATTATCAAGT
GCCTCGGTACCGACGCGAACCGCGCGTATTCGTCCGATCCGGACCGCGTG
TTTACGGTCCTGATTGGACTGTTCGAAGGGTACGGACTGCAGCACATTTA
CAGCGAGGACCTCGAG
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